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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr4 | genome | chr4:570445..573722 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01930.1 vs.
Match: EWM28546.1 (60s acidic ribosomal protein p0 [Nannochloropsis gaditana]) HSP 1 Score: 548.5 bits (1412), Expect = 1.400e-152 Identity = 284/323 (87.93%), Postives = 305/323 (94.43%), Query Frame = 0
Query: 1 MPVWNRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFASAGGGGE--AAAAAPAGDAKPAKEEKEEEEADLGAGNMFGGGDGY 322
MPVWNRAKKEDYFE+VEELLGSYTKVF+VGVDNVGSKQMQQIR ALRG+ATVLMGKNTRIRKV+N+FL+KNP HPIEQL+ +VGGNVGFVFTNG+LG VRET+E+NRVPAPARVGS APC+VI+PPGPTGCDPGQTSFFQALQIATKITKGQIEIT+ VQILKEGDKVGNSEAILLQKLNILPFTYGLVI+TIYDNGSLFD KVLDLTDADLAAKFAVAVRNVAAISL+LGYPTLASLPHSIANAFKACVA+ VGLEEFSFEKA+PFKAYLKDPSAFA+A GGGE AA AA +AKPAKE EEEEAD+GAGNMF GGDGY
Sbjct: 102 MPVWNRAKKEDYFERVEELLGSYTKVFVVGVDNVGSKQMQQIRQALRGTATVLMGKNTRIRKVMNIFLKKNPGHPIEQLVNYVGGNVGFVFTNGDLGSVRETLEENRVPAPARVGSLAPCNVIVPPGPTGCDPGQTSFFQALQIATKITKGQIEITTAVQILKEGDKVGNSEAILLQKLNILPFTYGLVIQTIYDNGSLFDPKVLDLTDADLAAKFAVAVRNVAAISLQLGYPTLASLPHSIANAFKACVAVVVGLEEFSFEKAEPFKAYLKDPSAFAAASGGGEGGAAPAAAQEEAKPAKE--EEEEADIGAGNMF-GGDGY 421
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01930.1 ID=NO04G01930.1|Name=NO04G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2927bp
CACACGGAGGCCTCACGCGGCAGCCGTCTCTCTCTTCCCATGGCTGGCCA
TCCTCCTCCTTCCATCTCTCTACCCCTCTCTTCTTCTCCATTTACTCATG
GTCTCTTTGGAGGTTGTTCTTGTAGGGATAGGGAACATTTGGAATGTCTA
CGAGATTCTCTGCGGTGGCTTGGACAAGGCGGCTTCTGTTATGCACTCTC
TCTGCCTACCTTTCCGAGCCCTCCCCTCCCTTCTTCCTATATTCTTATCA
TGCAAGCCCTTTCATGCCTATCTCAAACCACCCCCACGTACCAATCCACA
CTACACAGACCACAGCGTCACCGGCAGCTGGTTAAATAGGGTTTGAGTCA
CTAACAGAACTCATTCCTCCAGCTACGGCTTCATCGTCTTCGCGACCACC
TCTACAAGAAACTACTTCAGTCACCCCCTAATCAACCATGCCCGTCTGGA
ACCGCGCCAAGAAGGAGGATTACTTCGAAAAGGTCGAAGAGCTCCTGGGT
TCCTACACCAAGGTCTTCATCGTCGGGGTCGACAATGTCGGCTCCAAGCA
GATGCAGCAGATTCGCCATGCCCTCCGCGGCAGCGCCACCGTCCTCATGG
GGAAGAACACGCGCATCCGGAAGGTCATCAACATGTTCCTCCGCAAAAAC
CCCGACCACCCTATCGAGCAGCTCCTTCAGTTCGTTGGCGGCAACGTCGG
CTTTGTCTTCACCAACGGCGAGCTCGGCCTGGTGCGTGAGACCGTGGAGA
AGAACCGGGTGCCAGCCCCTGCCCGTGTCGGGTCAACTGCCCCCTGTGAT
GTGATCATCCCCCCCGGCCCCACCGGCTGCGACCCCGGCCAGACCTCTTT
TTTCCAGGCCTTGCAAATCGCCACCAAGATTACCAAGGGGCAGATTGAGA
TAACCAGCGACGTGCAGATCCTGAAGGAAGGTGACAAGGTCGGCAATTCC
GAAGCCATCCTACTCCAGAAACTGAATATTCTCCCCTTCACTTACGGACT
GGTCATCAAGACCATCTACGACAACGGCTCCCTCTTCGACGCCAAGGTCC
TGGATCTCACCGATGCTGACTTGGCCGCTAAGTTCGCCGTGGCCGTGCGT
AATGTAGCCGCTATCTCGCTCAAGCTTGGGTATCCTACCCTTGCCTCCCT
CCCTCATTCCATCGCCAATGCCTTCAAGGCTTGCGTTGCCATCACGGTGG
GCCTCGAGGAGTTCTCTTTCGAGAAGGCGGATCCGTTTAAGGCCTACTTG
AAGGACCCCTCCGCCTTCGCCTCTGCCGGAGGTGGTGGAGAGGCGGCCGC
TGCCGCTCCTGCAGGGGATGCCAAGCCGGCGAAGGAGGAGAAGGAAGAGG
AAGAGGCTGACCTTGGGGCTGGCAACATGTTCGGTGGAGGTGATGGATAT
TAAGGAGCGATGTGGGCCTTGTCTGATGCGTCGGAATTCTTGTTCTTCCC
GTCCCTCCCTTCTCCTTCTCTTTTTTTCGTCTTGTAACTGGCAATTGCTT
TTGGGAGGCAGGAAAGAGAGGGAAAGGTGGAGGGGGGACGCAGTAGGGTA
AAGATTGCAAGACACCGATGGTGCGCACTGTCCGCTGGCCCTACGGGATC
CACTTGTTTCCGTGGAAAGGAGGTCGCAGGAAAGAGGAGAAAGAGGGAGA
GACTAAAAAAATGGAAGAAAAGTTGTGGTGGAAGTGAGACGGAGGGGTAG
GTTATAAATAACGGTGAGCCATAGCACAGCACACTTGATATTTGGGCCTT
TCTCGCTGGTGTGTCCTAACCAACGAAAGACAAGAAAGAAGAGAAGAAGA
AAAAGAGTAGAAGAAAAGGAAAATCGTTTTTTCATCTCAGCCCAGGCACC
GACCACCATTAGCCTTGCCTTCTTCTTCTTGGTCCAGACCTTTAATTTTA
ACTGCAATTACAAGTAATACGAGTCACACAAGTTTTCCCATTATCTCTCC
GTCCTCTCCCTCTCCTCCCTCCTATCCATTCTTTCTCCTCTCATCCATTC
CCTTCCTCTCGTTCGCCTCCTGCGTCCGCGCCGCAACATTGTTTAAAGCT
CCTACCCCTAACGTCCCCGCCATCAGCAGACCCAACGCTGGTTGTATGAC
AGGCATCCAAATGTCCGTGAATTTATCAATCACAGACGCATCGCTCAACA
CAGACTTGAAAAACACCCCGGTTACGAACCAACCAAAAAAGGCCAAAATC
ACAAAGAAGTCAGCCACCAGCACTTTATTCAAGATCCCCCCGGCCTTGTC
TGCGAAAGCAGAGAAGCCTGTTAATTGTCCATCACTAACCTTGGCTTCCA
CTTCCTTCTTGCGGAAACGCGCAATGTCCTGTTGCAGTCGCTCTTGCAAA
TCAACCTCCCTTCCCCCTGTCTGCTGCGGGGTAGACGATGGTGGTGGTGA
AGACAAGGAGGGAGAGATGGCAGAGGATGCTACGGCACCATCGTTATCCT
TATCGTCATTTTCTTGCAGGAGCTCGGCGGGCAAGGGCACCTTGCGCTTC
CGCTTCCTGATGGGGCTTGCTTTGGAAGGCGCAGCGGCAGCATCTTCGTT
GTCGTCCGAGGCCGCATTTTTCAATGCGGCAAAAGAAACGGAGCGCGCAC
GAGCGGCAGCAGCCAGTAGTGGCCGATTCGATAGCGGCTCTTTGCATGTT
TGGGCAGGGAAATGTAAGCTACTATGTGCATAATTTTTCGAGAGCTTCCG
GTTGAGCTTTTTGACCTCCTCTGTATCTCTCACTTACTTGATGAGGGGTG
GGGGAGGGCAGGAAAAAACGCTTGAGCCACACATAGGGAAGCAAGAAAGA
GCACGAGCGACCACATAGCTCTGGCGGCCGACATGAGGCTATGATGGTAG
TGTGGATGGACATGGCGTGGGGAAATGGGTTACAACAGCAATCAAGAAAG
CACGAGAGCAGGAGCAACAAGACTCGG back to topprotein sequence of NO04G01930.1 >NO04G01930.1-protein ID=NO04G01930.1-protein|Name=NO04G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPVWNRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSA
TVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVR
ETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITK
GQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLF
DAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACV
AITVGLEEFSFEKADPFKAYLKDPSAFASAGGGGEAAAAAPAGDAKPAKE
EKEEEEADLGAGNMFGGGDGY* back to topmRNA from alignment at chr4:570445..573722- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01930.1 ID=NO04G01930.1|Name=NO04G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=3278bp|location=Sequence derived from alignment at chr4:570445..573722- (Nannochloropsis oceanica)
CACACGGAGGCCTCACGCGGCAGCCGTCTCTCTCTTCCCATGGCTGGCCA
TCCTCCTCCTTCCATCTCTCTACCCCTCTCTTCTTCTCCATTTACTCATG
GTCTCTTTGGAGGTTGTTCTTGTAGGGATAGGGAACATTTGGAATGTCTA
CGAGATTCTCTGCGGTGGCTTGGACAAGGCGGCTTCTGTTATGCACTCTC
TCTGCCTACCTTTCCGAGCCCTCCCCTCCCTTCTTCCTATATTCTTATCA
TGCAAGCCCTTTCATGCCTATCTCAAACCACCCCCACGTACCAATCCACA
CTACACAGACCACAGCGTCACCGGCAGCTGGTTAAATAGGGTTTGAGTCA
CTAACAGAACTCATTCCTCCAGCTACGGCTTCATCGTCTTCGCGACCACC
TCTACAAGAAACTACTTCAGGTGAGGACCGTGTGTGACGAGGTGCCTTCA
CTTGGAGCAAGGGACAACAGGCACAATTTGTATGTTTGGTTTCGATTGTC
ATGGTAGCAGTAACAGCAGGGATGGAGAGAGGATGCGGCGGTTCCCCGTC
CCGTGTCGCTTACTTTCCAGCTCGAGCACCCCAAAAGCACGATGGCTCCC
CCCCCCCCCTTCAATGTACTCTAGTCTTCCCCTGTCTGGAGCGCTGGTGC
ATGAATTGTCTCAGCTTCCAATAAATTTATCGTTTGGCTTATTTGATATT
TCCTCTTAACGCAAATCCATCCATCCCCGTCCTTGCTCCCCCCCTCGCCC
CCCCCCCCCCCCCCCGAACAGTCACCCCCTAATCAACCATGCCCGTCTGG
AACCGCGCCAAGAAGGAGGATTACTTCGAAAAGGTCGAAGAGCTCCTGGG
TTCCTACACCAAGGTCTTCATCGTCGGGGTCGACAATGTCGGCTCCAAGC
AGATGCAGCAGATTCGCCATGCCCTCCGCGGCAGCGCCACCGTCCTCATG
GGGAAGAACACGCGCATCCGGAAGGTCATCAACATGTTCCTCCGCAAAAA
CCCCGACCACCCTATCGAGCAGCTCCTTCAGTTCGTTGGCGGCAACGTCG
GCTTTGTCTTCACCAACGGCGAGCTCGGCCTGGTGCGTGAGACCGTGGAG
AAGAACCGGGTGCCAGCCCCTGCCCGTGTCGGGTCAACTGCCCCCTGTGA
TGTGATCATCCCCCCCGGCCCCACCGGCTGCGACCCCGGCCAGACCTCTT
TTTTCCAGGCCTTGCAAATCGCCACCAAGATTACCAAGGGGCAGATTGAG
ATAACCAGCGACGTGCAGATCCTGAAGGAAGGTGACAAGGTCGGCAATTC
CGAAGCCATCCTACTCCAGAAACTGAATATTCTCCCCTTCACTTACGGAC
TGGTCATCAAGACCATCTACGACAACGGCTCCCTCTTCGACGCCAAGGTC
CTGGATCTCACCGATGCTGACTTGGCCGCTAAGTTCGCCGTGGCCGTGCG
TAATGTAGCCGCTATCTCGCTCAAGCTTGGGTATCCTACCCTTGCCTCCC
TCCCTCATTCCATCGCCAATGCCTTCAAGGCTTGCGTTGCCATCACGGTG
GGCCTCGAGGAGTTCTCTTTCGAGAAGGCGGATCCGTTTAAGGCCTACTT
GAAGGACCCCTCCGCCTTCGCCTCTGCCGGAGGTGGTGGAGAGGCGGCCG
CTGCCGCTCCTGCAGGGGATGCCAAGCCGGCGAAGGAGGAGAAGGAAGAG
GAAGAGGCTGACCTTGGGGCTGGCAACATGTTCGGTGGAGGTGATGGATA
TTAAGGAGCGATGTGGGCCTTGTCTGATGCGTCGGAATTCTTGTTCTTCC
CGTCCCTCCCTTCTCCTTCTCTTTTTTTCGTCTTGTAACTGGCAATTGCT
TTTGGGAGGCAGGAAAGAGAGGGAAAGGTGGAGGGGGGACGCAGTAGGGT
AAAGATTGCAAGACACCGATGGTGCGCACTGTCCGCTGGCCCTACGGGAT
CCACTTGTTTCCGTGGAAAGGAGGTCGCAGGAAAGAGGAGAAAGAGGGAG
AGACTAAAAAAATGGAAGAAAAGTTGTGGTGGAAGTGAGACGGAGGGGTA
GGTTATAAATAACGGTGAGCCATAGCACAGCACACTTGATATTTGGGCCT
TTCTCGCTGGTGTGTCCTAACCAACGAAAGACAAGAAAGAAGAGAAGAAG
AAAAAGAGTAGAAGAAAAGGAAAATCGTTTTTTCATCTCAGCCCAGGCAC
CGACCACCATTAGCCTTGCCTTCTTCTTCTTGGTCCAGACCTTTAATTTT
AACTGCAATTACAAGTAATACGAGTCACACAAGTTTTCCCATTATCTCTC
CGTCCTCTCCCTCTCCTCCCTCCTATCCATTCTTTCTCCTCTCATCCATT
CCCTTCCTCTCGTTCGCCTCCTGCGTCCGCGCCGCAACATTGTTTAAAGC
TCCTACCCCTAACGTCCCCGCCATCAGCAGACCCAACGCTGGTTGTATGA
CAGGCATCCAAATGTCCGTGAATTTATCAATCACAGACGCATCGCTCAAC
ACAGACTTGAAAAACACCCCGGTTACGAACCAACCAAAAAAGGCCAAAAT
CACAAAGAAGTCAGCCACCAGCACTTTATTCAAGATCCCCCCGGCCTTGT
CTGCGAAAGCAGAGAAGCCTGTTAATTGTCCATCACTAACCTTGGCTTCC
ACTTCCTTCTTGCGGAAACGCGCAATGTCCTGTTGCAGTCGCTCTTGCAA
ATCAACCTCCCTTCCCCCTGTCTGCTGCGGGGTAGACGATGGTGGTGGTG
AAGACAAGGAGGGAGAGATGGCAGAGGATGCTACGGCACCATCGTTATCC
TTATCGTCATTTTCTTGCAGGAGCTCGGCGGGCAAGGGCACCTTGCGCTT
CCGCTTCCTGATGGGGCTTGCTTTGGAAGGCGCAGCGGCAGCATCTTCGT
TGTCGTCCGAGGCCGCATTTTTCAATGCGGCAAAAGAAACGGAGCGCGCA
CGAGCGGCAGCAGCCAGTAGTGGCCGATTCGATAGCGGCTCTTTGCATGT
TTGGGCAGGGAAATGTAAGCTACTATGTGCATAATTTTTCGAGAGCTTCC
GGTTGAGCTTTTTGACCTCCTCTGTATCTCTCACTTACTTGATGAGGGGT
GGGGGAGGGCAGGAAAAAACGCTTGAGCCACACATAGGGAAGCAAGAAAG
AGCACGAGCGACCACATAGCTCTGGCGGCCGACATGAGGCTATGATGGTA
GTGTGGATGGACATGGCGTGGGGAAATGGGTTACAACAGCAATCAAGAAA
GCACGAGAGCAGGAGCAACAAGACTCGG back to topCoding sequence (CDS) from alignment at chr4:570445..573722- >NO04G01930.1 ID=NO04G01930.1|Name=NO04G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr4:570445..573722- (Nannochloropsis oceanica)
ATGCCCGTCTGGAACCGCGCCAAGAAGGAGGATTACTTCGAAAAGGTCGA
AGAGCTCCTGGGTTCCTACACCAAGGTCTTCATCGTCGGGGTCGACAATG
TCGGCTCCAAGCAGATGCAGCAGATTCGCCATGCCCTCCGCGGCAGCGCC
ACCGTCCTCATGGGGAAGAACACGCGCATCCGGAAGGTCATCAACATGTT
CCTCCGCAAAAACCCCGACCACCCTATCGAGCAGCTCCTTCAGTTCGTTG
GCGGCAACGTCGGCTTTGTCTTCACCAACGGCGAGCTCGGCCTGGTGCGT
GAGACCGTGGAGAAGAACCGGGTGCCAGCCCCTGCCCGTGTCGGGTCAAC
TGCCCCCTGTGATGTGATCATCCCCCCCGGCCCCACCGGCTGCGACCCCG
GCCAGACCTCTTTTTTCCAGGCCTTGCAAATCGCCACCAAGATTACCAAG
GGGCAGATTGAGATAACCAGCGACGTGCAGATCCTGAAGGAAGGTGACAA
GGTCGGCAATTCCGAAGCCATCCTACTCCAGAAACTGAATATTCTCCCCT
TCACTTACGGACTGGTCATCAAGACCATCTACGACAACGGCTCCCTCTTC
GACGCCAAGGTCCTGGATCTCACCGATGCTGACTTGGCCGCTAAGTTCGC
CGTGGCCGTGCGTAATGTAGCCGCTATCTCGCTCAAGCTTGGGTATCCTA
CCCTTGCCTCCCTCCCTCATTCCATCGCCAATGCCTTCAAGGCTTGCGTT
GCCATCACGGTGGGCCTCGAGGAGTTCTCTTTCGAGAAGGCGGATCCGTT
TAAGGCCTACTTGAAGGACCCCTCCGCCTTCGCCTCTGCCGGAGGTGGTG
GAGAGGCGGCCGCTGCCGCTCCTGCAGGGGATGCCAAGCCGGCGAAGGAG
GAGAAGGAAGAGGAAGAGGCTGACCTTGGGGCTGGCAACATGTTCGGTGG
AGGTGATGGATATTAA back to top
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