NO04G01790, NO04G01790 (gene) Nannochloropsis oceanica

Overview
NameNO04G01790
Unique NameNO04G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1810
Alignment locationchr4:525524..527333 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 5A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:525524..527333 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO:0003746translation elongation factor activity
GO:0003723RNA binding
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006452translational frameshifting
GO:0045901positive regulation of translational elongation
GO:0045905positive regulation of translational termination
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR012340NA-bd_OB-fold
IPR001884Transl_elong_IF5A
IPR013185Transl_elong_KOW-like
IPR020189Transl_elong_IF5A_C
Homology
[Close]
BLAST of NO04G01790 vs. NCBI_GenBank
Match: OQR86337.1 (eukaryotic initiation factor [Achlya hypogyna])

HSP 1 Score: 211.8 bits (538), Expect = 1.500e-51
Identity = 103/153 (67.32%), Postives = 122/153 (79.74%), Query Frame = 0 
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKED 162
            EDY F  T AGAS  +PSEAGQ+KKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF  KK ED+VP+TH   VP V+R+EY LLDI D  ++SL+ D GETR+D+KLP  PEGF +EI   F+ GK LS+SVL ACGI+Q+IA KED
Sbjct:    4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGETREDIKLPAIPEGFAEEIRADFEAGKQLSLSVLRACGIEQIIAKKED 156
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BLAST of NO04G01790 vs. NCBI_GenBank
Match: XP_009526393.1 (hypothetical protein PHYSODRAFT_285912 [Phytophthora sojae] >EGZ17335.1 hypothetical protein PHYSODRAFT_285912 [Phytophthora sojae])

HSP 1 Score: 211.5 bits (537), Expect = 2.000e-51
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 0 
Query:   11 DYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKED 162
            D++F  T AGAS+ +PSEAGQI+KGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF  KK ED+VP+THTT VP V+R+EY LLDI +D F SL+ D GETR+D+KLP +PE F  EI   F DGK L ++VL ACG +Q+IA KED
Sbjct:    8 DFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGETREDIKLPTFPETFADEIRADFDDGKQLVLTVLKACGTEQIIAKKED 159
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BLAST of NO04G01790 vs. NCBI_GenBank
Match: XP_008620373.1 (translation initiation factor eIF-5A [Saprolegnia diclina VS20] >EQC26228.1 translation initiation factor eIF-5A [Saprolegnia diclina VS20])

HSP 1 Score: 210.7 bits (535), Expect = 3.400e-51
Identity = 102/153 (66.67%), Postives = 121/153 (79.08%), Query Frame = 0 
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKED 162
            EDY F  T AGAS  +PSEAGQ+KKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF  KK ED+VP+TH   VP V+R+EY LLDI D  ++SL+ D G+TR+D+KLP  PEGF  EI   F+ GK L+ISVL ACGI+Q+IA KED
Sbjct:    4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGDTREDIKLPSIPEGFGDEIRADFEAGKQLAISVLRACGIEQIIAKKED 156
[Close]
BLAST of NO04G01790 vs. NCBI_GenBank
Match: OQS07342.1 (eucarytic translation initiation factor 5A [Thraustotheca clavata])

HSP 1 Score: 210.7 bits (535), Expect = 3.400e-51
Identity = 104/152 (68.42%), Postives = 119/152 (78.29%), Query Frame = 0 
Query:   11 DYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKED 162
            DY    T AGAS  +PSEAGQIKKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF  KK ED+VP+THTT VP V R+EY LLDI D  ++SL+ D GETR+D+KLP  PEGF  EI   F  GK LS+SVL ACGI+Q+IA KED
Sbjct:    6 DYHIESTDAGASLTYPSEAGQIKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVTRAEYTLLDITDEDYVSLMDDSGETREDIKLPSIPEGFADEIRADFDAGKQLSLSVLRACGIEQIIAKKED 157
[Close]
BLAST of NO04G01790 vs. NCBI_GenBank
Match: XP_024581358.1 (translation elongation factor if5a [Plasmopara halstedii] >CEG44989.1 translation elongation factor if5a [Plasmopara halstedii])

HSP 1 Score: 208.8 bits (530), Expect = 1.300e-50
Identity = 103/162 (63.58%), Postives = 124/162 (76.54%), Query Frame = 0 
Query:    1 MAEEGAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKED 162
            MAEE      D+ F  T AGAS+ +P EAGQI+KGG+IMIKG PCKVVNVSTSKTGKHGHAK NFTA+DIF  KK ED+VP+THTT VP V+R+EY LLDI +D F SL+ D G+TR+D+KLP +P+ F  EI   F DGK L ++VL ACG +Q+IA KED
Sbjct:   35 MAEEE----HDFTFHSTDAGASETYPCEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGDTREDIKLPTFPDTFADEIRADFDDGKQLVVTVLKACGTEQIIAKKED 192
[Close]
BLAST of NO04G01790 vs. NCBI_GenBank
Match: XP_009840237.1 (translation elongation factor IF5A [Aphanomyces astaci] >ETV70278.1 translation elongation factor IF5A [Aphanomyces astaci])

HSP 1 Score: 204.5 bits (519), Expect = 2.500e-49
Identity = 96/153 (62.75%), Postives = 120/153 (78.43%), Query Frame = 0 
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKED 162
            EDY F  + AGAS+ +P EAGQ+KKGG+IMIKG PCKVV+++TSKTGKHGHAK NFTA+DIF  KK ED+VP++H   VP V R+EY LLDI D  F+SL+ D G+TR+D+KLP  PEGF +EI   F  GK L++SVL ACGI+Q++A KED
Sbjct:    4 EDYSFDSSDAGASETYPMEAGQVKKGGFIMIKGHPCKVVSIATSKTGKHGHAKCNFTALDIFTNKKYEDIVPSSHNCSVPFVTRAEYTLLDITDEDFVSLMDDNGDTREDIKLPLIPEGFGEEIRADFDAGKQLALSVLMACGIEQIVAKKED 156
[Close]
BLAST of NO04G01790 vs. NCBI_GenBank
Match: XP_008865153.1 (translation elongation factor IF5A [Aphanomyces invadans] >ETW07078.1 translation elongation factor IF5A [Aphanomyces invadans])

HSP 1 Score: 203.0 bits (515), Expect = 7.200e-49
Identity = 95/153 (62.09%), Postives = 119/153 (77.78%), Query Frame = 0 
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKED 162
            EDY F  + AGAS+ +P EAGQ+KKGG+IMIKG PCKVV+++TSKTGKHGHAK NFTA+DIF  KK ED+VP++H   VP V R+EY LLDI D  F+SL+ + G+TR+D+KLP  PEGF  EI   F  GK L++SVL ACGI+Q++A KED
Sbjct:    4 EDYSFESSDAGASETYPMEAGQVKKGGFIMIKGHPCKVVSIATSKTGKHGHAKCNFTALDIFTNKKYEDIVPSSHNCSVPFVTRAEYTLLDITDEDFVSLMDENGDTREDIKLPLIPEGFGDEIRADFDAGKQLAVSVLKACGIEQIVAKKED 156
[Close]
BLAST of NO04G01790 vs. NCBI_GenBank
Match: PQM57560.1 (translation initiation factor IF-5A [Rhodobacteraceae bacterium])

HSP 1 Score: 188.7 bits (478), Expect = 1.400e-44
Identity = 89/149 (59.73%), Postives = 114/149 (76.51%), Query Frame = 0 
Query:   14 FSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKED 162
            F  T AGAS+  P EAGQI+KGGYI IKGRPCKV +VSTSKTGKHGHAK NF A DIFNGKK+ED+VP++H T VPNV +SEY LLDI D  +L+L+TD GETR+DL++P YP   +++I   F+ G+ L + V+ A G + V++ K+D
Sbjct:    7 FESTDAGASETIPMEAGQIRKGGYICIKGRPCKVTSVSTSKTGKHGHAKCNFVATDIFNGKKLEDIVPSSHGTTVPNVFKSEYSLLDISDEDYLTLMTDNGETREDLQMPSYPPELEEQIRGGFEQGEQLILGVVKAMGEEHVMSCKKD 155
[Close]
BLAST of NO04G01790 vs. NCBI_GenBank
Match: XP_006391021.1 (eukaryotic translation initiation factor 5A-3 [Eutrema salsugineum] >XP_024006707.1 eukaryotic translation initiation factor 5A-3 [Eutrema salsugineum] >ESQ28307.1 hypothetical protein EUTSA_v10019263mg [Eutrema salsugineum])

HSP 1 Score: 186.0 bits (471), Expect = 9.000e-44
Identity = 91/154 (59.09%), Postives = 118/154 (76.62%), Query Frame = 0 
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKEDA 163
            E++ F  + AGAS  +P +AG I+KGGYI+IKGRPCKVV VSTSKTGKHGHAK +F AIDIF  KK+ED+VP++H   VP+VNR++YQL+DI EDGF+SLLTD G T+DDLKLP   E    ++   F++GK + +SV+SA G +Q+ A KE A
Sbjct:    4 EEHHFESSDAGASKTYPQQAGNIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPT-DEALLTQLKAGFEEGKDIVVSVMSAMGEEQMCALKEVA 156
[Close]
BLAST of NO04G01790 vs. NCBI_GenBank
Match: XP_006417074.1 (eukaryotic translation initiation factor 5A-1 [Eutrema salsugineum] >ESQ35427.1 hypothetical protein EUTSA_v10008978mg [Eutrema salsugineum])

HSP 1 Score: 185.3 bits (469), Expect = 1.500e-43
Identity = 90/152 (59.21%), Postives = 117/152 (76.97%), Query Frame = 0 
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKE 161
            E++ F  + AGAS  +P +AG I+K GYI+IKGRPCKVV VSTSKTGKHGHAK +F AIDIF  KK+ED+VP++H   VP+VNR++YQL+DI EDG++SLLTD G T+DDLKLP   +   Q+I   F+DGK L +SV+SA G +Q+ A K+
Sbjct:    4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPT-DDALLQQIKSGFEDGKDLVVSVMSAMGEEQINALKD 154
The following BLAST results are available for this feature:
BLAST of NO04G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR86337.11.500e-5167.32eukaryotic initiation factor [Achlya hypogyna][more]
XP_009526393.12.000e-5166.45hypothetical protein PHYSODRAFT_285912 [Phytophtho... [more]
XP_008620373.13.400e-5166.67translation initiation factor eIF-5A [Saprolegnia ... [more]
OQS07342.13.400e-5168.42eucarytic translation initiation factor 5A [Thraus... [more]
XP_024581358.11.300e-5063.58translation elongation factor if5a [Plasmopara hal... [more]
XP_009840237.12.500e-4962.75translation elongation factor IF5A [Aphanomyces as... [more]
XP_008865153.17.200e-4962.09translation elongation factor IF5A [Aphanomyces in... [more]
PQM57560.11.400e-4459.73translation initiation factor IF-5A [Rhodobacterac... [more]
XP_006391021.19.000e-4459.09eukaryotic translation initiation factor 5A-3 [Eut... [more]
XP_006417074.11.500e-4359.21eukaryotic translation initiation factor 5A-1 [Eut... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009631NSK009631Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01790.1NO04G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578559gene_1966Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g63gene2006Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01790.1NO04G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01790 ID=NO04G01790|Name=NO04G01790|organism=Nannochloropsis oceanica|type=gene|length=1810bp
CACATCCACGCACCCACCACACATTCTTCTTTGTATGCTTCTCATGACGC
CTTTCCAGACACACACTCGGATCATTCCCTTTCTATTCAAGCAGGCACAG
TTTGCATGGAATAATGTTGGCGCTTATGGTGGTGGTGGGCTGGCTTCAGG
ACAAGAACACGGCTCGTGGCTGTGGCTGAGACGCGTTGGAAGCCAGACAG
CCTCCCCACCTGCCTCTCTGATACTACGGCTGCCCATGGCTGCCATTTCT
AGTATCAGTATCACGCAAGAGCAGACGCTAGTCATGGAGAAAATAATGCA
ATCTGTTTAAATGCTCCTTATGGGCAGCGTATGTGCGGCTGTGATTAAAG
ACGCGCCGCCGTCCTGGCATCAGGATTGATAATGGTCGCTGCACTGGACT
GAGAGGGTGGTGACGATCCTGTGTGTGCCACGCATATATACCAAGGGCTT
TCTCATTCATCACTGTCCGCACTTAAGACTTTATTGTTATTTTCGTGTCA
GTGGTAGTAGAGATGCCGTTTGTTCAATGCGTGCAATAACCCCGAAATGC
TCTGTTATTTCTCACATCCATCTACCCACCCTACCCTCTCCACGCCCAGA
CCTCCCCATCCCACCTTACCCAAAAAGCAATCATGGCTGAGGAGGGCGCG
GCAACCATCGAGGACTATGACTTCTCCGGGACCACGGCGGGGGCTTCAGA
TGTTTTCCCTTCCGAGGCCGGCCAGATCAAGAAGGGCGGGTACATCATGA
TCAAAGGGCGTCCTTGCAAGGTCGTCAATGTGTCTACCTCTAAGACGGGG
AAGCACGGGCACGCCAAGGCCAACTTCACGGCAATTGACATTTTTAACGG
GAAGAAGGTGGAGGACGTGGTGCCCACAACGCATACCACATATGTGCCCA
ACGTGAATCGCTCTGAGTACCAGCTTTTGGACATAGAGGATGGCTTCCTC
TCGCTGCTGACGGATGGGGGAGAAACCCGCGATGACTTGAAGCTGCCTGA
TTACCCGGAGGGATTCGACCAGGAGATTCTTAAGGCGTTCAAGGACGGGA
AGTCCCTTTCGATCTCTGTGCTGTCGGCGTGTGGCATTGACCAGGTCATC
GCTTACAAGgtgggtgatggagggaggaagggagggagggaggggctttt
tcgaattgttatggagggaccgtctctgcaatgtattgtaaacaatcaca
tatttgacttaacagaaatgcgacgggaagggggcgaaggggggggacgg
aacgaaaaatctggacttgctatatcatgttgctggtcctcacatttttg
ctcctcttgttggtttttggtttccctacttcgacagGAGGACGCGTAAA
CCCCCACGCACGATAGTAGACGACGATGAACAGGCGACGACAAAGAGGGT
GCCGGCCTCGGTAGCTTGAAGGCGAGAAGGAATCTTAACGGCAGAGGGAG
GACACGAGTGTGCTGTGGCAGTAAGTGGGTAGCATCTTGCATACCGTTTG
ATATTGTGGAGGAAGGAGGGAGGGATGGAGGGAGGGGCGAAAGGAGAGGA
TTTGTCGAATGTGCTTTGTTTTTGCCCCATTCTGGCATTATTTCCTTTGA
GATATGAAGGGGCATAGCGTGATGGAAGGGCGGAAGGAAGGGAGGCAGGG
AGGGATGGAGGGAGGGGGGCAAGGCCGAAGGTGTTAGCTAGCAATTGGGA
TAAACGGAGCGGGCGGGAACGGAACTCGGAAACAAAACGAAAGAACGAAC
AATCCAAGCGATCATTTTGATCATTTTGATAAGAGGCCTTCTATGCAAGG
GCCGACAAGC
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protein sequence of NO04G01790.1

>NO04G01790.1-protein ID=NO04G01790.1-protein|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MAEEGAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNV
STSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLD
IEDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSAC
GIDQVIAYKEDA*
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Synonyms
Publications