NO04G01790.1, NO04G01790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01790.1
Unique NameNO04G01790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1582
Alignment locationchr4:525524..527333 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:525524..527333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01790.1 vs.
Match: EWM28594.1 (translation initiation factor eif-5a [Nannochloropsis gaditana])

HSP 1 Score: 310.5 bits (794), Expect = 3.200e-81
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 0
Query:    1 MAEEGAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKEDA 163
            MAEE AATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGF+SLL + G TRDDLKLPDYPEGFDQEILKA++DGKSLS+SVLSACGIDQ+IAYKE+A
Sbjct:    1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162          
The following BLAST results are available for this feature:
BLAST of NO04G01790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28594.13.200e-8193.21translation initiation factor eif-5a [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01790NO04G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01790.1NO04G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01790.1.cds1NO04G01790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01790.1.cds2NO04G01790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01790.1 ID=NO04G01790.1|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp
CACATCCACGCACCCACCACACATTCTTCTTTGTATGCTTCTCATGACGC
CTTTCCAGACACACACTCGGATCATTCCCTTTCTATTCAAGCAGGCACAG
TTTGCATGGAATAATGTTGGCGCTTATGGTGGTGGTGGGCTGGCTTCAGG
ACAAGAACACGGCTCGTGGCTGTGGCTGAGACGCGTTGGAAGCCAGACAG
CCTCCCCACCTGCCTCTCTGATACTACGGCTGCCCATGGCTGCCATTTCT
AGTATCAGTATCACGCAAGAGCAGACGCTAGTCATGGAGAAAATAATGCA
ATCTGTTTAAATGCTCCTTATGGGCAGCGTATGTGCGGCTGTGATTAAAG
ACGCGCCGCCGTCCTGGCATCAGGATTGATAATGGTCGCTGCACTGGACT
GAGAGGGTGGTGACGATCCTGTGTGTGCCACGCATATATACCAAGGGCTT
TCTCATTCATCACTGTCCGCACTTAAGACTTTATTGTTATTTTCGTGTCA
GTGGTAGTAGAGATGCCGTTTGTTCAATGCGTGCAATAACCCCGAAATGC
TCTGTTATTTCTCACATCCATCTACCCACCCTACCCTCTCCACGCCCAGA
CCTCCCCATCCCACCTTACCCAAAAAGCAATCATGGCTGAGGAGGGCGCG
GCAACCATCGAGGACTATGACTTCTCCGGGACCACGGCGGGGGCTTCAGA
TGTTTTCCCTTCCGAGGCCGGCCAGATCAAGAAGGGCGGGTACATCATGA
TCAAAGGGCGTCCTTGCAAGGTCGTCAATGTGTCTACCTCTAAGACGGGG
AAGCACGGGCACGCCAAGGCCAACTTCACGGCAATTGACATTTTTAACGG
GAAGAAGGTGGAGGACGTGGTGCCCACAACGCATACCACATATGTGCCCA
ACGTGAATCGCTCTGAGTACCAGCTTTTGGACATAGAGGATGGCTTCCTC
TCGCTGCTGACGGATGGGGGAGAAACCCGCGATGACTTGAAGCTGCCTGA
TTACCCGGAGGGATTCGACCAGGAGATTCTTAAGGCGTTCAAGGACGGGA
AGTCCCTTTCGATCTCTGTGCTGTCGGCGTGTGGCATTGACCAGGTCATC
GCTTACAAGGAGGACGCGTAAACCCCCACGCACGATAGTAGACGACGATG
AACAGGCGACGACAAAGAGGGTGCCGGCCTCGGTAGCTTGAAGGCGAGAA
GGAATCTTAACGGCAGAGGGAGGACACGAGTGTGCTGTGGCAGTAAGTGG
GTAGCATCTTGCATACCGTTTGATATTGTGGAGGAAGGAGGGAGGGATGG
AGGGAGGGGCGAAAGGAGAGGATTTGTCGAATGTGCTTTGTTTTTGCCCC
ATTCTGGCATTATTTCCTTTGAGATATGAAGGGGCATAGCGTGATGGAAG
GGCGGAAGGAAGGGAGGCAGGGAGGGATGGAGGGAGGGGGGCAAGGCCGA
AGGTGTTAGCTAGCAATTGGGATAAACGGAGCGGGCGGGAACGGAACTCG
GAAACAAAACGAAAGAACGAACAATCCAAGCGATCATTTTGATCATTTTG
ATAAGAGGCCTTCTATGCAAGGGCCGACAAGC
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protein sequence of NO04G01790.1

>NO04G01790.1-protein ID=NO04G01790.1-protein|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MAEEGAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNV
STSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLD
IEDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSAC
GIDQVIAYKEDA*
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mRNA from alignment at chr4:525524..527333+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01790.1 ID=NO04G01790.1|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp|location=Sequence derived from alignment at chr4:525524..527333+ (Nannochloropsis oceanica)
CACATCCACGCACCCACCACACATTCTTCTTTGTATGCTTCTCATGACGC CTTTCCAGACACACACTCGGATCATTCCCTTTCTATTCAAGCAGGCACAG TTTGCATGGAATAATGTTGGCGCTTATGGTGGTGGTGGGCTGGCTTCAGG ACAAGAACACGGCTCGTGGCTGTGGCTGAGACGCGTTGGAAGCCAGACAG CCTCCCCACCTGCCTCTCTGATACTACGGCTGCCCATGGCTGCCATTTCT AGTATCAGTATCACGCAAGAGCAGACGCTAGTCATGGAGAAAATAATGCA ATCTGTTTAAATGCTCCTTATGGGCAGCGTATGTGCGGCTGTGATTAAAG ACGCGCCGCCGTCCTGGCATCAGGATTGATAATGGTCGCTGCACTGGACT GAGAGGGTGGTGACGATCCTGTGTGTGCCACGCATATATACCAAGGGCTT TCTCATTCATCACTGTCCGCACTTAAGACTTTATTGTTATTTTCGTGTCA GTGGTAGTAGAGATGCCGTTTGTTCAATGCGTGCAATAACCCCGAAATGC TCTGTTATTTCTCACATCCATCTACCCACCCTACCCTCTCCACGCCCAGA CCTCCCCATCCCACCTTACCCAAAAAGCAATCATGGCTGAGGAGGGCGCG GCAACCATCGAGGACTATGACTTCTCCGGGACCACGGCGGGGGCTTCAGA TGTTTTCCCTTCCGAGGCCGGCCAGATCAAGAAGGGCGGGTACATCATGA TCAAAGGGCGTCCTTGCAAGGTCGTCAATGTGTCTACCTCTAAGACGGGG AAGCACGGGCACGCCAAGGCCAACTTCACGGCAATTGACATTTTTAACGG GAAGAAGGTGGAGGACGTGGTGCCCACAACGCATACCACATATGTGCCCA ACGTGAATCGCTCTGAGTACCAGCTTTTGGACATAGAGGATGGCTTCCTC TCGCTGCTGACGGATGGGGGAGAAACCCGCGATGACTTGAAGCTGCCTGA TTACCCGGAGGGATTCGACCAGGAGATTCTTAAGGCGTTCAAGGACGGGA AGTCCCTTTCGATCTCTGTGCTGTCGGCGTGTGGCATTGACCAGGTCATC GCTTACAAGGTGGGTGATGGAGGGAGGAAGGGAGGGAGGGAGGGGCTTTT TCGAATTGTTATGGAGGGACCGTCTCTGCAATGTATTGTAAACAATCACA TATTTGACTTAACAGAAATGCGACGGGAAGGGGGCGAAGGGGGGGGACGG AACGAAAAATCTGGACTTGCTATATCATGTTGCTGGTCCTCACATTTTTG CTCCTCTTGTTGGTTTTTGGTTTCCCTACTTCGACAGGAGGACGCGTAAA CCCCCACGCACGATAGTAGACGACGATGAACAGGCGACGACAAAGAGGGT GCCGGCCTCGGTAGCTTGAAGGCGAGAAGGAATCTTAACGGCAGAGGGAG GACACGAGTGTGCTGTGGCAGTAAGTGGGTAGCATCTTGCATACCGTTTG ATATTGTGGAGGAAGGAGGGAGGGATGGAGGGAGGGGCGAAAGGAGAGGA TTTGTCGAATGTGCTTTGTTTTTGCCCCATTCTGGCATTATTTCCTTTGA GATATGAAGGGGCATAGCGTGATGGAAGGGCGGAAGGAAGGGAGGCAGGG AGGGATGGAGGGAGGGGGGCAAGGCCGAAGGTGTTAGCTAGCAATTGGGA TAAACGGAGCGGGCGGGAACGGAACTCGGAAACAAAACGAAAGAACGAAC AATCCAAGCGATCATTTTGATCATTTTGATAAGAGGCCTTCTATGCAAGG GCCGACAAGC
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Coding sequence (CDS) from alignment at chr4:525524..527333+

>NO04G01790.1 ID=NO04G01790.1|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr4:525524..527333+ (Nannochloropsis oceanica)
ATGGCTGAGGAGGGCGCGGCAACCATCGAGGACTATGACTTCTCCGGGAC
CACGGCGGGGGCTTCAGATGTTTTCCCTTCCGAGGCCGGCCAGATCAAGA
AGGGCGGGTACATCATGATCAAAGGGCGTCCTTGCAAGGTCGTCAATGTG
TCTACCTCTAAGACGGGGAAGCACGGGCACGCCAAGGCCAACTTCACGGC
AATTGACATTTTTAACGGGAAGAAGGTGGAGGACGTGGTGCCCACAACGC
ATACCACATATGTGCCCAACGTGAATCGCTCTGAGTACCAGCTTTTGGAC
ATAGAGGATGGCTTCCTCTCGCTGCTGACGGATGGGGGAGAAACCCGCGA
TGACTTGAAGCTGCCTGATTACCCGGAGGGATTCGACCAGGAGATTCTTA
AGGCGTTCAAGGACGGGAAGTCCCTTTCGATCTCTGTGCTGTCGGCGTGT
GGCATTGACCAGGTCATCGCTTACAAGGAGGACGCGTAA
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Synonyms
Publications