|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:525524..527333 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01790.1 vs.
Match: EWM28594.1 (translation initiation factor eif-5a [Nannochloropsis gaditana]) HSP 1 Score: 310.5 bits (794), Expect = 3.200e-81 Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 0
Query: 1 MAEEGAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSACGIDQVIAYKEDA 163
MAEE AATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGF+SLL + G TRDDLKLPDYPEGFDQEILKA++DGKSLS+SVLSACGIDQ+IAYKE+A
Sbjct: 1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01790.1 ID=NO04G01790.1|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp CACATCCACGCACCCACCACACATTCTTCTTTGTATGCTTCTCATGACGC CTTTCCAGACACACACTCGGATCATTCCCTTTCTATTCAAGCAGGCACAG TTTGCATGGAATAATGTTGGCGCTTATGGTGGTGGTGGGCTGGCTTCAGG ACAAGAACACGGCTCGTGGCTGTGGCTGAGACGCGTTGGAAGCCAGACAG CCTCCCCACCTGCCTCTCTGATACTACGGCTGCCCATGGCTGCCATTTCT AGTATCAGTATCACGCAAGAGCAGACGCTAGTCATGGAGAAAATAATGCA ATCTGTTTAAATGCTCCTTATGGGCAGCGTATGTGCGGCTGTGATTAAAG ACGCGCCGCCGTCCTGGCATCAGGATTGATAATGGTCGCTGCACTGGACT GAGAGGGTGGTGACGATCCTGTGTGTGCCACGCATATATACCAAGGGCTT TCTCATTCATCACTGTCCGCACTTAAGACTTTATTGTTATTTTCGTGTCA GTGGTAGTAGAGATGCCGTTTGTTCAATGCGTGCAATAACCCCGAAATGC TCTGTTATTTCTCACATCCATCTACCCACCCTACCCTCTCCACGCCCAGA CCTCCCCATCCCACCTTACCCAAAAAGCAATCATGGCTGAGGAGGGCGCG GCAACCATCGAGGACTATGACTTCTCCGGGACCACGGCGGGGGCTTCAGA TGTTTTCCCTTCCGAGGCCGGCCAGATCAAGAAGGGCGGGTACATCATGA TCAAAGGGCGTCCTTGCAAGGTCGTCAATGTGTCTACCTCTAAGACGGGG AAGCACGGGCACGCCAAGGCCAACTTCACGGCAATTGACATTTTTAACGG GAAGAAGGTGGAGGACGTGGTGCCCACAACGCATACCACATATGTGCCCA ACGTGAATCGCTCTGAGTACCAGCTTTTGGACATAGAGGATGGCTTCCTC TCGCTGCTGACGGATGGGGGAGAAACCCGCGATGACTTGAAGCTGCCTGA TTACCCGGAGGGATTCGACCAGGAGATTCTTAAGGCGTTCAAGGACGGGA AGTCCCTTTCGATCTCTGTGCTGTCGGCGTGTGGCATTGACCAGGTCATC GCTTACAAGGAGGACGCGTAAACCCCCACGCACGATAGTAGACGACGATG AACAGGCGACGACAAAGAGGGTGCCGGCCTCGGTAGCTTGAAGGCGAGAA GGAATCTTAACGGCAGAGGGAGGACACGAGTGTGCTGTGGCAGTAAGTGG GTAGCATCTTGCATACCGTTTGATATTGTGGAGGAAGGAGGGAGGGATGG AGGGAGGGGCGAAAGGAGAGGATTTGTCGAATGTGCTTTGTTTTTGCCCC ATTCTGGCATTATTTCCTTTGAGATATGAAGGGGCATAGCGTGATGGAAG GGCGGAAGGAAGGGAGGCAGGGAGGGATGGAGGGAGGGGGGCAAGGCCGA AGGTGTTAGCTAGCAATTGGGATAAACGGAGCGGGCGGGAACGGAACTCG GAAACAAAACGAAAGAACGAACAATCCAAGCGATCATTTTGATCATTTTG ATAAGAGGCCTTCTATGCAAGGGCCGACAAGC back to topprotein sequence of NO04G01790.1 >NO04G01790.1-protein ID=NO04G01790.1-protein|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp MAEEGAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNV STSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLD IEDGFLSLLTDGGETRDDLKLPDYPEGFDQEILKAFKDGKSLSISVLSAC GIDQVIAYKEDA* back to topmRNA from alignment at chr4:525524..527333+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01790.1 ID=NO04G01790.1|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp|location=Sequence derived from alignment at chr4:525524..527333+ (Nannochloropsis oceanica) CACATCCACGCACCCACCACACATTCTTCTTTGTATGCTTCTCATGACGC
CTTTCCAGACACACACTCGGATCATTCCCTTTCTATTCAAGCAGGCACAG
TTTGCATGGAATAATGTTGGCGCTTATGGTGGTGGTGGGCTGGCTTCAGG
ACAAGAACACGGCTCGTGGCTGTGGCTGAGACGCGTTGGAAGCCAGACAG
CCTCCCCACCTGCCTCTCTGATACTACGGCTGCCCATGGCTGCCATTTCT
AGTATCAGTATCACGCAAGAGCAGACGCTAGTCATGGAGAAAATAATGCA
ATCTGTTTAAATGCTCCTTATGGGCAGCGTATGTGCGGCTGTGATTAAAG
ACGCGCCGCCGTCCTGGCATCAGGATTGATAATGGTCGCTGCACTGGACT
GAGAGGGTGGTGACGATCCTGTGTGTGCCACGCATATATACCAAGGGCTT
TCTCATTCATCACTGTCCGCACTTAAGACTTTATTGTTATTTTCGTGTCA
GTGGTAGTAGAGATGCCGTTTGTTCAATGCGTGCAATAACCCCGAAATGC
TCTGTTATTTCTCACATCCATCTACCCACCCTACCCTCTCCACGCCCAGA
CCTCCCCATCCCACCTTACCCAAAAAGCAATCATGGCTGAGGAGGGCGCG
GCAACCATCGAGGACTATGACTTCTCCGGGACCACGGCGGGGGCTTCAGA
TGTTTTCCCTTCCGAGGCCGGCCAGATCAAGAAGGGCGGGTACATCATGA
TCAAAGGGCGTCCTTGCAAGGTCGTCAATGTGTCTACCTCTAAGACGGGG
AAGCACGGGCACGCCAAGGCCAACTTCACGGCAATTGACATTTTTAACGG
GAAGAAGGTGGAGGACGTGGTGCCCACAACGCATACCACATATGTGCCCA
ACGTGAATCGCTCTGAGTACCAGCTTTTGGACATAGAGGATGGCTTCCTC
TCGCTGCTGACGGATGGGGGAGAAACCCGCGATGACTTGAAGCTGCCTGA
TTACCCGGAGGGATTCGACCAGGAGATTCTTAAGGCGTTCAAGGACGGGA
AGTCCCTTTCGATCTCTGTGCTGTCGGCGTGTGGCATTGACCAGGTCATC
GCTTACAAGGTGGGTGATGGAGGGAGGAAGGGAGGGAGGGAGGGGCTTTT
TCGAATTGTTATGGAGGGACCGTCTCTGCAATGTATTGTAAACAATCACA
TATTTGACTTAACAGAAATGCGACGGGAAGGGGGCGAAGGGGGGGGACGG
AACGAAAAATCTGGACTTGCTATATCATGTTGCTGGTCCTCACATTTTTG
CTCCTCTTGTTGGTTTTTGGTTTCCCTACTTCGACAGGAGGACGCGTAAA
CCCCCACGCACGATAGTAGACGACGATGAACAGGCGACGACAAAGAGGGT
GCCGGCCTCGGTAGCTTGAAGGCGAGAAGGAATCTTAACGGCAGAGGGAG
GACACGAGTGTGCTGTGGCAGTAAGTGGGTAGCATCTTGCATACCGTTTG
ATATTGTGGAGGAAGGAGGGAGGGATGGAGGGAGGGGCGAAAGGAGAGGA
TTTGTCGAATGTGCTTTGTTTTTGCCCCATTCTGGCATTATTTCCTTTGA
GATATGAAGGGGCATAGCGTGATGGAAGGGCGGAAGGAAGGGAGGCAGGG
AGGGATGGAGGGAGGGGGGCAAGGCCGAAGGTGTTAGCTAGCAATTGGGA
TAAACGGAGCGGGCGGGAACGGAACTCGGAAACAAAACGAAAGAACGAAC
AATCCAAGCGATCATTTTGATCATTTTGATAAGAGGCCTTCTATGCAAGG
GCCGACAAGC back to topCoding sequence (CDS) from alignment at chr4:525524..527333+ >NO04G01790.1 ID=NO04G01790.1|Name=NO04G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr4:525524..527333+ (Nannochloropsis oceanica) ATGGCTGAGGAGGGCGCGGCAACCATCGAGGACTATGACTTCTCCGGGAC CACGGCGGGGGCTTCAGATGTTTTCCCTTCCGAGGCCGGCCAGATCAAGA AGGGCGGGTACATCATGATCAAAGGGCGTCCTTGCAAGGTCGTCAATGTG TCTACCTCTAAGACGGGGAAGCACGGGCACGCCAAGGCCAACTTCACGGC AATTGACATTTTTAACGGGAAGAAGGTGGAGGACGTGGTGCCCACAACGC ATACCACATATGTGCCCAACGTGAATCGCTCTGAGTACCAGCTTTTGGAC ATAGAGGATGGCTTCCTCTCGCTGCTGACGGATGGGGGAGAAACCCGCGA TGACTTGAAGCTGCCTGATTACCCGGAGGGATTCGACCAGGAGATTCTTA AGGCGTTCAAGGACGGGAAGTCCCTTTCGATCTCTGTGCTGTCGGCGTGT GGCATTGACCAGGTCATCGCTTACAAGGAGGACGCGTAA back to top
|