NO04G01770, NO04G01770 (gene) Nannochloropsis oceanica

Overview
NameNO04G01770
Unique NameNO04G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1740
Alignment locationchr4:521827..523566 +

Link to JBrowse

Properties
Property NameValue
Description26s proteasome regulatory subunit n7
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:521827..523566 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0030234enzyme regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR035268PSMD6
IPR01958526S_proteasome_reg_su-Rpn7
IPR000717PCI_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: EWM28571.1 (26s proteasome regulatory subunit n7 [Nannochloropsis gaditana])

HSP 1 Score: 643.3 bits (1658), Expect = 5.300e-181
Identity = 338/414 (81.64%), Postives = 377/414 (91.06%), Query Frame = 0 
Query:    1 MATEDTTTPATATKKPSADGKPA--VEDDEDPKHVPDMALAQDLYLLELAQSKPEEVPDVAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARM 413
            MA ED    ++ TK P+   + +   E++E+ K VPDMALAQDL+LLELAQSKP+EVPD+ EV  RVLA IKA+KAEPLYTSVCVEKLGWPVD ALQAELKASNEAEL+ IEEQLRVATESSGDMEVLDA+IAREKF+ARIGNKTAA AAADEIL KPKISTGK+IDA MDKVRLGLFFRD EATKENLE+AKKLVEDGGDWDRRNRLKVYEA+ALIT RSLKKA+ELLLDCIATFTCVEL TY QFIFYAV+TNLLYLERT LKKKLVDGPEVIAVLR+ PALGRLLN+LYDCDYRAFF ALVEVTP+LTRDRY +PH+R++VRE+RVLVYSQFLESYKSVR+ASMA++FG+ V+FLD+ELSRFIA+GRLSAKIDKVGGVVET RPD+KNAQY EVV++GD LLNRLSKLAR+
Sbjct:    1 MAVEDI---SSHTKPPALGNESSGLPEEEEERKAVPDMALAQDLHLLELAQSKPDEVPDLEEVTNRVLAVIKAEKAEPLYTSVCVEKLGWPVDAALQAELKASNEAELAEIEEQLRVATESSGDMEVLDAMIAREKFFARIGNKTAAYAAADEILTKPKISTGKRIDAAMDKVRLGLFFRDTEATKENLERAKKLVEDGGDWDRRNRLKVYEAVALITTRSLKKAAELLLDCIATFTCVELTTYEQFIFYAVITNLLYLERTTLKKKLVDGPEVIAVLREKPALGRLLNSLYDCDYRAFFQALVEVTPELTRDRYMSPHLRLLVREMRVLVYSQFLESYKSVRVASMADAFGISVDFLDRELSRFIAAGRLSAKIDKVGGVVETRRPDSKNAQYLEVVRDGDALLNRLSKLARL 411
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: CBN73890.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 393.3 bits (1009), Expect = 9.500e-106
Identity = 212/383 (55.35%), Postives = 268/383 (69.97%), Query Frame = 0 
Query:   33 VPDMALAQDLYLLELAQSKPEEVPDVAEVRTRVLASIKADKAEPLYTSVCVEKLG-WPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMVD 415
            VPDM LAQ  + + + Q  P            +L ++K     P Y S+C +    +P+D AL A++K  NEAE   I E L+ A E  GDMEVLDA     K +AR+G+K +A AA + I  K KI TGKKIDA+M K R+  F  D    K  LE AKK+++ GGDWDRRNRLKVYEAL LIT+R +K A+ LLL+C++TFTC EL +Y  FI Y VVTN+L L RT LKKK+VDGPEV+AV+ ++P +  L+N+LYDC YR F  A+VE+   L  DRY A H   +VRELR+L Y+QFL++YKSV L +MA +FGVG  FLDKELSRFIA+GRL+AKIDKVGGVVET+RPD+KNAQYQ  +K+GDLLLNR+ KL R+VD
Sbjct:   40 VPDMNLAQRCW-VAVHQQDP-------AAAASILDTVKERNMGPWYASLCHQHPSLFPLDAALAAKMKEVNEAEKERISETLKAAEEGEGDMEVLDAQFEMAKMWARVGDKASAYAAYETITEKAKIFTGKKIDAIMAKTRVAFFHLDTPQVKAGLEAAKKMIDLGGDWDRRNRLKVYEALHLITSRDIKGAATLLLECVSTFTCTELCSYNDFILYTVVTNILTLPRTTLKKKIVDGPEVLAVINEIPNISALVNSLYDCRYRDFMMAIVELNGQLENDRYFATHSTYLVRELRILAYTQFLDAYKSVVLGTMATAFGVGEPFLDKELSRFIAAGRLNAKIDKVGGVVETNRPDSKNAQYQACIKQGDLLLNRVQKLGRVVD 414
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: XP_009032786.1 (hypothetical protein AURANDRAFT_19506 [Aureococcus anophagefferens] >EGB13195.1 hypothetical protein AURANDRAFT_19506 [Aureococcus anophagefferens])

HSP 1 Score: 384.0 bits (985), Expect = 5.800e-103
Identity = 194/354 (54.80%), Postives = 261/354 (73.73%), Query Frame = 0 
Query:   60 EVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMV 414
            E+   + A+I+  +  P Y  VC  K GWPVD AL   +KA N AEL+ +  +   A ++ GDMEVLDAL    KF+AR+G K  A AA D I  +PKISTGK+IDA+M K+R+ LFF D  A KE L +AKK+ EDGGDWDR NRL VYE++ +I  RS++ A+  L+  +ATFTCVEL TY +F+FYAVVTNLL + R +LKKK++DGPEV+ +++ +P L  L+ +LY+C+Y  FF  +  + P L  DRY + H R +VRELRVLVY+QFL++YK+V LASMAE+FGVGV+FLD EL+RFI+ GRL+AK+DKV  VVET+RPD K+ +YQ+++K+GD+LLNR+ +LAR V
Sbjct:   17 ELEKEIRATIEKGEMGPYYEHVCA-KFGWPVDAALLEGMKAKNAAELAALVAKKEDAEKNQGDMEVLDALFDAVKFHARVGAKAEAYAACDAIRDRPKISTGKRIDALMMKIRVSLFFVDVAACKEQLAEAKKMAEDGGDWDRNNRLSVYESVFMIINRSMEDAAAKLISGVATFTCVELCTYPEFVFYAVVTNLLSMSRPELKKKVIDGPEVLQIIKQIPHLTDLVTSLYECEYATFFRTVAAIEPQLLNDRYFSRHTRYLVRELRVLVYTQFLDAYKTVTLASMAEAFGVGVDFLDGELARFISCGRLNAKVDKVAMVVETNRPDYKSQKYQQIIKQGDILLNRIQQLARCV 369
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: ETP51339.1 (hypothetical protein F442_03505 [Phytophthora parasitica P10297])

HSP 1 Score: 380.2 bits (975), Expect = 8.300e-102
Identity = 207/417 (49.64%), Postives = 286/417 (68.59%), Query Frame = 0 
Query:    1 MATEDTTTPAT-ATKKPSADGKPAVEDDEDPKHVPDMALAQDLYLLELAQSKPEEV-PD-VAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMVD 415
            MA +D   PA  A KK ++ G  + E ++D   +P+M L+Q  +LL+   S    + P+  A  +T+VL SIK +   P Y  VC E   WPVD AL+ ++   N  EL+ ++E+L  A ++ GD+EVL+AL+A+ + Y+RIG+K  AL A      KP+ S  +KI   +  +R+GLFF D E  +  ++KA  L+++GGDWDRRNRLKVYE   L+ AR  KKAS L  + +ATFT  EL  Y   +FY V+T +L + R  LKKK+VD PE++AV+ ++P L   LN LYDCDY+ FF A+VE+ P L RD+Y + H R + RELRVL Y+QFLE+Y+SV +ASMA +FGV VEFLD EL+RFIA+GRL+AKIDKV GV+ET+RPD KNAQYQ+ +K+GDLLLNR+ KLAR+++
Sbjct:    1 MAADDAKKPAVPALKKQASVGNISEEIEDDLSTLPNMKLSQLHFLLQHQHSSASTLTPEAAAAAQTQVLESIKQNDMAPFYRLVCSE-FNWPVDAALEGDMANKNATELAALDERLADAEQNLGDIEVLEALLAKARMYSRIGDKEKALEAFKVAGEKPQ-SINQKILVALHVIRIGLFFSDLELVETYIKKATALIDEGGDWDRRNRLKVYEGCYLLMARDFKKASTLFQESVATFTATELMPYNTMVFYCVITCVLSMSRVDLKKKIVDSPEILAVINEIPCLTDFLNGLYDCDYKKFFTAMVEIQPYLLRDKYLSTHSRFLYRELRVLAYAQFLEAYRSVTIASMAAAFGVSVEFLDTELARFIAAGRLNAKIDKVAGVIETNRPDAKNAQYQDAIKKGDLLLNRIQKLARVIN 415
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: ETI53538.1 (hypothetical protein F443_03523 [Phytophthora parasitica P1569] >ETK93414.1 hypothetical protein L915_03405 [Phytophthora parasitica] >ETL99935.1 hypothetical protein L917_03284 [Phytophthora parasitica] >ETP23348.1 hypothetical protein F441_03517 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 377.9 bits (969), Expect = 4.100e-101
Identity = 206/417 (49.40%), Postives = 285/417 (68.35%), Query Frame = 0 
Query:    1 MATEDTTTPAT-ATKKPSADGKPAVEDDEDPKHVPDMALAQDLYLLELAQSKPEEV-PD-VAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMVD 415
            MA +D   PA  A KK ++ G  + E ++D   +P+M L+Q  +LL+   S    + P+  A  +T+VL  IK +   P Y  VC E   WPVD AL+ ++   N  EL+ ++E+L  A ++ GD+EVL+AL+A+ + Y+RIG+K  AL A      KP+ S  +KI   +  +R+GLFF D E  +  ++KA  L+++GGDWDRRNRLKVYE   L+ AR  KKAS L  + +ATFT  EL  Y   +FY V+T +L + R  LKKK+VD PE++AV+ ++P L   LN LYDCDY+ FF A+VE+ P L RD+Y + H R + RELRVL Y+QFLE+Y+SV +ASMA +FGV VEFLD EL+RFIA+GRL+AKIDKV GV+ET+RPD KNAQYQ+ +K+GDLLLNR+ KLAR+++
Sbjct:    1 MAADDAKKPAVPALKKQASVGNISEEIEDDLSTLPNMKLSQLHFLLQHQHSSASTLTPEAAAAAQTQVLEIIKQNDMAPFYRLVCSE-FNWPVDAALEGDMANKNATELAALDERLADAEQNLGDIEVLEALLAKARMYSRIGDKEKALEAFKVAGEKPQ-SINQKILVALHVIRIGLFFSDLELVETYIKKATALIDEGGDWDRRNRLKVYEGCYLLMARDFKKASTLFQESVATFTATELMPYNTMVFYCVITCVLSMSRVDLKKKIVDSPEILAVINEIPCLTDFLNGLYDCDYKKFFTAMVEIQPYLLRDKYLSTHSRFLYRELRVLAYAQFLEAYRSVTIASMAAAFGVSVEFLDTELARFIAAGRLNAKIDKVAGVIETNRPDAKNAQYQDAIKKGDLLLNRIQKLARVIN 415
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: XP_008900702.1 (hypothetical protein PPTG_08378 [Phytophthora parasitica INRA-310] >ETL46823.1 hypothetical protein L916_03358 [Phytophthora parasitica] >ETM53115.1 hypothetical protein L914_03383 [Phytophthora parasitica] >ETN13622.1 hypothetical protein PPTG_08378 [Phytophthora parasitica INRA-310] >ETO82222.1 hypothetical protein F444_03591 [Phytophthora parasitica P1976] >KUF76390.1 26S proteasome non-ATPase regulatory subunit 6 [Phytophthora nicotianae] >KUF92720.1 hypothetical protein AM588_10007249 [Phytophthora nicotianae])

HSP 1 Score: 377.1 bits (967), Expect = 7.100e-101
Identity = 205/417 (49.16%), Postives = 285/417 (68.35%), Query Frame = 0 
Query:    1 MATEDTTTPAT-ATKKPSADGKPAVEDDEDPKHVPDMALAQDLYLLELAQSKPEEV-PD-VAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMVD 415
            MA +D   PA  A KK ++ G  + E ++D   +P+M L+Q  +LL+   S    + P+  A  +T+VL  IK +   P Y  VC E   WPVD AL+ ++   N  EL+ ++E+L  A ++ GD+EVL+AL+A+ + Y+RIG+K  AL A      KP+ S  +KI   +  +R+GLFF D E  +  ++KA  L+++GGDWDRRNRLKVYE   L+ AR  KKAS L  + +ATFT  EL  Y   +FY V+T +L + R  LKKK+VD PE++AV+ ++P L   LN LYDCDY+ FF A+VE+ P + RD+Y + H R + RELRVL Y+QFLE+Y+SV +ASMA +FGV VEFLD EL+RFIA+GRL+AKIDKV GV+ET+RPD KNAQYQ+ +K+GDLLLNR+ KLAR+++
Sbjct:    1 MAADDAKKPAVPALKKQASVGNISEEIEDDLSTLPNMKLSQLHFLLQHQHSSASTLTPEAAAAAQTQVLEIIKQNDMAPFYRLVCSE-FNWPVDAALEGDMANKNATELAALDERLADAEQNLGDIEVLEALLAKARMYSRIGDKEKALEAFKVAGEKPQ-SINQKILVALHVIRIGLFFSDLELVETYIKKATALIDEGGDWDRRNRLKVYEGCYLLMARDFKKASTLFQESVATFTATELMPYNTMVFYCVITCVLSMSRVDLKKKIVDSPEILAVINEIPCLTDFLNGLYDCDYKKFFTAMVEIQPYILRDKYLSTHSRFLYRELRVLAYAQFLEAYRSVTIASMAAAFGVSVEFLDTELARFIAAGRLNAKIDKVAGVIETNRPDAKNAQYQDAIKKGDLLLNRIQKLARVIN 415
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: XP_009537239.1 (hypothetical protein PHYSODRAFT_253936 [Phytophthora sojae] >EGZ07673.1 hypothetical protein PHYSODRAFT_253936 [Phytophthora sojae])

HSP 1 Score: 374.8 bits (961), Expect = 3.500e-100
Identity = 203/422 (48.10%), Postives = 284/422 (67.30%), Query Frame = 0 
Query:    1 MATEDTTTPA------TATKKPSADGKPAVEDDEDPKHVPDMALAQDLYLLELAQSKPEEV--PDVAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMVD 415
            MA +D   PA         KK ++ G  + E ++D   +P+M L+Q  +LL    S    +  PD A  + +VL  I+     P Y  VC E   WPVD AL+A++ A NE EL+ ++E+L  A ++ GD+EVL+AL+A+ + Y+RIG++  AL A      KP+ S  +KI   +  +R+GLFF D E  +  ++KA  L+++GGDWDRRNRLKVYE   L+ AR  KKAS+L  + +ATFT  EL  Y   +FY V+T +L + R  LKKK+VD PE++AV+ ++P L   LN LYDC+Y+ FF A+V++ P + RD+Y + H R + RELRVL Y QFLE+Y+SV +ASMA +FGV VEFLD EL+RFIA+GRL+AKIDKV GV+ET+RPD KNAQYQ+ +K+GDLLLNR+ KLAR+++
Sbjct:    1 MAADDAKKPADPAAKVPTLKKQASVGNISEEIEDDLSTLPNMKLSQLHFLLRHQHSGASTLGEPDAAAAKQQVLEIIQQSDMAPFYRLVCAE-FQWPVDAALEAQMSAKNEQELAQLDERLADAEQNLGDIEVLEALLAKARMYSRIGDEEKALEAFKVAGEKPQ-SINQKILVALHIIRIGLFFSDLELVETYIKKATALIDEGGDWDRRNRLKVYEGCYLLMARDFKKASKLFQESVATFTATELMPYNTMVFYCVITCVLSMSRVDLKKKIVDSPEILAVINEIPCLTDFLNGLYDCNYKRFFTAMVDIQPYILRDKYLSTHSRFLYRELRVLAYGQFLEAYRSVTIASMATAFGVSVEFLDNELARFIAAGRLNAKIDKVAGVIETNRPDAKNAQYQDAIKKGDLLLNRIQKLARVIN 420
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: OQR86463.1 (26S proteasome non-ATPase regulatory subunit 6 [Achlya hypogyna])

HSP 1 Score: 368.6 bits (945), Expect = 2.500e-98
Identity = 193/390 (49.49%), Postives = 269/390 (68.97%), Query Frame = 0 
Query:   27 DEDPKHVPDMALAQDLYLLELAQSKPEEV--PDVAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMVD 415
            ++D   +P+M ++   YLL+ + S    V   ++A  + ++L  IK +   P Y  +C E   WPVD AL   +K +N+AEL  ++ QL  AT + GD+EVL+A +AR + Y++IG+K   L A    L KP  S  +KI   +  +R+GLFF D E  + +++KA  L+++GGDWDRRNRLKVYE   L+ AR  KKAS+L  + +ATFT  EL TY   IFYAV+T +L ++R  LKKK+VD  EV+AV+ D+P L   LN LYDC+Y+ FF A+V++ P + RD+Y A H R + RELR+L Y+QFL++Y+SV + SMA SFGVG+ FLD ELSRFIA+GRL+AKIDKV GV+ET+RPD KNAQY E +K+GD LLNR+ KLAR+++
Sbjct:   18 EQDISTLPNMEISHLHYLLQASASAHAAVTADEIAAAKVKLLEHIKTNNMSPYYEQLCAE-FQWPVDSALLENMKNANDAELKALDAQLEDATANLGDIEVLEAHLARARLYSKIGDKAKVLEAFKTALTKP-TSINQKIIIELHIIRIGLFFSDLELVEAHIKKATALIDEGGDWDRRNRLKVYEGCYLLMARDFKKASKLFQESVATFTSTELMTYPTMIFYAVITCVLSMDRVDLKKKIVDSSEVLAVILDIPFLSDFLNGLYDCNYKQFFTAMVQLHPHVHRDKYLAAHSRFIYRELRILAYTQFLQAYRSVTMQSMATSFGVGIAFLDAELSRFIAAGRLNAKIDKVAGVIETNRPDAKNAQYHETIKKGDALLNRIQKLARVIN 405
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: XP_002904101.1 (26S proteasome non-ATPase regulatory subunit 6 [Phytophthora infestans T30-4] >EEY54279.1 26S proteasome non-ATPase regulatory subunit 6 [Phytophthora infestans T30-4])

HSP 1 Score: 365.5 bits (937), Expect = 2.100e-97
Identity = 198/417 (47.48%), Postives = 283/417 (67.87%), Query Frame = 0 
Query:    1 MATEDT-TTPATATKKPSADGKPAVEDDEDPKHVPDMALAQDLYLLELAQSKPEEV-PD-VAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMVD 415
            MA +D   +   A KK ++ G  + E ++D   +P+M L+Q  +LL+   S    + P+  A  +T+VL  +K +   P Y  +   +  WPVD  L+AE+   N  EL+ ++E+L  A ++ GD+EVL+A++A+ + Y+RIG+K  AL A      KP+ S  +KI   +  +R+GLFF D E  +  ++KA  L+++GGDWDRRNRLKVYE   L+ AR  KKAS L  + +ATFT  EL  Y   +FY V+T +L + R  LKKK+VD PE++AV+ ++P L   LN LYDCDY+ FF A+V++ P + RD+Y + H R + RELRVL Y+QFLE+Y+SV +ASMA +FGV VEFLD EL+RFIA+GRL+AKIDKV GV+ET+RPD KNAQYQ+ +K+GDLLLNR+ KLAR+++
Sbjct:    1 MAADDAKKSTVPALKKQASVGNISEEIEDDLSTLPNMKLSQLHFLLQHKHSSASTLTPEAAAAAQTQVLELVKQNDMAPFY-HIVYNEFKWPVDSVLEAEMSNKNATELAALDERLADAEQNLGDIEVLEAMLAKARMYSRIGDKEKALEAFKVAGEKPQ-SINQKILVALHVIRIGLFFSDLELVETYIKKAAALIDEGGDWDRRNRLKVYEGCYLLMARDFKKASTLFQESVATFTATELMPYNTMVFYCVITCVLSMSRVDLKKKIVDSPEILAVINEIPCLTDFLNGLYDCDYKKFFTAMVDIQPYILRDKYLSTHSRFLYRELRVLAYAQFLEAYRSVTIASMAAAFGVSVEFLDTELARFIAAGRLNAKIDKVAGVIETNRPDAKNAQYQDAIKKGDLLLNRIQKLARVIN 415
[Close]
BLAST of NO04G01770 vs. NCBI_GenBank
Match: OQR90561.1 (26S proteasome non-ATPase regulatory subunit 6 [Thraustotheca clavata])

HSP 1 Score: 365.5 bits (937), Expect = 2.100e-97
Identity = 200/399 (50.13%), Postives = 270/399 (67.67%), Query Frame = 0 
Query:   20 GKPAVEDDE-DPKHVPDMALAQDLYLLELAQSKPEEVPDVAEVRT---RVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKASNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAADEILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDWDRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAVVTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHALVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFGVGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGDLLLNRLSKLARMVD 415
            G    ED E D   +P M ++   YLL  A S P    D   + T   ++L  I+     P Y  +C E   W +D  L A++K +NE EL  ++ QL  AT++ GD+EVL+A +AR + Y++IG+KT  L A    L KP  S  +KI   +  +R+GLFF D E  + +++KA  L+++GGDWDRRNRLKVYE   L+ AR  KKAS+L  + +ATFT  EL TY   IFYAV+T +L ++R +LKKK+VD  EV+AV+ D P L   LN LYDC+Y+ FF A+V++ P + RD+Y A H R + RELR+L YSQFL+SY+SV + SMA+SFG+GV FLD ELSRFIA+GRL+AKIDKV GV+ET+RPD KNAQYQE +K+GD LLNR+ KLAR+++
Sbjct:    9 GSHVSEDLELDISTLPTMEISHLHYLLH-ASSSPHAAMDATTIETTKSQLLQQIQEYNMAPYYQQLCNE-FQWTLDTELLAKMKKANEQELEALDAQLEDATKNLGDIEVLEAHLARARLYSKIGDKTNVLEAFKTALTKP-TSINQKIIIELHIIRIGLFFSDLELVETHIKKATTLIDEGGDWDRRNRLKVYEGCYLLMARDFKKASKLFQESVATFTSTELMTYPTMIFYAVITCVLSMDRVELKKKIVDSSEVLAVILDTPYLSDFLNGLYDCNYKQFFTAMVQLHPHIHRDKYLANHSRFIYRELRILAYSQFLQSYRSVTMQSMAQSFGIGVAFLDSELSRFIAAGRLNAKIDKVAGVIETNRPDAKNAQYQETIKKGDTLLNRIQKLARVIN 404
The following BLAST results are available for this feature:
BLAST of NO04G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28571.15.300e-18181.6426s proteasome regulatory subunit n7 [Nannochlorop... [more]
CBN73890.19.500e-10655.35conserved unknown protein [Ectocarpus siliculosus][more]
XP_009032786.15.800e-10354.80hypothetical protein AURANDRAFT_19506 [Aureococcus... [more]
ETP51339.18.300e-10249.64hypothetical protein F442_03505 [Phytophthora para... [more]
ETI53538.14.100e-10149.40hypothetical protein F443_03523 [Phytophthora para... [more]
XP_008900702.17.100e-10149.16hypothetical protein PPTG_08378 [Phytophthora para... [more]
XP_009537239.13.500e-10048.10hypothetical protein PHYSODRAFT_253936 [Phytophtho... [more]
OQR86463.12.500e-9849.4926S proteasome non-ATPase regulatory subunit 6 [Ac... [more]
XP_002904101.12.100e-9747.4826S proteasome non-ATPase regulatory subunit 6 [Ph... [more]
OQR90561.12.100e-9750.1326S proteasome non-ATPase regulatory subunit 6 [Th... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009634NSK009634Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01770.1NO04G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578554gene_1964Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g61gene2008Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01770.1NO04G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01770 ID=NO04G01770|Name=NO04G01770|organism=Nannochloropsis oceanica|type=gene|length=1740bp
ACAGACCACGCAGGTAAGCATGGCGACGGAAGACACGACGACACCGGCAA
CTGCTACCAAGAAGCCGAGTGCGGATGGGAAGCCGGCCGTGGAAGATGAT
GAGGACCCCAAGCACGTCCCCGACATGGCCTTGGCCCAAGACCTCTACTT
GTTGGAGCTGGCGCAAAGTAAACCCGAGGAGGTGCCAGACGTGGCAGAGG
TGAGGACCCGAGTCCTGGCGTCGATCAAAGCGGACAAGGCCGAGCCCTTG
TACACCAGTGTGTGTGTCGAAAAGCTGGGGTGGCCCGTGGACGTCGCGTT
GCAAGCAGAGCTCAAAGCATCAAACGAGGCGGAGCTGTCAGGTATCGAGG
AGCAGCTGCGCGTGGCAACGGAAAGCTCGGGGGACATGGAGGTGCTCGAT
GCGCTAATTGCCCGCGAGAAGTTCTACGCCCGGATTGGAAATAAGACGGC
GGCCTTGGCGGCGGCGGATGAGATTTTGGCCAAGCCGAAGATTAGTACGG
GGAAGAAGATTGACGCGGTGATGGACAAGGTCCGTTTGGGTCTATTCTTC
CGTGACCCTGAGGCGACGAAGGAGAATTTGGAGAAGGCTAAAAAGCTGGT
GGAGGACGGCGGGGATTGGGATCGCCGGAATCGGTTGAAAGTTTACGAGG
CTTTGGCCTTGATCACTGCGAGGTCCCTGAAGAAGGCATCGGAGCTGCTG
TTAGATTGCATTGCGACATTCACATGCGTGGAGCTGGCGACTTACCGCCA
ATTTATTTTCTACGCGGTGGTCACGAATCTATTGTACCTGGAACGAACGA
AGCTGAAGAAAAAGCTTGTGGACGGGCCTGAAGTTATTGCGGTATTGAGG
GACTTGCCGGCGTTGGGGCGTTTGCTCAATGCATTGTATGATTGTGATTA
TCGCGCGTTCTTTCATGCTCTTGTAGAGGTGACACCTGATTTAACACGGG
ACCGATACACGGCGCCGCATGTGAGGATTGTGGTCCGAGAGTTGCGGGTG
TTGGTTTATTCGCAGTTCCTAGAGAGTTACAAGAGTGTGAGGCTGGCGTC
CATGGCTGAGTCTTTTGGCGTGGGGGTTGAATTCCTCGACAAAGAGTTAT
CACGTTTCATCGCCTCTGGGAGGTTGAGTGCGAAAATCGATAAGGTAGGG
GGGGTGGTCGAGACGAGTCGGCCTGATACCAAAAATGCCCAGTACCAGGA
GGTCGTGAAGGAGGGCGACTTGTTGCTGAACCGGTTGTCGAAATTAGCGA
GGATGGTTGATTTTTAAGTGATGGGGTGGGATACTGGTGATTGGGAGGAT
AGAGAGAGGGCGACTTATTGCTGAACCGGTTGTCGAAATTAGCGAGGATG
GTTGATTTCTATTGGAAGGGTATGGGATGGAGGATAGGGAGGGCGTTGCT
GGTGGGGGAAAGAAAGGGGGTAATAATAAGATAGGTGCAAGAAGAGATTA
ACAAAAGAATCAAATCAAATGCCGGCCGAAGGAGGTGATTTCAATGCGTT
CCACGGTTCCTTTTTGGGCGCTTGACCAGCCAAAGGAGAATGCGCGGCCT
TTTCTCCCGTTTCATTCGACAATGGTATCGGAGAGCGCAATCGATTTTGA
AGTCGCGGCGATGAACGACACCTGTCGCTGGGAGACTCGCGTACAAGCAA
CACAACAAAGAAATGAGGAGTAAGGGGATGGGTTGGACAAGGCTAGACGC
AGATGTGTATGTACAAAAAGCAATGGGATCAAGCATCACC
back to top

protein sequence of NO04G01770.1

>NO04G01770.1-protein ID=NO04G01770.1-protein|Name=NO04G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MATEDTTTPATATKKPSADGKPAVEDDEDPKHVPDMALAQDLYLLELAQS
KPEEVPDVAEVRTRVLASIKADKAEPLYTSVCVEKLGWPVDVALQAELKA
SNEAELSGIEEQLRVATESSGDMEVLDALIAREKFYARIGNKTAALAAAD
EILAKPKISTGKKIDAVMDKVRLGLFFRDPEATKENLEKAKKLVEDGGDW
DRRNRLKVYEALALITARSLKKASELLLDCIATFTCVELATYRQFIFYAV
VTNLLYLERTKLKKKLVDGPEVIAVLRDLPALGRLLNALYDCDYRAFFHA
LVEVTPDLTRDRYTAPHVRIVVRELRVLVYSQFLESYKSVRLASMAESFG
VGVEFLDKELSRFIASGRLSAKIDKVGGVVETSRPDTKNAQYQEVVKEGD
LLLNRLSKLARMVDF*
back to top
Synonyms
Publications