NO04G01730, NO04G01730 (gene) Nannochloropsis oceanica

Overview
NameNO04G01730
Unique NameNO04G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length594
Alignment locationchr4:513125..513718 +

Link to JBrowse

Properties
Property NameValue
DescriptionRna recognition motif-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:513125..513718 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
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BLAST of NO04G01730 vs. NCBI_GenBank
Match: EWM28578.1 (rna recognition motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 130.2 bits (326), Expect = 7.200e-27
Identity = 80/155 (51.61%), Postives = 95/155 (61.29%), Query Frame = 0 
Query:    1 MKALEGKIVVKGEEEKEGDIVLRVEWARGEGEEDVR--GEEKKAGPGGGVAAATAPAREGTKDSINNKVTLYVSHLPLDTTKEELMEHFETYGKVTRVWISFVDMPARASGREGGRKGGCDYAFVSFESEKVVHAAIEKEQANPWVVRGHTIEAK 154
            MK LEGK+V+K E       VL+VEWARGE   + R  G +K AGPG G         EG + ++N+K T++VS LP D  KEEL E F  YGKVTRVWISF ++P R     GG K   DYAFVSFESE +   AIE E   PW VRG T+E K
Sbjct:  336 MKGLEGKVVLKEEGR-----VLKVEWARGEEAVEKRKAGGKKGAGPGQG---------EGKEAAVNSKTTIHVSRLPSDVRKEELRERFGQYGKVTRVWISFEEIPVR-----GGGKRANDYAFVSFESEAMAARAIEGEAGAPWEVRGKTVEVK 471
The following BLAST results are available for this feature:
BLAST of NO04G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28578.17.200e-2751.61rna recognition motif-containing protein [Nannochl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01730.1NO04G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|289915gene_1961Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01730.1NO04G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01730 ID=NO04G01730|Name=NO04G01730|organism=Nannochloropsis oceanica|type=gene|length=594bp
ATGAAGGCCTTGGAGGGGAAGATTGTGGTGAAGGGGGAGGAAGAGAAGGA
GGGCGACATAGTGTTGAGGGTCGAATGGGCAAGGGGGGAGGGGGAGGAGG
ACGTGCGGGGAGAGGAGAAGAAGGCAGGTCCTGGTGGTGGTGTTGCTGCT
GCGACTGCGCCTGCGAGAGAGGGAACGAAGGACAGTATCAACAATAAGGT
GACGCTGTATGTGTCACATCTACCGCTGGACACGACGAAAGAGGAGCTGA
TGGAACACTTTGAAACGTACGGGAAAGTTACCCGGGTCTGGATCTCGTTC
GTGGACATGCCGGCGAGGGCGAGCGGGAGGGAGGGAGGAAGGAAGGGGGG
ATGTGACTATGCGTTCGTCTCGTTTGAGAGCGAGAAAGTGGTGCATGCCG
CCATAGAAAAGGAGCAAGCGAATCCGTGGGTAGTGAGAGGACATACCATA
GAAGCCAAGCAAGCAAGGGCAAGGCACGAGGGCCAGCAGCAGCAGCAGCA
GCAGGGGAGGAAAGGGGGGAGAGGGAGAGGGGGGAGAGAGACAGAGGGAG
AGACAGGGGGAGGAGGAGGGGGGGGATGGAGGAAGGGGAGATGA
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protein sequence of NO04G01730.1

>NO04G01730.1-protein ID=NO04G01730.1-protein|Name=NO04G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MKALEGKIVVKGEEEKEGDIVLRVEWARGEGEEDVRGEEKKAGPGGGVAA
ATAPAREGTKDSINNKVTLYVSHLPLDTTKEELMEHFETYGKVTRVWISF
VDMPARASGREGGRKGGCDYAFVSFESEKVVHAAIEKEQANPWVVRGHTI
EAKQARARHEGQQQQQQQGRKGGRGRGGRETEGETGGGGGGGWRKGR*
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Synonyms
Publications