NO04G01690, NO04G01690 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_019906887.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X2 [Esox lucius]) HSP 1 Score: 77.4 bits (189), Expect = 5.000e-11 Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 0 Query: 48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140 I+ LA FL L+ Y PTIP+ VT Y+L +AG +DP+I +LVSLAA+K +S+I +D + +MK + TL MEDL +L +YGI K Sbjct: 88 INSTPLADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLVSLAAQKFISDIANDALQHCKMKGTASGSSRNKTKDKKYTLTMEDLSPALSEYGINVKK 190
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_020388607.1 (transcription initiation factor TFIID subunit 10, partial [Rhincodon typus]) HSP 1 Score: 77.4 bits (189), Expect = 5.000e-11 Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 0 Query: 48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140 I LA FL L+ Y PTIP+ VT Y+L +AG +DP+I +L+SLAA+K +S+I +D + +MK + TL MEDL+ +L +YGI K Sbjct: 56 ISTTPLADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRNKSKDKKYTLTMEDLIPALSEYGINVKK 158
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_020474233.1 (transcription initiation factor TFIID subunit 10 [Monopterus albus]) HSP 1 Score: 77.4 bits (189), Expect = 5.000e-11 Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 53 LAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140 LA FL L++Y PTIP+ VT Y+L +AG +DP+I +L+SLA++K +S+I +D Y +MK + TL MEDL +L +YGI K Sbjct: 84 LADFLMQLEEYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLASQKFISDIANDALQYCKMKGTASGSSRSKTKDKKYTLTMEDLTPALSEYGINVKK 181
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_020785429.1 (transcription initiation factor TFIID subunit 10 [Boleophthalmus pectinirostris]) HSP 1 Score: 77.4 bits (189), Expect = 5.000e-11 Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 0 Query: 48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140 I LA FL L+ Y PTIP+ VT Y+L +AG +DP+I +L+SLA++K +S+I +D Y +MK + TL MEDL +L +YG+ K Sbjct: 75 ISTTPLADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLASQKFISDIANDALQYCKMKGTASGSSRSKTKDKKYTLTMEDLQPALSEYGVNVKK 177
BLAST of NO04G01690 vs. NCBI_GenBank
Match: ACO14518.1 (Transcription initiation factor TFIID subunit 10 [Esox lucius]) HSP 1 Score: 77.0 bits (188), Expect = 6.500e-11 Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 0 Query: 48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRM------------KEHDGETLKMEDLMESLGKYGIQKLK 140 I+ LA FL L+ Y PTIP+ VT Y+L +AG +DP+I +LVSLAA+K +S+I +D + +M K+ TL MEDL +L +YGI K Sbjct: 77 INSTPLADFLMQLEDYTPTIPDAVTRYYLNRAGFEASDPRIIRLVSLAAQKFISDIANDALQHCKMKGTASGSSRNKTKQDKKYTLTMEDLSPALSEYGINVKK 180
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_003444828.1 (PREDICTED: transcription initiation factor TFIID subunit 10 [Oreochromis niloticus]) HSP 1 Score: 77.0 bits (188), Expect = 6.500e-11 Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 53 LAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140 LA FL L++Y PTIP+ VT Y+L +AG +DP+I +L+SLA++K +S+I +D Y +MK + TL MEDL +L +YG+ K Sbjct: 84 LADFLMQLEEYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLASQKFISDIANDALQYCKMKGTASGSSRSKTKDKKYTLTMEDLTPALAEYGVNVKK 181
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_003963314.1 (PREDICTED: transcription initiation factor TFIID subunit 10 [Takifugu rubripes]) HSP 1 Score: 77.0 bits (188), Expect = 6.500e-11 Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 0 Query: 35 GANGGGHVERSHGIDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140 G G V+ + P LA FL L++Y PTIP+ VT Y+L +AG +DP+I +L+SLA++K +S+I +D Y +MK + TL MEDL +L +YG+ K Sbjct: 61 GGIANGDVKSAVSTTP--LADFLMQLEEYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLASQKFISDIANDALQYCKMKGTASGSSRSKTKDKKYTLTMEDLAPALSEYGVNVKK 174
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_004554138.1 (transcription initiation factor TFIID subunit 10 [Maylandia zebra] >XP_005733071.1 PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Pundamilia nyererei] >XP_005941235.1 PREDICTED: transcription initiation factor TFIID subunit 10-like isoform X1 [Haplochromis burtoni]) HSP 1 Score: 77.0 bits (188), Expect = 6.500e-11 Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 53 LAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140 LA FL L++Y PTIP+ VT Y+L +AG +DP+I +L+SLA++K +S+I +D Y +MK + TL MEDL +L +YG+ K Sbjct: 84 LADFLMQLEEYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLASQKFISDIANDALQYCKMKGTASGSSRSKTKDKKYTLTMEDLTPALAEYGVNVKK 181
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_005733072.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X2 [Pundamilia nyererei] >XP_005941236.1 PREDICTED: transcription initiation factor TFIID subunit 10-like isoform X2 [Haplochromis burtoni]) HSP 1 Score: 77.0 bits (188), Expect = 6.500e-11 Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 53 LAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140 LA FL L++Y PTIP+ VT Y+L +AG +DP+I +L+SLA++K +S+I +D Y +MK + TL MEDL +L +YG+ K Sbjct: 82 LADFLMQLEEYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLASQKFISDIANDALQYCKMKGTASGSSRSKTKDKKYTLTMEDLTPALAEYGVNVKK 179
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_014001667.1 (PREDICTED: transcription initiation factor TFIID subunit 10-like isoform X3 [Salmo salar] >XP_014001668.1 PREDICTED: transcription initiation factor TFIID subunit 10-like isoform X3 [Salmo salar] >XP_014001670.1 PREDICTED: transcription initiation factor TFIID subunit 10-like isoform X3 [Salmo salar] >ACI66362.1 Transcription initiation factor TFIID subunit 10 [Salmo salar] >ACI67740.1 Transcription initiation factor TFIID subunit 10 [Salmo salar] >ADM16132.1 Transcription initiation factor TFIID subunit 10 [Salmo salar]) HSP 1 Score: 77.0 bits (188), Expect = 6.500e-11 Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 0 Query: 48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRM------------KEHDGETLKMEDLMESLGKYGIQKLK 140 I LA FL L+ Y PTIP+ VT Y+L +AG +DP+I +LVSLAA+K +S+I +D + +M K+ TL MEDL +L +YGI K Sbjct: 79 ISTTPLADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLVSLAAQKFISDIANDALQHCKMKGTASGSSRNKTKQDKKYTLTMEDLSPALSEYGINVKK 182 The following BLAST results are available for this feature:
BLAST of NO04G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01690 ID=NO04G01690|Name=NO04G01690|organism=Nannochloropsis oceanica|type=gene|length=1443bpback to top protein sequence of NO04G01690.1 >NO04G01690.1-protein ID=NO04G01690.1-protein|Name=NO04G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bpback to top protein sequence of NO04G01690.2 >NO04G01690.2-protein ID=NO04G01690.2-protein|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=polypeptide|length=172bpback to top Synonyms
Publications
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