NO04G01590, NO04G01590 (gene) Nannochloropsis oceanica

Overview
NameNO04G01590
Unique NameNO04G01590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1734
Alignment locationchr4:481024..482757 +

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Properties
Property NameValue
DescriptionGrpE nucleotide exchange factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:481024..482757 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0050790regulation of catalytic activity
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0042803protein homodimerization activity
GO:0051087chaperone binding
GO:0000774adenyl-nucleotide exchange factor activity
GO:0051087chaperone binding
GO:0042803protein homodimerization activity
GO:0000774adenyl-nucleotide exchange factor activity
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
IPR009012GrpE_head
IPR000740GrpE
Homology
BLAST of NO04G01590 vs. NCBI_GenBank
Match: PIN15859.1 (Molecular chaperone of the GrpE family [Handroanthus impetiginosus])

HSP 1 Score: 65.1 bits (157), Expect = 5.700e-7
Identity = 49/160 (30.63%), Postives = 83/160 (51.88%), Query Frame = 0
Query:  212 LAKKRNELTEAQDRLK---TVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKE--DAVVVEVAVKGYRIGDTVVRRARVKVSA 367
            L K++NELT+    L    + GKE Y+RL A+ + Y++R       VR +A  E +E LLP++D  E  + +   +  E   K+   Y+ + + FV     L + A+P A G  FD    E       +E  + ++++   +G+ +GD ++R A VKVS+
Sbjct:  132 LEKEKNELTQKVSTLSEEISSGKEKYVRLQADFDNYRKRSEKERLTVRSDAQGEVIESLLPMVDSFERAK-QQIKLETEEEKKIDASYQGIYKQFVEIMRSLRVAAVP-AVGKPFDPSIHEAIAREESQEFKEGIIIQEFRRGFHLGDRLLRPAMVKVSS 289          
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_107138224.1 (nucleotide exchange factor GrpE [Deinococcus sp. OD32] >PTA67684.1 nucleotide exchange factor GrpE [Deinococcus sp. OD32])

HSP 1 Score: 65.1 bits (157), Expect = 5.700e-7
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0
Query:  236 RLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEAS--LKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVS 366
            RLAA+ E+Y+RR  D +   + +   +A E L+PV D ++        VT  A+   K++ G + +Q   +G    LG++A     G+AFD +  E  ++V G ED V+V+V   G+R+GD +VR ARV VS
Sbjct:   84 RLAADFESYRRRTQDDVQAAQGQGVSKAAEALMPVYDDLDR------AVTMGAADPAKLIPGMQAVQGKVLGVFAGLGLEA-TGKEGEAFDPQWHEALQVVPGDEDDVIVQVYQLGFRMGDRLVRPARVVVS 208          
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_024284616.1 (nucleotide exchange factor GrpE [Algoriphagus marincola] >KPQ16304.1 molecular chaperone GrpE [Algoriphagus marincola HL-49])

HSP 1 Score: 64.7 bits (156), Expect = 7.500e-7
Identity = 51/159 (32.08%), Postives = 82/159 (51.57%), Query Frame = 0
Query:  212 LAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASL-KVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETME-ISEMVVGKED--AVVVEVAVKGYRIGDTVVRRARVKVSA 367
            LAK + EL E +D+        Y+RL ++ E +++R A     + + A++E +  L+PV+D   + E  +    NE+   +V  G   + Q FV   E  G+K +    G  FD ET E I+++    E+    V++V  KGY +GD VVR A+V   A
Sbjct:   45 LAKMQGELAEMKDK--------YLRLYSDFENFRKRNAKERLDLIKTASEEVLRDLIPVVD---DFERAFKASENESDAGRVREGNHLIFQKFVKVLESKGLKVMEDQIGHPFDAETQEAITQIPAPSEEMKGKVIDVVEKGYTLGDKVVRYAKVVTGA 192          
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_011531197.1 (nucleotide exchange factor GrpE [Deinococcus geothermalis] >ABF46371.1 GrpE protein [Deinococcus geothermalis DSM 11300])

HSP 1 Score: 64.3 bits (155), Expect = 9.800e-7
Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 0
Query:  218 ELTEAQDRLKTVG---------KEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVS 366
            ++ E   RL+ VG         K    RLAA+ E+Y+RR  + +     +   +A E+L+PV D +E    +   +++    K++ G   +Q   +    +LG++A     G+ FD    E  ++V G+ED V+V+V   G+R+GD +VR ARV VS
Sbjct:   64 QVQEMMARLERVGELEQENADLKNKLGRLAADFESYRRRTQEDVAAAEGQGVAKAAERLMPVYDDLE----RALSMSSSEPAKLIPGVEAVQSTVLRIFGQLGLEA-TGKPGEPFDPRWHEAVQVVSGEEDDVIVQVYQLGFRMGDRLVRPARVVVS 215          
BLAST of NO04G01590 vs. NCBI_GenBank
Match: XP_018731972.1 (PREDICTED: uncharacterized protein LOC104450968 [Eucalyptus grandis] >KCW71297.1 hypothetical protein EUGRSUZ_F04384 [Eucalyptus grandis])

HSP 1 Score: 64.3 bits (155), Expect = 9.800e-7
Identity = 49/160 (30.63%), Postives = 83/160 (51.88%), Query Frame = 0
Query:  216 RNELTEAQDRLK---TVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDA------VVVEVAVKGYRIGDTVVRRARVKVSA 367
            R +L E    L    T GKE Y+RL A+ + Y++R       +   A +E +E LLP++D  E  + +    T+E   K+   Y+ + + FV     L + A+ A+ G  FD     +    +G+E++      +V++   +G+R+GD V+R A+VKVSA
Sbjct:  136 RKQLVEQVSTLSEEMTSGKENYIRLQADFDNYRKRSEKERLTISSNAQRELIESLLPMVDNFERAKQQIKPETDEEK-KIDASYQGIYKQFVEVMRSLHVSAI-ASLGKPFD----PLQHEAIGREESQEFREGIVIQEIRRGFRLGDRVLRPAKVKVSA 289          
The following BLAST results are available for this feature:
BLAST of NO04G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
PIN15859.15.700e-730.63Molecular chaperone of the GrpE family [Handroanth... [more]
WP_107138224.15.700e-736.36nucleotide exchange factor GrpE [Deinococcus sp. O... [more]
WP_024284616.17.500e-732.08nucleotide exchange factor GrpE [Algoriphagus mari... [more]
WP_011531197.19.800e-731.21nucleotide exchange factor GrpE [Deinococcus geoth... [more]
XP_018731972.19.800e-730.63PREDICTED: uncharacterized protein LOC104450968 [E... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009653NSK009653Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01590.1NO04G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578499gene_1945Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g43gene2022Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01590.1NO04G01590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01590 ID=NO04G01590|Name=NO04G01590|organism=Nannochloropsis oceanica|type=gene|length=1734bp
ACAGGCTTCAAGCAAGCAGCCACTTCATCATCGTCATCATGCATCGCACC
CCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTGCCGTGGTGGCCTT
GTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCCCGTCGCCTTCGA
CTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGACAGGGTCGTGCAG
CACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAGCACAGTCAGAAT
GATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCT
CGTGCTTGCGCAATTCCCGACGCACTTGCAGCGGTGCCGGGGCAGAATGT
GGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAGGCC
CCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAGCAG
GGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAAGCG
AAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATCAGC
AGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGGCCA
AGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCAGAA
TTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGACCGA
GGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTTTGG
CCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACCTAT
GTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGTGTT
GGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATGAGG
CATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTCGTG
GGTAAGGCGGAACGGTTGGGGATAAAGGCATTGCCGGCTGgtgagtgagg
aagggagggaaggaggaatggatggcgggatatttgtaaatggcgggagg
ggacagagccagacgtgcggtgatgtggatgatgaataggataatgatgc
atgtattgtctcagactatggtccatgccgaaactatcaccttggagaac
tgacacacacacacacctaccctccctccctccctcccttcctcgctcga
ccttcgaatgtacctcttctctcaccctctctctcctttgtacacatgaa
aaacaacacagCGGCAGGTGATGCGTTTGACGGAGAGACGATGGAGATAA
GTGAGATGGTGGTTGGGAAAGAGGACGCGGTGGTGGTGGAGGTGGCGGTG
AAGGGGTATAGAATCGGCGATACGGTGGTGAGGCGGGCGAGGGTGAAGGT
CAGTGCCACTGAGGAGACGATGAAGAAGGCTCAAGAGGAGGAGAAAGAGG
AAGAGGAGAAGGGGGAGGAGAAGGAGGCGGAGGCGGGGAGTTTGGAGGAG
GAGGGGAAGCAGTAGAGGTGATGAGATGTAGAGGAAAGGTGTGGTTTCTA
TGTTTTTGTGTGGGTGGACGGGAGGGATGGAAGGCGAGAGGAAGGGAAGG
AGCGGCTCGAGAGTGGATCGAGATTCTTCCCTTTTCTGCCTACCCACACC
AACACTCACATGCGCGTGCAATCAAGACACACACACGGACACACATTAAA
AGATTAAGGAAATTTTTCATAAAAGAAATGACTC
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protein sequence of NO04G01590.1

>NO04G01590.1-protein ID=NO04G01590.1-protein|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MHRTPQAATAMLMCLCAVVALWSCPAMAWAYLVPSPSTTGSRTTSSSALD
RVVQHQRVVSTGGLPTSTVRMMASSSSSSSSSSSSSFSCLRNSRRTCSGA
GAECGESIHVCNPWCDCAKRPHALSRQSRRTRLWAAAGEGDESTGAEDGE
EEEAKKGKKGKDEEEEEAVSAEETQEEEEVVEEEEEAKEHLSPEEQEKAA
LKAELKDLEAALAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRAD
GLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQ
QVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGY
RIGDTVVRRARVKVSATEETMKKAQEEEKEEEEKGEEKEAEAGSLEEEGK
Q*
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Synonyms
Publications