NO04G01590.1, NO04G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01590.1
Unique NameNO04G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1463
Alignment locationchr4:481024..482757 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:481024..482757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01590.1 vs.
Match: EWM28579.1 (GrpE nucleotide exchange factor [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 1.500e-87
Identity = 229/392 (58.42%), Postives = 273/392 (69.64%), Query Frame = 0 
Query:    1 MHRTPQAATAMLMCLCAVVALWSCPAMAWAYLVPSPSTTGSRTTSSSALDRVVQHQRVVSTGG---LPTSTVRMMASSSSSSSSSSSSSFSCLRNSRRTCSGAGAECGESIHVCNPWCDCAKRPHALSRQSRRTRLWAAAGEGDESTGAEDGEEEEAKKGKKGKDEEEEEAVSAEETQEEEEVVEEEEEAKEHLSPEEQEKAALKAELKDLEAALAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVSATEETMKKAQEEEKEEEEKGEEKE 390
            M R P+AATA+  CL   VALWS P MAW YL P  ST GS   S  A+ R      VVS      + +S+ RM A++SS   ++           R T +    +C    + C   C+CA R  A+ R SRRTRLWA          A+D EEE +++GKK  DE E+  V+AEE +  E   + EEE  E LSPE+Q KAAL+AELK+LE  LAKKRNELTEAQDRLKTVGKEG+MRLAAEVETYKRRRADGLTYVREEAA+E M+QLLPV DLMEELE +YA V++EASLKVLNGY+NL QVFVGKAERLG+K L  AAGDA+D E+ME+ E+VVG+ D VVVEV  KGY+IG+ V RRARVKVSATE T++KA+EEEKEEE   E KE
Sbjct:    1 MRRIPKAATAVSCCL---VALWSYPTMAWTYLAPR-STIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTV----------RSTINQKSEQCK---YACTSLCNCATRKRAVLRPSRRTRLWAT---------AQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKE 366
The following BLAST results are available for this feature:
BLAST of NO04G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28579.11.500e-8758.42GrpE nucleotide exchange factor [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01590NO04G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01590.1NO04G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01590.1.cds1NO04G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01590.1.cds2NO04G01590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01590.1 ID=NO04G01590.1|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp
ACAGGCTTCAAGCAAGCAGCCACTTCATCATCGTCATCATGCATCGCACC
CCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTGCCGTGGTGGCCTT
GTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCCCGTCGCCTTCGA
CTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGACAGGGTCGTGCAG
CACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAGCACAGTCAGAAT
GATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCT
CGTGCTTGCGCAATTCCCGACGCACTTGCAGCGGTGCCGGGGCAGAATGT
GGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAGGCC
CCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAGCAG
GGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAAGCG
AAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATCAGC
AGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGGCCA
AGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCAGAA
TTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGACCGA
GGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTTTGG
CCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACCTAT
GTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGTGTT
GGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATGAGG
CATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTCGTG
GGTAAGGCGGAACGGTTGGGGATAAAGGCATTGCCGGCTGCGGCAGGTGA
TGCGTTTGACGGAGAGACGATGGAGATAAGTGAGATGGTGGTTGGGAAAG
AGGACGCGGTGGTGGTGGAGGTGGCGGTGAAGGGGTATAGAATCGGCGAT
ACGGTGGTGAGGCGGGCGAGGGTGAAGGTCAGTGCCACTGAGGAGACGAT
GAAGAAGGCTCAAGAGGAGGAGAAAGAGGAAGAGGAGAAGGGGGAGGAGA
AGGAGGCGGAGGCGGGGAGTTTGGAGGAGGAGGGGAAGCAGTAGAGGTGA
TGAGATGTAGAGGAAAGGTGTGGTTTCTATGTTTTTGTGTGGGTGGACGG
GAGGGATGGAAGGCGAGAGGAAGGGAAGGAGCGGCTCGAGAGTGGATCGA
GATTCTTCCCTTTTCTGCCTACCCACACCAACACTCACATGCGCGTGCAA
TCAAGACACACACACGGACACACATTAAAAGATTAAGGAAATTTTTCATA
AAAGAAATGACTC
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protein sequence of NO04G01590.1

>NO04G01590.1-protein ID=NO04G01590.1-protein|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MHRTPQAATAMLMCLCAVVALWSCPAMAWAYLVPSPSTTGSRTTSSSALD
RVVQHQRVVSTGGLPTSTVRMMASSSSSSSSSSSSSFSCLRNSRRTCSGA
GAECGESIHVCNPWCDCAKRPHALSRQSRRTRLWAAAGEGDESTGAEDGE
EEEAKKGKKGKDEEEEEAVSAEETQEEEEVVEEEEEAKEHLSPEEQEKAA
LKAELKDLEAALAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRAD
GLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQ
QVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGY
RIGDTVVRRARVKVSATEETMKKAQEEEKEEEEKGEEKEAEAGSLEEEGK
Q*
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mRNA from alignment at chr4:481024..482757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01590.1 ID=NO04G01590.1|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr4:481024..482757+ (Nannochloropsis oceanica)
ACAGGCTTCAAGCAAGCAGCCACTTCATCATCGTCATCATGCATCGCACC
CCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTGCCGTGGTGGCCTT
GTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCCCGTCGCCTTCGA
CTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGACAGGGTCGTGCAG
CACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAGCACAGTCAGAAT
GATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCT
CGTGCTTGCGCAATTCCCGACGCACTTGCAGCGGTGCCGGGGCAGAATGT
GGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAGGCC
CCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAGCAG
GGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAAGCG
AAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATCAGC
AGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGGCCA
AGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCAGAA
TTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGACCGA
GGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTTTGG
CCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACCTAT
GTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGTGTT
GGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATGAGG
CATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTCGTG
GGTAAGGCGGAACGGTTGGGGATAAAGGCATTGCCGGCTGGTGAGTGAGG
AAGGGAGGGAAGGAGGAATGGATGGCGGGATATTTGTAAATGGCGGGAGG
GGACAGAGCCAGACGTGCGGTGATGTGGATGATGAATAGGATAATGATGC
ATGTATTGTCTCAGACTATGGTCCATGCCGAAACTATCACCTTGGAGAAC
TGACACACACACACACCTACCCTCCCTCCCTCCCTCCCTTCCTCGCTCGA
CCTTCGAATGTACCTCTTCTCTCACCCTCTCTCTCCTTTGTACACATGAA
AAACAACACAGCGGCAGGTGATGCGTTTGACGGAGAGACGATGGAGATAA
GTGAGATGGTGGTTGGGAAAGAGGACGCGGTGGTGGTGGAGGTGGCGGTG
AAGGGGTATAGAATCGGCGATACGGTGGTGAGGCGGGCGAGGGTGAAGGT
CAGTGCCACTGAGGAGACGATGAAGAAGGCTCAAGAGGAGGAGAAAGAGG
AAGAGGAGAAGGGGGAGGAGAAGGAGGCGGAGGCGGGGAGTTTGGAGGAG
GAGGGGAAGCAGTAGAGGTGATGAGATGTAGAGGAAAGGTGTGGTTTCTA
TGTTTTTGTGTGGGTGGACGGGAGGGATGGAAGGCGAGAGGAAGGGAAGG
AGCGGCTCGAGAGTGGATCGAGATTCTTCCCTTTTCTGCCTACCCACACC
AACACTCACATGCGCGTGCAATCAAGACACACACACGGACACACATTAAA
AGATTAAGGAAATTTTTCATAAAAGAAATGACTC
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Coding sequence (CDS) from alignment at chr4:481024..482757+

>NO04G01590.1 ID=NO04G01590.1|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr4:481024..482757+ (Nannochloropsis oceanica)
ATGCATCGCACCCCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTGC
CGTGGTGGCCTTGTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCC
CGTCGCCTTCGACTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGAC
AGGGTCGTGCAGCACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAG
CACAGTCAGAATGATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTTCTCGTGCTTGCGCAATTCCCGACGCACTTGCAGCGGTGCC
GGGGCAGAATGTGGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTG
TGCTAAGAGGCCCCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGT
GGGCAGCAGCAGGGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAG
GAAGAGGAAGCGAAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGA
GGCAGTATCAGCAGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGG
AGGAGGAGGCCAAGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCG
CTCAAGGCAGAATTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAA
TGAGCTGACCGAGGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCT
ATATGCGTTTGGCCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGAT
GGCTTGACCTATGTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCT
CTTGCCTGTGTTGGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGG
TGACAAATGAGGCATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAG
CAGGTGTTCGTGGGTAAGGCGGAACGGTTGGGGATAAAGGCATTGCCGGC
TGCGGCAGGTGATGCGTTTGACGGAGAGACGATGGAGATAAGTGAGATGG
TGGTTGGGAAAGAGGACGCGGTGGTGGTGGAGGTGGCGGTGAAGGGGTAT
AGAATCGGCGATACGGTGGTGAGGCGGGCGAGGGTGAAGGTCAGTGCCAC
TGAGGAGACGATGAAGAAGGCTCAAGAGGAGGAGAAAGAGGAAGAGGAGA
AGGGGGAGGAGAAGGAGGCGGAGGCGGGGAGTTTGGAGGAGGAGGGGAAG
CAGTAG
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Synonyms
Publications