NO04G01410, NO04G01410 (gene) Nannochloropsis oceanica

Overview
NameNO04G01410
Unique NameNO04G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2397
Alignment locationchr4:441243..443639 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:441243..443639 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G01410 vs. NCBI_GenBank
Match: EWM28584.1 (hypothetical protein Naga_100009g23 [Nannochloropsis gaditana])

HSP 1 Score: 701.0 bits (1808), Expect = 3.200e-198
Identity = 379/570 (66.49%), Postives = 434/570 (76.14%), Query Frame = 0 
Query:   49 LASSPIFLAPLAFLFVLVCSLISPTKCAELVPDRWHEFEVPVVPEDKDYTQIKLNRIRDGHVAVNKHTDPSVTAELLVGDMLEAKGYTPEEIYAMQGVVSVLVKAGVLTVHADRLETADLSVLTKTTSTTGTPKRRKLQNMDGCCPCHVEAGHHPHPTIPPXXXXXXXXXXXXXXXXXXXXXXXXXA-----DADARACERTLAGCAMKEVQLAADRRSMYKTMKAYGLALRRTAAARSYYLYVKEEVHSFNEFEALSKAEQEATREELAAHLLLTCKAYGLNGEELQRYGKKLGFEVPDLTKTSDAELTRLATEMASTHMMESVAKAMGKDLGFEALKVLKDSMGDAALRRIGVEPSPALRVAFGEFASEASRFITLSRQAMEAQNMLDPEIDEAYTNATAMADRLAVMMEKVNVTDLLVTATGLMISAEPYLTSAIDNPVDEQVRHKTIQPWEIILKLSQVEKAAQQQRKSFAFGLKEGNALDGLVMLHNGNGARVESPLMQQLDFDMIEDITADHMLDASELRYLVQRVGALNEIYTVDDFADLMAEVEENYREVKGLPPVYGQEES 614
            L++SP  L  L FL  +     S    AE+VPD+W EFEVPVVPEDKDYTQIKLNR+RD +VAVN+ TDP++TAELLVGDMLE+KGYTPEEIYA+QGVV+VLV AGVLTVHA++LE ADLS LT  TSTTGTPKRR LQ+  GCCPC  +   +P   +                           A       D RACERTL GC  K VQLAADRRSMYK+MKA G ALRRTAAARSYYL+VK+EVHSF +FEALSK+EQEATR+ELA  LLLTCK YGL G ELQ Y + LG EVPDLTKTSDAEL  L  EMA+ H++E+VAK+MGKDLG E L   +D+ GDAALRRIGVEPSP +  AFG+FA+EASRFITLSRQAMEAQ +L+P   EAY NATA+ADRLA   E VNVTD+LVTATGLM+ AEPYLT++IDNPVD+  R K  +PW+IILKLSQ EKAAQQQRKSF   LKE N LDG+++LH  +G  VESPLMQQLDF  I +IT DHMLDASELR+LVQRVGALNEIY VDDFA+LMAEVE+NYR V GLPPV  +  S
Sbjct:    3 LSASPALLVGLLFLLAVTWK-GSAAGAAEVVPDQWREFEVPVVPEDKDYTQIKLNRLRDEYVAVNRQTDPAITAELLVGDMLESKGYTPEEIYAVQGVVAVLVNAGVLTVHAEKLEAADLSELTTATSTTGTPKRR-LQSNVGCCPCSPDRHTNPPNLVHTKDEEIKHVAFNLTDDGASPPAHPMNAAPTPDRTDPRACERTLLGCEKKSVQLAADRRSMYKSMKAMGQALRRTAAARSYYLFVKDEVHSFEDFEALSKSEQEATRQELATQLLLTCKEYGLQGVELQEYARALGMEVPDLTKTSDAELENLGREMAAQHLLENVAKSMGKDLGKEGLVRFRDTFGDAALRRIGVEPSPEVYTAFGDFATEASRFITLSRQAMEAQGILEPGATEAYKNATAIADRLASTFEGVNVTDVLVTATGLMMDAEPYLTNSIDNPVDDATRQKMKEPWQIILKLSQFEKAAQQQRKSFTMSLKEDNVLDGILLLHEASGTSVESPLMQQLDFGRIAEITEDHMLDASELRFLVQRVGALNEIYDVDDFAELMAEVEDNYRMVHGLPPVREERPS 570
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BLAST of NO04G01410 vs. NCBI_GenBank
Match: EWM28585.1 (hypothetical protein Naga_100009g23 [Nannochloropsis gaditana])

HSP 1 Score: 605.1 bits (1559), Expect = 2.400e-169
Identity = 328/490 (66.94%), Postives = 373/490 (76.12%), Query Frame = 0 
Query:  129 MLEAKGYTPEEIYAMQGVVSVLVKAGVLTVHADRLETADLSVLTKTTSTTGTPKRRKLQNMDGCCPCHVEAGHHPHPTIPPXXXXXXXXXXXXXXXXXXXXXXXXXA-----DADARACERTLAGCAMKEVQLAADRRSMYKTMKAYGLALRRTAAARSYYLYVKEEVHSFNEFEALSKAEQEATREELAAHLLLTCKAYGLNGEELQRYGKKLGFEVPDLTKTSDAELTRLATEMASTHMMESVAKAMGKDLGFEALKVLKDSMGDAALRRIGVEPSPALRVAFGEFASEASRFITLSRQAMEAQNMLDPEIDEAYTNATAMADRLAVMMEKVNVTDLLVTATGLMISAEPYLTSAIDNPVDEQVRHKTIQPWEIILKLSQVEKAAQQQRKSFAFGLKEGNALDGLVMLHNGNGARVESPLMQQLDFDMIEDITADHMLDASELRYLVQRVGALNEIYTVDDFADLMAEVEENYREVKGLPPVYGQEES 614
            MLE+KGYTPEEIYA+QGVV+VLV AGVLTVHA++LE ADLS LT  TSTTGTPKRR LQ+  GCCPC  +   +P   +                           A       D RACERTL GC  K VQLAADRRSMYK+MKA G ALRRTAAARSYYL+VK+EVHSF +FEALSK+EQEATR+ELA  LLLTCK YGL G ELQ Y + LG EVPDLTKTSDAEL  L  EMA+ H++E+VAK+MGKDLG E L   +D+ GDAALRRIGVEPSP +  AFG+FA+EASRFITLSRQAMEAQ +L+P   EAY NATA+ADRLA   E VNVTD+LVTATGLM+ AEPYLT++IDNPVD+  R K  +PW+IILKLSQ EKAAQQQRKSF   LKE N LDG+++LH  +G  VESPLMQQLDF  I +IT DHMLDASELR+LVQRVGALNEIY VDDFA+LMAEVE+NYR V GLPPV  +  S
Sbjct:    1 MLESKGYTPEEIYAVQGVVAVLVNAGVLTVHAEKLEAADLSELTTATSTTGTPKRR-LQSNVGCCPCSPDRHTNPPNLVHTKDEEIKHVAFNLTDDGASPPAHPMNAAPTPDRTDPRACERTLLGCEKKSVQLAADRRSMYKSMKAMGQALRRTAAARSYYLFVKDEVHSFEDFEALSKSEQEATRQELATQLLLTCKEYGLQGVELQEYARALGMEVPDLTKTSDAELENLGREMAAQHLLENVAKSMGKDLGKEGLVRFRDTFGDAALRRIGVEPSPEVYTAFGDFATEASRFITLSRQAMEAQGILEPGATEAYKNATAIADRLASTFEGVNVTDVLVTATGLMMDAEPYLTNSIDNPVDDATRQKMKEPWQIILKLSQFEKAAQQQRKSFTMSLKEDNVLDGILLLHEASGTSVESPLMQQLDFGRIAEITEDHMLDASELRFLVQRVGALNEIYDVDDFAELMAEVEDNYRMVHGLPPVREERPS 489
The following BLAST results are available for this feature:
BLAST of NO04G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28584.13.200e-19866.49hypothetical protein Naga_100009g23 [Nannochlorops... [more]
EWM28585.12.400e-16966.94hypothetical protein Naga_100009g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009673NSK009673Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01410.1NO04G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578434gene_1928Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g23gene2041Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01410.1NO04G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01410 ID=NO04G01410|Name=NO04G01410|organism=Nannochloropsis oceanica|type=gene|length=2397bp
ATGCACGCCACTGCCCTCCCTGCGCTCTCTCCAAAACAGAACAATCGGAC
TCTCCAGACCTTGACTCAATATTCACAGGTATTCCACGCTGCACCCATTC
CCAAAAAGCAGGGGAAAGGTCTATTGACGTTGAGCATGGCCGTTTTGGCG
TCATCCCCCATCTTTTTGGCCCCGCTGGCATTTCTCTTCGTCTTAGTTTG
CAGCCTGATTTCCCCGACGAAATGCGCGGAGCTCGTGCCCGACCGATGGC
ATGAGTTTGAGGTGCCCGTTGTGCCCGAGGACAAGgtaatgttcaaaata
caaaaaaggattaagcagagtgacaagatggggagcgtgaggcaagggtg
gagatttgagtggcctaggaagaatatgattgagcatgtggtccaatggg
ccggcaaaagagagtgcgcatggtgacggccctctgctactcatatcctc
ctctttgcagtttttttcgaacttctttcttcgtactatctacataccaa
tcaattacctcctcccctaccgcatctcttatcccctaacaatttcgaag
GATTACACTCAAATCAAGCTCAACCGTATAAGGGACGGCCACGTCGCCGT
TAATAAGCATACCGACCCCTCCGTCACGGCCGAGCTCTTGGTAGGGGACA
TGCTTGAAGCCAAAGGATACACTCCCGAGGAGATCTACGCCATGCAAGGC
GTGGTCTCTGTCCTCGTCAAAGCCGGTGTTCTGACTGTGCATGCCGACAG
GCTTGAGACCGCGGACCTCTCCGTCTTGACGAAAACTACCAGCACAACAG
GCACTCCCAAACGCCGCAAGCTCCAAAACATGGATGGTTGTTGTCCGTGC
CACGTGGAGGCCGGTCACCACCCCCATCCTACCATCCCGCCCCACTACAA
CAAGAACCAAGGAGGAGGTAATGCTGCCGCTCCTCCTAGCACCACCACAA
CCACTACTACTGCTCCAGCCGATGCAGATGCCCGGGCCTGCGAACGTACG
TTGGCCGGTTGCGCTATGAAAGAGGTTCAACTCGCAGCCGATCGCCGATC
GATGTACAAGACGATGAAAGCGTACGGGTTAGCCTTACGTCGGACAGCGG
CAGCCCGTTCGTATTATCTGTATGTGAAAGAAGAAGTTCACAGTTTCAAT
GAATTTGAAGCGCTGAGCAAAGCAGAGCAAGAAGCGACGCGGGAGGAGCT
AGCGGCCCACCTTCTTTTGACCTGCAAAGCATACGGGCTCAATGGAGAAG
AGCTCCAAAGGTATGGGAAAAAGCTTGGGTTTGAAGTCCCTGACTTAACC
AAGACCTCCGACGCAGAACTTACAAGGCTTGCGACGGAGATGGCGTCTAC
ACACATGATGGAGAGTGTGGCGAAAGCGATGGGCAAAGATCTGGGGTTTG
AAGCTTTGAAGGTCCTGAAGGACTCTATGGGAGATGCGGCCTTGAGGAGA
ATTGGGGTGGAGCCCTCACCGGCGTTACGCGTCGCGTTCGGGGAGTTTGC
TAGTGAAGCTTCTCGATTCATAACCTTGTCGAGACAAGCGATGGAGGCAC
AGAACATGTTGGATCCTGAGATAGACGAAGCCTACACAAACGCCACGGCA
ATGGCGGATCGTCTGGCTGTGATGATGGAAAAGGTAAATGTGACCGATTT
ACTCGTCACGGCGACAGGCTTGATGATTTCGGCCGAGCCTTACCTGACAA
GTGCAATCGACAATCCGGTGGATGAGCAGGTGAGGCATAAGACCATCCAA
CCCTGGGAGATTATTTTAAAATTGAGTCAAGTGGAAAAGGCGGCGCAGCA
GCAACGCAAGAGTTTCGCATTTGGTCTTAAGGAGGGCAATGCGCTGGATG
GGCTCGTTATGTTGCATAACGGAAACGGGGCCAGGGTGGAGAGCCCCTTG
ATGCAGCAGCTGGATTTTGACATGATTGAGGACATCACTGCAGgtgagtg
gtaccgggggtaaaagaagagggaggggctggtcggagggaaggggaagg
aaaagtgtgggggggtgggggggaacgatgggtggttgattttggactgg
gtgtattggataggacatactccgggttcattatatctcatgcttgtaca
tcatctttacaatttggaacgtctatgtctcatgtcgtggtgagcttttg
aacgtctctgtcactaacagtccatctcttcaccttaaaaatagATCACA
TGCTAGATGCATCCGAGCTGCGTTACCTCGTTCAGCGGGTAGGAGCCCTA
AACGAAATCTATACCGTTGACGACTTCGCGGATTTGATGGCCGAGGTGGA
GGAGAATTACAGGGAGGTCAAGGGCTTGCCACCTGTGTATGGACAAGAAG
AGAGTTTCAAAGTGGGGCAGGCCACAGTGACGAAGGCCAGGGTGTAA
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protein sequence of NO04G01410.1

>NO04G01410.1-protein ID=NO04G01410.1-protein|Name=NO04G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MHATALPALSPKQNNRTLQTLTQYSQVFHAAPIPKKQGKGLLTLSMAVLA
SSPIFLAPLAFLFVLVCSLISPTKCAELVPDRWHEFEVPVVPEDKDYTQI
KLNRIRDGHVAVNKHTDPSVTAELLVGDMLEAKGYTPEEIYAMQGVVSVL
VKAGVLTVHADRLETADLSVLTKTTSTTGTPKRRKLQNMDGCCPCHVEAG
HHPHPTIPPHYNKNQGGGNAAAPPSTTTTTTTAPADADARACERTLAGCA
MKEVQLAADRRSMYKTMKAYGLALRRTAAARSYYLYVKEEVHSFNEFEAL
SKAEQEATREELAAHLLLTCKAYGLNGEELQRYGKKLGFEVPDLTKTSDA
ELTRLATEMASTHMMESVAKAMGKDLGFEALKVLKDSMGDAALRRIGVEP
SPALRVAFGEFASEASRFITLSRQAMEAQNMLDPEIDEAYTNATAMADRL
AVMMEKVNVTDLLVTATGLMISAEPYLTSAIDNPVDEQVRHKTIQPWEII
LKLSQVEKAAQQQRKSFAFGLKEGNALDGLVMLHNGNGARVESPLMQQLD
FDMIEDITADHMLDASELRYLVQRVGALNEIYTVDDFADLMAEVEENYRE
VKGLPPVYGQEESFKVGQATVTKARV*
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Synonyms
Publications