NO04G01180, NO04G01180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_008301204.1 (PREDICTED: ribosome maturation protein SBDS [Stegastes partitus]) HSP 1 Score: 249.6 bits (636), Expect = 1.900e-62 Identity = 131/243 (53.91%), Postives = 169/243 (69.55%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL FG D++ + +QIL KGE SDKER++ LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V ++ KQQALEVI++L++ M + RA M LR V P E A+ + K + +E EM LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 45 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQSQLETMFRDIATIVAEKCVNPDTKRPYTVNLIERAMKDIHYSVKANKSTKQQALEVIRQLKETMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 285
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_020504898.1 (ribosome maturation protein SBDS [Labrus bergylta]) HSP 1 Score: 249.6 bits (636), Expect = 1.900e-62 Identity = 130/243 (53.50%), Postives = 171/243 (70.37%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQT+++F+NVSKG A +DL+ FG D++ + QIL KGE SDKER++ LE+T+RDIATIVAEK VNP + RPYTV +I MK+IH+++ P +++KQQALEVI++L + M + RA M LR V P E A+ + K + +E EM LVDPG +R +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRTGAEKDLDEVLQTNSVFINVSKGQTAKKEDLIKAFGTDDLTEICTQILAKGELQVSDKERQSQLETTFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSIKPNKSSKQQALEVIRQLTETMQIQRAHMRLRLVLPAKE--AKRLKEKLKPLMQVVESEDFDEELEMVCLVDPGCYREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_020784253.1 (ribosome maturation protein SBDS [Boleophthalmus pectinirostris]) HSP 1 Score: 249.6 bits (636), Expect = 1.900e-62 Identity = 130/243 (53.50%), Postives = 169/243 (69.55%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL FG D++ + +QIL KGE SDKER+ LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V ++ KQQALEVI++L++ M + RA M LR V P E A+ + K + +E EM +LVDPG +R +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQTQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKANKSTKQQALEVIRQLKETMEIQRAHMRLRLVLPAKE--AKRLKEKLKTLLQVVESEDFDEELEMVVLVDPGCYREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_005813071.1 (ribosome maturation protein SBDS [Xiphophorus maculatus]) HSP 1 Score: 249.2 bits (635), Expect = 2.500e-62 Identity = 130/243 (53.50%), Postives = 169/243 (69.55%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL+ FG + + +QIL KGE SDKER++ LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V P ++ KQQALEVI++L++ M + RA M LR P E A+ + K + +E EM +LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQMAKKDDLVKAFGTGDQTEICKQILSKGELQVSDKERQSQLEAMFRDIATIVAEKCVNPNTKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKETMEIQRAHMRLRLEVPAKE--AKRLREKLKPLLQVVESEEFDEELEMVVLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_022197025.1 (ribosome maturation protein SBDS [Nilaparvata lugens]) HSP 1 Score: 249.2 bits (635), Expect = 2.500e-62 Identity = 133/247 (53.85%), Postives = 171/247 (69.23%), Query Frame = 0 Query: 4 RIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARGS--LQVLELNVQQEGE 249 +I P NQ+RLTNVA+VRM KGGKRFEIACYRNKV+SWR VE DIDEVLQTH +F+NVSKG +A +DLM CFG+D++ + ++IL KGE SDKER L+S ++DIAT VAEK VNP + RPY+V +I MK++HF+V P RNAKQQAL+VI +L+ MPL+RA+M L+ + E ++ G + GT + LL+DPG +R VDELVR +GS L+VL L EGE Sbjct: 3 KIFTPTNQIRLTNVAVVRMKKGGKRFEIACYRNKVMSWRSKVEKDIDEVLQTHMVFMNVSKGQVAKKEDLMKCFGKDDMTEVCKEILAKGELQVSDKERHTHLDSLFKDIATTVAEKCVNPETKRPYSVSLIEKAMKDVHFSVKPNRNAKQQALDVIPQLKATMPLERAQMRLQVIASGKETRKLRDKVVKLAGSIETESWDDGT-LNLVLLIDPGHYREVDELVRSETKGSGQLEVLNLKEVTEGE 248
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_007552473.1 (PREDICTED: ribosome maturation protein SBDS [Poecilia formosa] >XP_014847872.1 PREDICTED: ribosome maturation protein SBDS [Poecilia mexicana]) HSP 1 Score: 248.4 bits (633), Expect = 4.200e-62 Identity = 129/243 (53.09%), Postives = 169/243 (69.55%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL+ FG + + +QIL KGE SDKER++ LE+ +RDIA+IVAEK VNP + RPYTV +I MK+IH++V P ++ KQQALEVI++L++ M + RA M LR P E A+ + K + +E EM +LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGTEKDLDEVLQTHSVFVNVSKGQMAKKDDLVKAFGTGDQTEICKQILSKGELQVSDKERQSQLETMFRDIASIVAEKCVNPDTKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKETMEIQRAHMRLRLAVPAKE--AKRLREKLKPLLQVVESEEFDEELEMVVLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_014888190.1 (PREDICTED: ribosome maturation protein SBDS [Poecilia latipinna]) HSP 1 Score: 248.4 bits (633), Expect = 4.200e-62 Identity = 129/243 (53.09%), Postives = 169/243 (69.55%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL+ FG + + +QIL KGE SDKER++ LE+ +RDIA+IVAEK VNP + RPYTV +I MK+IH++V P ++ KQQALEVI++L++ M + RA M LR P E A+ + K + +E EM +LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQMAKKDDLVKAFGTGDQTEICKQILSKGELQVSDKERQSQLETMFRDIASIVAEKCVNPDTKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKETMEIQRAHMRLRLAVPAKE--AKRLREKLKPLLQVVESEEFDEELEMVVLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_010900947.1 (PREDICTED: ribosome maturation protein SBDS [Esox lucius]) HSP 1 Score: 248.1 bits (632), Expect = 5.500e-62 Identity = 132/243 (54.32%), Postives = 172/243 (70.78%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQT ++F NVSKG +A DL FG D++ + +QIL KGE SDKER++ LE++YRDIATIVAEK VNP + RPYTV +I MK+IH++V P ++ KQQALEVI++L+D M + RA M LR V P A+D + L+ + I +E + EM LVDPG +R +DEL+R +GSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVISWRSGAEKDLDEVLQTSSVFNNVSKGQVAKKDDLSKAFGTDDLTEICKQILAKGELQVSDKERQSQLETSYRDIATIVAEKCVNPETKRPYTVNLIERAMKDIHYSVKPNKSTKQQALEVIRQLKDSMEIQRAHMRLRLVLP-AKDGKRLKEKLKPL-IKVMESEDFDDQLEMVCLVDPGCYREMDELIRCETKGKGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_022059906.1 (ribosome maturation protein SBDS [Acanthochromis polyacanthus]) HSP 1 Score: 248.1 bits (632), Expect = 5.500e-62 Identity = 132/245 (53.88%), Postives = 169/245 (68.98%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAED--LAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL FG D++ + +QIL KGE SDKER++ LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V ++ KQQALEVI++L++ M + RA M LR V P E L E + L + +E EM LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKSFGTDDLTEICKQILAKGELQVSDKERQSQLETMFRDIATIVAEKCVNPNTKRPYTVSLIERAMKDIHYSVKANKSTKQQALEVIRQLKETMEIQRAHMRLRLVLPAKEGKRLKEKLKPL----LQVVESEDFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_024133468.1 (ribosome maturation protein SBDS [Oryzias melastigma]) HSP 1 Score: 248.1 bits (632), Expect = 5.500e-62 Identity = 131/243 (53.91%), Postives = 167/243 (68.72%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG A DL+ FG ++ + +QIL KGE SDKER+ LE+ +RDIAT VA+K VNP + RPY V MI MK+IH++V P ++AKQQALEVI++L++ M + RA M LR V P E A+ + K + +E EM LVDPG FR +DEL+R RGSL+VL L +EGE Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRTGAEKDLDEVLQTHSVFMNVSKGQTAKKDDLVKAFGTEDQTEICKQILAKGELQVSDKERQTQLETMFRDIATTVADKCVNPDTKRPYPVSMIERAMKDIHYSVKPNKSAKQQALEVIRQLKETMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGE 246 The following BLAST results are available for this feature:
BLAST of NO04G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01180 ID=NO04G01180|Name=NO04G01180|organism=Nannochloropsis oceanica|type=gene|length=1380bpback to top protein sequence of NO04G01180.1 >NO04G01180.1-protein ID=NO04G01180.1-protein|Name=NO04G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bpback to top Synonyms
Publications
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