NO04G01020, NO04G01020 (gene) Nannochloropsis oceanica

Overview
NameNO04G01020
Unique NameNO04G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1274
Alignment locationchr4:328419..329692 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:328419..329692 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G01020 vs. NCBI_GenBank
Match: EWM28454.1 (hypothetical protein Naga_100636g3 [Nannochloropsis gaditana])

HSP 1 Score: 387.9 bits (995), Expect = 3.400e-104
Identity = 207/288 (71.88%), Postives = 230/288 (79.86%), Query Frame = 0
Query:   60 KGPSPVPGKSGNESRTPSRAELYNKKTNQNVSESMEEVTGMRRRRNQDVPCNREPSPDHPSSSSMXXXXXXXXXXXXXATSTPGGGSAVLSAVARGMLGVSKWTLGSVANQLGGPFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQENAAYSRERVAQMSPFEPGGIG 348
            +GPSP PG++ +ESR      LY++   QNVSESMEEVTG+RRR        R PSP+     +               +STPGGG +VL A+ RG+LGVSKWTLGS++NQLG PF W EFMFAWV ++TPPRLKRLA IFWDAGAHITKLAYT GG ELGFAARNVIDGLVET+AAPKGRA VLE GMTFVK AEAVDTPEMHAAITQGFKLG+RGLEVLATEQAKD +SN+SDFLSRL RLANAPETTLAVAEFVTVVCHALAQENAAYSRERV+Q+SPFE  G G
Sbjct:   88 RGPSPYPGRT-SESRA---GLLYHQNVAQNVSESMEEVTGLRRR--HPAASERAPSPERDGVHAQ--------GADRRRSSTPGGGPSVLGALGRGVLGVSKWTLGSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAYSRERVSQLSPFEGAGEG 361          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: ETI36793.1 (hypothetical protein F443_17137 [Phytophthora parasitica P1569] >ETK77002.1 hypothetical protein L915_16679 [Phytophthora parasitica] >ETL30445.1 hypothetical protein L916_16585 [Phytophthora parasitica] >ETL83671.1 hypothetical protein L917_16407 [Phytophthora parasitica] >ETM36865.1 hypothetical protein L914_16514 [Phytophthora parasitica] >ETO65513.1 hypothetical protein F444_17179 [Phytophthora parasitica P1976] >ETP06616.1 hypothetical protein F441_17011 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 71.2 bits (173), Expect = 7.000e-9
Identity = 48/183 (26.23%), Postives = 92/183 (50.27%), Query Frame = 0
Query:  148 VLSAVARGMLGVSKWTLGSVANQLGG----PFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQE 327
            ++ AV      V +  +  VA++L G    P      ++  +  +TP R + L  +   A ++   +   E G +LG + + + D  V   ++  GR +VL S  T  K+A+A++TPE  AA  Q F+     ++  A++  + ++S+ S+ L+  + +A +PE ++ +AE  T + H L  E
Sbjct:    2 IMDAVWWATTKVDESVVNPVASRLAGSVANPAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: XP_008912480.1 (hypothetical protein PPTG_16751 [Phytophthora parasitica INRA-310] >ETN02097.1 hypothetical protein PPTG_16751 [Phytophthora parasitica INRA-310] >KUF66368.1 hypothetical protein AM587_10010629 [Phytophthora nicotianae] >KUF82567.1 hypothetical protein AM587_10005151 [Phytophthora nicotianae])

HSP 1 Score: 71.2 bits (173), Expect = 7.000e-9
Identity = 48/183 (26.23%), Postives = 92/183 (50.27%), Query Frame = 0
Query:  148 VLSAVARGMLGVSKWTLGSVANQLGG----PFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQE 327
            ++ AV      V +  +  VA++L G    P      ++  +  +TP R + L  +   A ++   +   E G +LG + + + D  V   ++  GR +VL S  T  K+A+A++TPE  AA  Q F+     ++  A++  + ++S+ S+ L+  + +A +PE ++ +AE  T + H L  E
Sbjct:    2 IMDAVWWATTKVDESVVNPVASRLAGSVANPAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: ETP34700.1 (hypothetical protein F442_17012 [Phytophthora parasitica P10297])

HSP 1 Score: 71.2 bits (173), Expect = 7.000e-9
Identity = 48/183 (26.23%), Postives = 92/183 (50.27%), Query Frame = 0
Query:  148 VLSAVARGMLGVSKWTLGSVANQLGG----PFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQE 327
            ++ AV      V +  +  VA++L G    P      ++  +  +TP R + L  +   A ++   +   E G +LG + + + D  V   ++  GR +VL S  T  K+A+A++TPE  AA  Q F+     ++  A++  + ++S+ S+ L+  + +A +PE ++ +AE  T + H L  E
Sbjct:    2 IMDAVWWATTKVDESVVNPVASRLAGSVANPAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: OEU07047.1 (hypothetical protein FRACYDRAFT_252149 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 71.2 bits (173), Expect = 7.000e-9
Identity = 48/147 (32.65%), Postives = 78/147 (53.06%), Query Frame = 0
Query:  188 ITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARN----VIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQENAAY 331
            ITPPR++    I   +  H   +    G +  G   R+    V+   +E  +AP+ R +V+++  T VKLA A+ TPEM   + Q   LG R ++ LA+ ++K+ + N    L     LA+ P TTLA+AE    +CHAL + + ++
Sbjct:  250 ITPPRVQDWFRIISSSVYHFFTVV-VSGSSLHGMQFRSQVGVVVQSFLEAWSAPESRQVVVDTMATGVKLAGALHTPEMELFLEQVGVLGCRFVDALASGKSKEFIHNSKTLLWNGIELASDPSTTLALAEVTAHLCHALEEVDDSF 395          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: XP_009525774.1 (hypothetical protein PHYSODRAFT_544573 [Phytophthora sojae] >EGZ16716.1 hypothetical protein PHYSODRAFT_544573 [Phytophthora sojae])

HSP 1 Score: 68.9 bits (167), Expect = 3.500e-8
Identity = 47/183 (25.68%), Postives = 90/183 (49.18%), Query Frame = 0
Query:  148 VLSAVARGMLGVSKWTLGSVANQLGG----PFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQE 327
            ++ AV      V +  +  VA++L G    P      ++  +  +TP R + L  +   A A+   +   E G  LG + + + +      ++  GR +VL    T  K+A+A++TPE  AA  Q F+     ++  A++  + ++S+MS+ L+    +A +PE+++ +AE  T + H L  E
Sbjct:    2 IVDAVRWATTKVDESVVNPVASRLAGSVANPAVLSFLLWDRLKTLTPQRARDLTRLLATALANALGVFGAERGQRLGASTKQLQEDFARAASSRSGRDVVLNGVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRRIISSMSECLTSATEMAASPESSIFLAELATNLLHTLESE 184          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: POM68353.1 (Hypothetical protein PHPALM_15499 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 68.9 bits (167), Expect = 3.500e-8
Identity = 42/160 (26.25%), Postives = 82/160 (51.25%), Query Frame = 0
Query:  167 VANQLGGPFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQE 327
            +A+ +  P      ++  +  +TP R + L  +   A A+   +   E G +LG + + +    V   ++  GR +VL S  T  K+A+A++TPE  AA  Q F+     ++  A++  + ++S+ S+ L+  + +A +PE ++ +AE  T + H L  E
Sbjct:   25 LADSVANPAVLSFLLWDRLKTLTPQRARDLTRLVATALANALGVFGAERGQQLGASTKQLQQDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRRIISSSSECLTSASEMAASPEASIFLAELATNLLHTLESE 184          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: OQS06597.1 (hypothetical protein THRCLA_01374 [Thraustotheca clavata])

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-7
Identity = 43/164 (26.22%), Postives = 84/164 (51.22%), Query Frame = 0
Query:  165 GSVANQLGGPFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQENA 329
            GS+AN    P+     ++  + + TP R + ++ +   A ++   +  ++   E   + + + D  +   A P+G+ LV +   T  K ++A++TPE  AA  Q  K     +++LAT Q   ++ +  ++ S L  +A +PE+T+ + E  T +CH L  +NA
Sbjct:   47 GSIAN----PYVLSSKIWDTLKEATPQRARDVSRLISLAISNSALILSSDNTIEWSQSTKALRDHTLAMAATPQGQILVQDCIATVAKTSQALNTPETKAATKQFTKAIQSWIQMLATPQGMQVIDDFGNWASYLTDIAASPESTIFLLEVATNLCHVLTSDNA 206          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: XP_002899890.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY60517.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 66.2 bits (160), Expect = 2.200e-7
Identity = 45/183 (24.59%), Postives = 90/183 (49.18%), Query Frame = 0
Query:  148 VLSAVARGMLGVSKWTLGSVANQLGG----PFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQE 327
            ++ AV      V +  +  VA++L G    P      ++  +  +TP R + L  +   A ++   +   E G + G + + + +  V   ++  GR +VL S  T  K+A+A++TPE  AA  Q F+     ++  A++  + ++S+  + L+  + +A +PE ++ +AE  T + H L  E
Sbjct:    2 IMDAVRWATNKVDESVVNPVASRLAGSVVNPAVLSFLLWDRLKSLTPQRARDLTRLLATALSNALGVFGAERGTQFGDSTKQLQEDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVIDFFASDDGRRIISSTGECLASASEMAASPEASIFLAELATNLLHTLESE 184          
BLAST of NO04G01020 vs. NCBI_GenBank
Match: OWZ09855.1 (hypothetical protein PHMEG_00017374, partial [Phytophthora megakarya])

HSP 1 Score: 65.5 bits (158), Expect = 3.800e-7
Identity = 41/160 (25.62%), Postives = 78/160 (48.75%), Query Frame = 0
Query:  167 VANQLGGPFGWGEFMFAWVSDITPPRLKRLATIFWDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTFVKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLARLANAPETTLAVAEFVTVVCHALAQE 327
            +A+ +  P      ++  +  +TP R + L  +   A A+   +   E G +L  +   V        ++  GR +VL S  T  K+A+A++TPE  AA  Q F+     ++  A+E  + ++S+  + L+  + +A +PE ++ +AE  T + H L  E
Sbjct:   19 LADSVANPAVLSFLLWDRLKTLTPQRARDLTRLLATALANALSVFSAERGQQLRTSTNQVQQAFARAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASEDGRRIISSTGECLTSASDMAASPEASIFLAELATNLLHTLESE 178          
The following BLAST results are available for this feature:
BLAST of NO04G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM28454.13.400e-10471.88hypothetical protein Naga_100636g3 [Nannochloropsi... [more]
ETI36793.17.000e-926.23hypothetical protein F443_17137 [Phytophthora para... [more]
XP_008912480.17.000e-926.23hypothetical protein PPTG_16751 [Phytophthora para... [more]
ETP34700.17.000e-926.23hypothetical protein F442_17012 [Phytophthora para... [more]
OEU07047.17.000e-932.65hypothetical protein FRACYDRAFT_252149 [Fragilario... [more]
XP_009525774.13.500e-825.68hypothetical protein PHYSODRAFT_544573 [Phytophtho... [more]
POM68353.13.500e-826.25Hypothetical protein PHPALM_15499 [Phytophthora pa... [more]
OQS06597.11.700e-726.22hypothetical protein THRCLA_01374 [Thraustotheca c... [more]
XP_002899890.12.200e-724.59conserved hypothetical protein [Phytophthora infes... [more]
OWZ09855.13.800e-725.63hypothetical protein PHMEG_00017374, partial [Phyt... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01020.1NO04G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01020.1NO04G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01020 ID=NO04G01020|Name=NO04G01020|organism=Nannochloropsis oceanica|type=gene|length=1274bp
ATGACCGACGACTCGTCGGACCAACAACAATCCAGGGCCCCCTATCCTCC
GCCACGTCCTCCCCTTCCTCCTGCTCCTGCCAAAGTAAGCGGAAGTGGCG
GCGGGGTCAAGGGCAGTAGCCCTTTCTACAGCATCAGTGACAACAGTACT
GGGGGCGGCGGCAGCACCAGCAACACTAAAGGTCCCTCCCCTGTCCCTGG
CAAAAGCGGCAACGAATCCCGCACCCCTTCTCGCGCGGAACTATACAACA
AGAAAACCAATCAAAACGTGAGTGAAAGCATGGAGGAAGTCACGGGCATG
CGAAGACGCCGTAACCAGGACGTGCCCTGCAACCGCGAACCATCGCCCGA
CCATCCATCCTCTTCCTCTATGAGCCGTCAAAGCGAAGGTGGGGAAGGGT
CAGGAAGGAGCGCCACTTCCACACCCGGTGGAGGTAGTGCAGTTTTGAGT
GCCGTGGCCCGTGGGATGCTGGGCGTGAGTAAGTGGACGTTGGGATCTGT
GGCGAACCAGCTGGGCGGGCCGTTCGGATGGGGGGAGTTCATGTTTGCAT
GGGTGAGTGATATTACCCCTCCGAGACTTAAGCGGTTGGCAACGATTTTT
TGGGATGCCGGTGCGCATATTACCAAGTTGGCCTATACGGAGGGTGGGAA
TGAGTTGGGGTTTGCGGCACGGAACGTGATTGATGGGCTAGTGGAGACGG
TGGCGGCGCCGAAGGGAAGAGCGTTGGTGTTGGAAAGTGGGATGACCTTT
GTAAAGTTGGCAGAGGCGGTGGATACGCCGGAGATGCACGCGGCGATTAC
TCAGGGGTTCAAGCTGGGGACGAGAGGGTTGGAAGTGTTAGCTACCGgtg
ggtgtgggtgtgggtgtgggtgtttgtgtgagcatgtgcccgcctccctg
taagctggtggctatgtatggatgaatatcttcatctcatgttgtaagtt
gtctgtgtgtatgtgtgggtttgcttgccttcccttgtacatataataat
gtcagccgaagtggtcactcatttcctccctccctctctccccccctcct
tccttccccccccccccccttcagAGCAAGCCAAAGACCTCATGTCCAAC
ATGTCGGACTTCCTCTCCCGGCTTGCCCGTCTTGCCAACGCCCCCGAAAC
AACCCTAGCCGTTGCGGAATTCGTCACGGTGGTATGCCATGCACTAGCGC
AGGAAAACGCGGCGTACAGTAGGGAGAGGGTGGCGCAGATGTCGCCGTTT
GAGCCGGGGGGGATCGGGGGGTAG
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protein sequence of NO04G01020.1

>NO04G01020.1-protein ID=NO04G01020.1-protein|Name=NO04G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MTDDSSDQQQSRAPYPPPRPPLPPAPAKVSGSGGGVKGSSPFYSISDNST
GGGGSTSNTKGPSPVPGKSGNESRTPSRAELYNKKTNQNVSESMEEVTGM
RRRRNQDVPCNREPSPDHPSSSSMSRQSEGGEGSGRSATSTPGGGSAVLS
AVARGMLGVSKWTLGSVANQLGGPFGWGEFMFAWVSDITPPRLKRLATIF
WDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTF
VKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLA
RLANAPETTLAVAEFVTVVCHALAQENAAYSRERVAQMSPFEPGGIGG*
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Synonyms
Publications