NO04G00660, NO04G00660 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G00660
Unique Name	NO04G00660
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1487
Alignment location	chr4:234381..235867 +

Link to JBrowse

Properties


Property Name	Value
Description	Essential protein Yae1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:234381..235867 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

Homology

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BLAST of NO04G00660 vs. NCBI_GenBank
Match: EWM28502.1 (Essential protein Yae1 [Nannochloropsis gaditana])

HSP 1 Score: 81.3 bits (199), Expect = 4.500e-12
Identity = 52/129 (40.31%), Postives = 63/129 (48.84%), Query Frame = 0

Query:  106 YYKACCQTWLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGMGLVMDMQIEERVIRTMENIVQLVNDFPRHNSPDIDIAEQVQRLRAKFRAAASILGVAVAFALHKTSRHGSGGGIAAVAEGLSF 235
            +YKAC QTWL                                      +MD     R IRT+E I++LV DFPR N  D+D+A  VQRLRAKFRA  S+LGV+V F+LHK+ R   G     V E LSF
Sbjct:   62 FYKACSQTWLFVIKDSITGEGEKGRSKEFGEI-----------AAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFSLHKSGRISDGETAGGVGE-LSF 178

The following BLAST results are available for this feature:

BLAST of NO04G00660 vs. NCBI_GenBank

BLAST of NO04G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28502.1	4.500e-12	40.31	Essential protein Yae1 [Nannochloropsis gaditana]	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL077	nonsL077	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR059	ncniR059	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR105	ngnoR105	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009747	NSK009747	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G00660.1	NO04G00660.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628049	gene_1846	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100058g20	gene2095	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G00660.1	NO04G00660.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G00660 ID=NO04G00660|Name=NO04G00660|organism=Nannochloropsis oceanica|type=gene|length=1487bp
CAGCACCGCGCTCCCTCCCCCCACGCCGTAGAAATCCGCATAACAAGCCT
GGAAATATGGCGGATGACGAAGCAGAACTTAACAAGGTTACCAATGATTT
GGACCTGGACGCGGTGGTTTACCTCGACGAGACCTGGCACCAAGAAGGTT
TCGAGGAAGGGAAGGAGGCGGGCCGACAACGGGGACATAGGGAAGGGAGA
GCAGTCGGGTACGTGTGATAATTTGAAAAAGAGAAGGACGAAGAGTGGTA
GTAGGAAGGAAGTAGAGAAAAATGGTTAGTTGGGGGGAAATATGCCCGGG
AAGACGTCAGTGACAGAAAATAAAGGGAGGAGTAGAGTCGTGCATTTGTT
GGAAGGGGCTCGCGGATGCTCCCCAGGAGAGGCGAATGAGACGATGACTG
GAAGAAAAGCGACGCTAATGGGACCCCTACATCTTTATTCCTTATTGCAA
ACAACGCCGAGGAGGAGATCATTTGTGCTTCCAATCGTCCTATTTGACTT
GTCGGGGGCGATTGCAGGATTGTCATACCACTCCATTCATGTCTGCCACG
TATCCGTCATCACACAAAGCAAGGCTAAGGGTTTTGAGATTGGCTGCGAA
ATAGGATACTACAAAGCATGCTGTCAGACGTGGCTGGCAGTGCTGCGCCG
AAGAAAGAGTGAGAAGAAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGTCTGAAGGGGAGGCAAGAAAGGAAAACGGAGGAATGGGCCTG
GTGATGGACATGCAAATCGAGGAGAGgtaagggtgatttgcgaatcatgc
atatacgacattcgattaaattttctcaagaaatagagtccacaggggaa
ggggtaggcaagccatgatgaccaaaagatacggggcgcactcactcaac
tgacattgctatcctcctctcgtttccctcgcatacacagGGTAATCAGG
ACTATGGAAAATATCGTTCAGCTCGTCAACGACTTTCCTCGACATgtagg
tttctcaatgatcgtttaatttcgttgttggttggtaggacggacaaggg
atattcttacatttgtatacagcctgaattatcttctgccccctttactg
cactacgagaccgtgaagttgttatctgttctcgacgttcacttactcat
attttctggtgattatttctccgttttcttcgcttagAACTCCCCCGACA
TTGACATAGCCGAGCAAGTCCAACGACTCCGCGCCAAATTTCGAGCAGCC
GCGTCCATCCTGGGTGTGGCGGTGGCCTTCGCCTTGCACAAGACCAGCCG
ACATGGATCAGGCGGGGGAATCGCGGCGGTAGCCGAGGGATTGTCGTTTT
AGGGTAGAGTCGCATGTAGATAAAAGCTTGTGAAATAAAGACAGGACATT
GATAGATGGGCGATAGGGTGATTTTTAAAGGAAGGAGACAGAATAAGTGA
ATTGGCTCAATGAAATGACATAAATACCTCATGTAGA

protein sequence of NO04G00660.1

>NO04G00660.1-protein ID=NO04G00660.1-protein|Name=NO04G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MPGKTSVTENKGRSRVVHLLEGARGCSPGEANETMTGRKATLMGPLHLYS
LLQTTPRRRSFVLPIVLFDLSGAIAGLSYHSIHVCHVSVITQSKAKGFEI
GCEIGYYKACCQTWLAVLRRRKSEKKEEEEEEEEEEEEESEGEARKENGG
MGLVMDMQIEERVIRTMENIVQLVNDFPRHNSPDIDIAEQVQRLRAKFRA
AASILGVAVAFALHKTSRHGSGGGIAAVAEGLSF*

Synonyms

Publications