NO04G00550, NO04G00550 (gene) Nannochloropsis oceanica

Overview
NameNO04G00550
Unique NameNO04G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1477
Alignment locationchr4:195719..197195 -

Link to JBrowse

Properties
Property NameValue
DescriptionSET domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:195719..197195 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Homology
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BLAST of NO04G00550 vs. NCBI_GenBank
Match: EWM28495.1 (SET domain protein [Nannochloropsis gaditana])

HSP 1 Score: 188.3 bits (477), Expect = 3.400e-44
Identity = 110/228 (48.25%), Postives = 132/228 (57.89%), Query Frame = 0 
Query:   70 RSISVEKVVSTSSGPSHNKP-MVTLRSGIQATDAEEVAALVHATDALVPCLEVKPSFIPGAGDGLFTAVDLPALKPLVLYYGELRKEKAQGRYCIQVGPSLTLDAEALLSFSSGYEGGATALASGAGRGDETKTQNLGRYVNDARGQARLENNMRYGRLLRFDHYDEKANSVLKGKGNDAAQCQRRIRSKRPPCVVMYSTRNIKAGEELLASYGKWYWQRWGDMREPP 297
            R++S++   +        +P MV LRSG   T+   + AL+   DALVPCL V+PS I GAGDGL+T+VDLPA KPLVLYYG+LR+EKAQGRYCIQVGP LTLDAEA+ SF          + +G  R       NLGRYVNDA+GQ  ++N                                   R  RPPCVVMYSTR I+AGEELLASYG  YW RWG +   P
Sbjct:   27 RNLSLKNRATLQPFGGKGRPFMVKLRSGAYHTEKGSIQALLQEVDALVPCLAVRPSSIHGAGDGLWTSVDLPAQKPLVLYYGDLRREKAQGRYCIQVGPKLTLDAEAVHSFVCDNADATVDVENGHLR--YGSMLNLGRYVNDAKGQPDMQNXXXXXXXXXXXXXXXXXXXXXXK------------RESRPPCVVMYSTRKIRAGEELLASYGTVYWARWGSLLAEP 240
The following BLAST results are available for this feature:
BLAST of NO04G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28495.13.400e-4448.25SET domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL077nonsL077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009736NSK009736Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00550.1NO04G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578102gene_1836Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100058g11gene2087Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00550.1NO04G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00550 ID=NO04G00550|Name=NO04G00550|organism=Nannochloropsis oceanica|type=gene|length=1477bp
ATGAGAGGTAGAGGATTGGCGGGAGGGGAAGCAGCAGTAGCAGCAGCATC
AGTAGCCGAGGAGGAGAAGGAGGATGAAGAGGAGAAGGAGAAGGAGGAAA
AGAGGGGTGGTGGGATTTTACTTGCCGGCGGACTTTGTTGGTATGAAGCC
TGTAAACACGTCGTATCTCGAGATGGCAATGCGGCACGCAACATCCTGCG
GTTTTTTAGGAGTATTTCAGTGGAGAAAGTCGTCTCCACGAGCTCCGgta
tggtcaatcgcggcaggtgatgcggacgttgtataagttgccttccctct
gacctcctctttttttttccttctcctagccctgtatgggccatccgagg
acttcactggtgaaatccctgtcaaagccatttaaaactcggcaaaaata
agggaggaatatgcaatgatctatcgttggaaggctttccgtcgtgctta
atcctaagaggaggcacgcttgtgtaaatacaggtgtttgcatttgtctg
cggattggttgcacgcgataattttgggattgtaggaaactacagagaag
ctcgaacaaccatacatgacgccaatttgcccgactcggacgccagtcgg
tgcggggctctacgttttgtgtctttatgtgtatgtgtctattcaagtgg
ccaactgggctgcgcgtaggcaaaggaaaccaggaataactaattagttt
tatgccgtgttttatctgaacgtaaggacggctagcttgctttccttctc
acaaccaccacttcacggcgacatagcaactcgtcacgatacttcgtaca
tcctagGCCCATCCCACAACAAGCCTATGGTCACGCTACGGTCGGGGATC
CAGGCAACGGACGCTGAGGAAGTTGCGGCACTGGTACATGCCACTGATGC
CCTTGTCCCCTGCCTAGAAGTCAAACCCTCTTTCATACCCGGGGCGGGAG
ACGGCCTGTTTACTGCAGTTGACCTTCCGGCGCTGAAACCCTTGGTGCTG
TATTATGGAGAGCTTCGAAAAGAGAAGGCGCAAGGTCGGTACTGCATTCA
AGTAGGTCCTTCTTTGACCTTGGATGCGGAGGCCTTGCTGTCGTTTTCAA
GCGGCTACGAGGGAGGCGCCACGGCTTTGGCATCGGGTGCGGGAAGAGGG
GATGAGACCAAGACGCAGAACTTGGGTCGATACGTCAATGATGCTCGCGG
GCAAGCACGTCTGGAGAACAATATGCGCTACGGCAGGTTATTGCGATTTG
ACCATTACGATGAGAAGGCGAACAGCGTCTTGAAAGGAAAGGGGAATGAC
GCAGCCCAGTGTCAAAGGAGAATACGGAGCAAGCGACCACCGTGTGTCGT
CATGTACAGCACACGGAATATCAAGGCGGGGGAAGAGCTGCTTGCTTCGT
ATGGTAAGTGGTACTGGCAACGGTGGGGAGATATGCGTGAGCCTCCGGAT
GGAGTAATGGAAAATAGAGAAGAGTGA
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protein sequence of NO04G00550.1

>NO04G00550.1-protein ID=NO04G00550.1-protein|Name=NO04G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MRGRGLAGGEAAVAAASVAEEEKEDEEEKEKEEKRGGGILLAGGLCWYEA
CKHVVSRDGNAARNILRFFRSISVEKVVSTSSGPSHNKPMVTLRSGIQAT
DAEEVAALVHATDALVPCLEVKPSFIPGAGDGLFTAVDLPALKPLVLYYG
ELRKEKAQGRYCIQVGPSLTLDAEALLSFSSGYEGGATALASGAGRGDET
KTQNLGRYVNDARGQARLENNMRYGRLLRFDHYDEKANSVLKGKGNDAAQ
CQRRIRSKRPPCVVMYSTRNIKAGEELLASYGKWYWQRWGDMREPPDGVM
ENREE*
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Synonyms
Publications