NO04G00520, NO04G00520 (gene) Nannochloropsis oceanica

Overview
NameNO04G00520
Unique NameNO04G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2162
Alignment locationchr4:191372..193533 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:191372..193533 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G00520 vs. NCBI_GenBank
Match: EWM28506.1 (hypothetical protein Naga_100058g9 [Nannochloropsis gaditana])

HSP 1 Score: 334.3 bits (856), Expect = 7.600e-88
Identity = 201/376 (53.46%), Postives = 248/376 (65.96%), Query Frame = 0 
Query:  227 GWFSLLSLPWSGGFASFNSEWKDQLALAKKIKKLEKEVADDYIRGSRAKAAQYRYEALRTLEEVQ---GGREGGQGALEFDPIIAGKTMKSQRLEVKDAKLXXXXXXXXXXXXXXXXGQREESMP-----LKPEDLDRMLQQLESVVKDEQQWARLASACVGALLGLLLIPSHNFFGVTFLALFVTFLTTTPGLVGDAARMSGYGLLSLANALGQFEKKFAVLRRVREAMWDMAEASIPF-KLEFKDENSLKHWRNAYKGEGFLHPDIRPAPPMRDAQYVEYLREVKKWVEVEEREVLRALRKKEDERASGLREXXXRRERMQKVLVGLWEGSATAATMVGG-MVMSKREGGMGEVEKEFKGEGGMDDDVAFLKRF 593
            GWFS L  PWS GFA+FN+EWK+Q+ LAK+IKKLEKEVA D  RG RAK AQYRY+AL+TLEEV+    GR  G+G   FDP +AGK+ KS +LEV+DA L                G ++   P     ++PED D +L QLE+  K EQ+WARLASA +GA LG+ L+PSH+ +          FLTTTPG+VGDA RM+GY  +S+  A    E+K AVL ++R  +W  +EAS PF + EF     L  WRNAY GEGFLHP IRPAPPMRDAQYVEYL+EVK+WVEVEE+EVL+ALR+KEDER   + EXXX          GLW+G     T +   +V S  EGG     +E  GEGGM+DD+AFLKRF
Sbjct:  206 GWFSSLLYPWS-GFAAFNTEWKEQMVLAKRIKKLEKEVARDSTRGQRAKVAQYRYDALKTLEEVEAARAGRSSGEGG-SFDPALAGKSRKSLQLEVEDAML--LRQSPSAKPSGSKAGAKKGLGPGGEVLVRPEDADGLLHQLEASAKSEQRWARLASAGIGASLGVALLPSHDVWAGMVGGGLAAFLTTTPGIVGDATRMAGYSAVSVGKAASALEQKCAVLDKLRGTLWKKSEASGPFLRFEFP---FLASWRNAYGGEGFLHPGIRPAPPMRDAQYVEYLQEVKRWVEVEEQEVLQALRRKEDERVRDVMEXXXXXXXXXXXXXGLWQGXXXXXTKLKTLLVSSATEGGKEGRWEEPGGEGGMEDDLAFLKRF 574
The following BLAST results are available for this feature:
BLAST of NO04G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28506.17.600e-8853.46hypothetical protein Naga_100058g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL077nonsL077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009734NSK009734Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00520.1NO04G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668619gene_1834Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100058g9gene2085Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00520.1NO04G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00520 ID=NO04G00520|Name=NO04G00520|organism=Nannochloropsis oceanica|type=gene|length=2162bp
GGGCGGCTGGGGCAGGTGGACTCGTCGCTGATGACCAATGATGGCGTCAG
GCTGACAGGATAAATGCACGTGCCTCTTTGTGTGCATGCCTCACGCTGGC
CACCAAAGGGCTTTCCGGTGGCACTCTTATGGCCTTCTCATGCTCGGAAG
TGCCATTCTCACTGATCTGTTTCTTTCCTTTCCCTATTAGTACCATTACA
GCACAAAGCACCGAAGCTTCTCTGAGTGCTACCAGGATGGACTCGAGACT
ACCAAGAAGACCAAGATGCCCGAAACTGTGGCCTTGGGAAGGTGCTTCTT
CTCATTCATCTAAAAGAATAGCCGCTATCGCTTGTCTCGCCTTCCATGTC
GTGACTGCGGCTTGCAACTCCATAGCCTCCATTCGTCCCTTTCTCCTCCC
CACCCGAAAAGgtaagtctttctactttcctttccctatgcacttccgcg
caaccttttcgctcatgttcatgcatataatctcttctaaactcgaaaac
tagTGGGATTCTGTCCTGCCCCCTCTTCTTCCCTCCCGTGCATCTCGCCA
AGCCACCGCCTGCTATGGTGTCAGACCTCCTCCTCCTTCCCCTCCACCGG
CAGCAGAAGCGTCTCCAACAACATCAACAACGCAGTGAGGATGGCAATGG
AGGGAGATTCGTCACCGTTTCAATTTAGCCTCTTTGCATTTGGAAGGGGC
GACGGAGGGACAGTCAAAACGTCACCCGCCAGCGGCACAAAAAAGAATAG
GCAGCAGCAGCCACCCCAGAAAAAAGAGGAAGACAAGGGATGGTTCGTCT
TTTCTTTCCCTTTCTCCAGCATAAGTCCAGCGGAACAGCAAGAGATTTCT
AAGAAGGGGAAGAAGAGGAAGAAGAGGAAAGCGGAGGATGAGAAGAAAGG
TTGGTTCTCCCTTCTTTCTCTCCCTTGGAGTGGTGGCTTCGCCTCGTTCA
ATAGCGAATGGAAAGACCAACTCGCCCTCGCGAAGAAAATCAAGAAGCTG
GAGAAGGAGGTCGCTGACGACTACATACGGGGATCGAGAGCCAAGGCTGC
CCAGTACAGGTATGAGGCTTTGCGGACGCTGGAAGAGGTGCAGGGCGGTA
GGGAGGGAGGGCAGGGCGCGTTGGAGTTCGACCCTATCATAGCGGGGAAG
ACCATGAAGAGCCAACGGTTGGAAGTGAAGGATGCGAAGCTCCTCCTCCA
CCAGCAGCAACAACAGCAGCAGCAGGAGCTTCAACAGCCAGGGCAAAGAG
AGGAAAGCATGCCCCTGAAGCCCGAGGATCTAGACAGGATGCTACAGCAA
CTGGAGAGCGTGGTGAAAGACGAACAACAATGGGCCAGGCTCGCTTCTGC
CTGTGTCGGGGCCCTCCTCGGACTGCTCCTCATCCCTTCCCATAATTTTT
TTGGTGTGACGTTTCTGGCACTCTTCGTGACTTTCCTCACCACGACGCCG
GGGCTGGTAGGGGACGCGGCGAGGATGAGTGGGTATGGCCTCCTGTCGCT
CGCCAATGCCCTTGGTCAATTCGAGAAGAAATTTGCCGTGTTACGAAGGG
TACGTGAGGCCATGTGGGACATGGCCGAGGCCTCGATCCCGTTTAAACTT
GAATTTAAAGATGAAAATTCGTTGAAACACTGGCGGAATGCTTACAAAGG
AGAGGGTTTTCTCCATCCAGACATAAGGCCGGCGCCGCCGATGAGGGACG
CTCAGTATGTGGAGTACCTCAGGGAGGTGAAGAAGTGGGTGGAGGTGGAA
GAGAGAGAGGTGCTGAGGGCCCTCAGGAAGAAGGAGGATGAGCGGGCGAG
TGGGTTGAGGGAGAGGGAGGAGAGGAGGGAGAGGATGCAGAAGGTGTTGG
TTGGCTTGTGGGAGGGGAGTGCGACGGCGGCGACGATGGTGGGGGGGATG
GTGATGAGTAAGAGGGAGGGAGGGATGGGAGAGGTAGAGAAGGAGTTTAA
AGGGGAAGGAGGGATGGACGACGACGTAGCGTTTTTGAAGAGATTTGTGG
AGAGGGAACGGGGGTAGAAAGGATGACGACGAAGGAGGAAGGAGGGAGGG
GGGGGTTCTGTGACATACATTTATATAGCCGTTAGTAAATTTTCGTTGTG
CAGAGAGACGGTGAAAGGCAGTCTAGAAGAGAGACAAACCAAAGAGGAAG
AGAAGAGAAGGG
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protein sequence of NO04G00520.1

>NO04G00520.1-protein ID=NO04G00520.1-protein|Name=NO04G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MAFSCSEVPFSLICFFPFPISTITAQSTEASLSATRMDSRLPRRPRCPKL
WPWEGASSHSSKRIAAIACLAFHVVTAACNSIASIRPFLLPTRKVGFCPA
PSSSLPCISPSHRLLWCQTSSSFPSTGSRSVSNNINNAVRMAMEGDSSPF
QFSLFAFGRGDGGTVKTSPASGTKKNRQQQPPQKKEEDKGWFVFSFPFSS
ISPAEQQEISKKGKKRKKRKAEDEKKGWFSLLSLPWSGGFASFNSEWKDQ
LALAKKIKKLEKEVADDYIRGSRAKAAQYRYEALRTLEEVQGGREGGQGA
LEFDPIIAGKTMKSQRLEVKDAKLLLHQQQQQQQQELQQPGQREESMPLK
PEDLDRMLQQLESVVKDEQQWARLASACVGALLGLLLIPSHNFFGVTFLA
LFVTFLTTTPGLVGDAARMSGYGLLSLANALGQFEKKFAVLRRVREAMWD
MAEASIPFKLEFKDENSLKHWRNAYKGEGFLHPDIRPAPPMRDAQYVEYL
REVKKWVEVEEREVLRALRKKEDERASGLREREERRERMQKVLVGLWEGS
ATAATMVGGMVMSKREGGMGEVEKEFKGEGGMDDDVAFLKRFVERERG*
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Synonyms
Publications