NO04G00510, NO04G00510 (gene) Nannochloropsis oceanica

Overview
NameNO04G00510
Unique NameNO04G00510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr4:189956..191371 +

Link to JBrowse

Properties
Property NameValue
DescriptionMAGE protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:189956..191371 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037445MAGE
IPR002190MHD_dom
Homology
BLAST of NO04G00510 vs. NCBI_GenBank
Match: EWM28489.1 (MAGE protein [Nannochloropsis gaditana])

HSP 1 Score: 290.4 bits (742), Expect = 8.900e-75
Identity = 145/195 (74.36%), Postives = 165/195 (84.62%), Query Frame = 0
Query:  126 KASQHAVYFCQKQVDTTFSFSQADDGPVVNQRETQASQDEMRPIDEKSFQGLSHDQQKQAVSEAMRYILFKAARREPVHRVKLHDEVVKKYGKSLVRPVLKAAAEQLESTFGYTLVAPPAYRFPRALDQDTFYLITKFRSPSLSQSINAYGKDVGYRGFCMLVMSLVYCSSSKITERALFKQLMEAQDGLKMHAK 321
            KASQ   Y+CQ  V+T FSF+Q +DGPV+NQRE QASQ EMRP DEK FQGLS DQQK  VSEA+RYI FKAARREPVHR KLHDEVVKKYGK+LVRPVLKAAAEQLES FGYTLV PPAYRFPR  DQ+++YLIT  RS SLS+++NAYGKDV YRGFCMLVM LV+C+ +KI E+ LFKQL EAQDGL++ +K
Sbjct:  192 KASQDGNYYCQTPVETLFSFTQTEDGPVINQREAQASQCEMRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARREPVHRQKLHDEVVKKYGKALVRPVLKAAAEQLESIFGYTLVTPPAYRFPRDADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCAQNKIPEQVLFKQLQEAQDGLELVSK 386          
BLAST of NO04G00510 vs. NCBI_GenBank
Match: CBN75292.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.5 bits (249), Expect = 1.300e-17
Identity = 74/275 (26.91%), Postives = 140/275 (50.91%), Query Frame = 0
Query:  153 VVNQRETQASQDEMRPIDEKSFQGLSHDQQKQAVSEAMRYILFKAARREPVHRVKLHDEVV-KKYGKS-LVRPVLKAAAEQLESTFGYTLVAPPAYRFPRALDQDTFYLITKFRSPSLSQSINAYGKDVGYRGFCMLVMSLVYCSSSK-ITERALFKQLMEAQDGLKMHAKVGXXXXXXLWEGEGQEMILAGELEGVGDVGVALERMKKEQYLIREREQQEVGTGGRVRNEFYYRLGQRAFVEVGPRQILKFLAEVQNQDVDKAMMVEIETEEKR 425
            +V   +T + + ++   D+K    LS   +K  V + MR++L K    EP+ R ++ D V+ +KY K+ +++ +L  A E+L+   G+ +  P   +      +DTFY++    +    + +   GK    RG  +LV+S+V+CSS K + E  LFK         K+H  V        W G   +  +   ++G+GDV   L    K+ YL+++   +    GG   +  +Y +G R+ +E+G RQ+++ +A+V  Q +D + ++ +E +E +
Sbjct:    1 MVKSAKTPSKEVQIEEKDQKKGNELSDLAKKDLVKKMMRFLLMKGLNHEPLTRKEVMDNVLGEKYRKAGVLKFILNKADEKLQQGMGFKIKTPLPDK--PWFVKDTFYVVNVLNNEQHFKEV-LRGKGQAGRGLLVLVLSIVFCSSDKSVAENQLFK---------KLHDHVDKRVPEKAWNGNNPKNKVRVHVDGLGDVHEHLAMFAKQHYLLKKMVDKPTADGG-TESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPSDLLGLEEQESQ 262          
BLAST of NO04G00510 vs. NCBI_GenBank
Match: OQR84975.1 (hypothetical protein ACHHYP_12447 [Achlya hypogyna])

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-7
Identity = 66/253 (26.09%), Postives = 111/253 (43.87%), Query Frame = 0
Query:  177 LSHDQQKQAVSEAMRYILFKAARREPVHRVKLHDEVVKKYGKSLVRPVLKAAAEQLESTFGYTLVAPPAYRFPRALDQDTFYLITKFRSPSLSQSIN-AYGKDVGYRGFCMLVMSLVYCS-SSKITERALFKQLMEAQDGLKMHAKVGXXXXXXLWEGEGQEMILAGELEGVGDVGVALERMKKEQYLIREREQQEVGTGGRVRNEFYYRLGQRAFVEVGPRQILKFLAE-VQNQDVDKAMMVEIETEEKREQ 427
            LS        +  +R++L+KA+   PV    +  EV+    K + R +LK A+ +LE  FGY +VA        A  +D F +I      +    IN  YGK    RG  M++ + ++C+ S ++ E  L+KQL                          + +  A     +GD+   L+  + + YL  + E       G  +   +Y  G RAF EVG  QI+ FL++ + N+   + ++ E+  E + EQ
Sbjct:   93 LSKKTISDLTARLVRFLLYKASANLPVKFADIGKEVLTNEPK-VGRHILKLASVELERVFGYRVVAVDDIMPNGAGKKDVFLVINALEDQTHLLHINKCYGKT--SRGLLMMIFAFIWCAPSRRLVEEDLWKQLKLVD----------------------KSIATAPGKHPLGDIAQLLKAFEAQMYLASDSE-----IDGEAKRVKFYTYGPRAFAEVGKVQIVTFLSKLIHNRPPSQELLKELALEMQNEQ 315          
The following BLAST results are available for this feature:
BLAST of NO04G00510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28489.18.900e-7574.36MAGE protein [Nannochloropsis gaditana][more]
CBN75292.11.300e-1726.91conserved unknown protein [Ectocarpus siliculosus][more]
OQR84975.11.200e-726.09hypothetical protein ACHHYP_12447 [Achlya hypogyna... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL077nonsL077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009731NSK009731Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00510.1NO04G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|286404gene_1833Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100058g8gene2084Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00510.1NO04G00510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00510 ID=NO04G00510|Name=NO04G00510|organism=Nannochloropsis oceanica|type=gene|length=1416bp
AAACACAGGCATTAAGACTCGTACCGCACCAAGATGCCCGCACGCAAGCC
CGCTGCTTCCAAGCGTCGTGCGTCCCGTGCGGTCAAGGAGGAAGAGGAGG
AGGAGGCAGAGAAGGAGATGCCGACTCAACAAGCCTCAATAGCAGCCCCC
AAAAGCGAAGCGCCTTCCGATGAAGCGGAGGATGGAGAAGTGGGGGAGGA
AGAAGAGGAGGAAAAGGAAACTCAAGCTCCCCGTAGCAAACGTGGGCGGT
CCTCTGCGAGAGCCTCGACCACGTATGATGATGACGACGAGGAAGACGAG
GAGGAGGAAGACGAGGAGGAGGAAGACGAGGAGGGAGAGGAGGAGGGGCA
CGGCGCCCCACGGCGCCGGCGCAAGGCATCTTTTGCCCGTAAGAAGAGCT
ACACAGCGAAGGCTTCCCAGCACGCAGTTTATTTTTGCCAGAAGCAGGTG
GACACGACATTTTCCTTTTCCCAGGCTGATGACGGCCCGGTGGTGAACCA
ACGCGAGACCCAGGCGAGCCAGGACGAAATGCGCCCGATAGACGAGAAGA
GCTTCCAAGGCCTGAGCCATGATCAGCAGAAGCAGGCAGTGTCAGAGGCG
ATGCGCTACATTCTCTTCAAGGCGGCGCGGCGGGAGCCAGTGCATCGGGT
GAAGCTCCACGACGAGGTGGTGAAGAAGTATGGCAAGTCCCTCGTGCGAC
CCGTGCTCAAGGCCGCCGCCGAGCAGCTCGAGTCCACCTTTGGCTATACC
CTCGTTGCTCCTCCTGCCTATCGCTTTCCGCGGGCTTTGGACCAGGACAC
ATTCTACCTCATCACGAAATTCCGGTCGCCTTCGTTGAGTCAATCGATAA
ACGCGTACGGGAAGGACGTGGGGTATCGGGGTTTCTGCATGCTGGTCATG
AGCTTGGTCTATTGCTCTTCGTCCAAGATAACCGAGCGGGCCTTGTTCAA
GCAGTTGATGGAAGCACAGGACGGGTTGAAGATGCATGCGAAGGTCGGGG
GGGGAGGAGGAGGAGGATTATGGGAGGGGGAAGGACAGGAGATGATTCTT
GCAGGGGAGCTGGAGGGAGTGGGCGATGTCGGGGTTGCGCTGGAAAGGAT
GAAAAAGGAGCAGTACCTGATCCGGGAGAGAGAGCAGCAGGAGGTGGGGA
CAGGAGGGAGGGTGAGGAATGAGTTTTATTACCGGCTGGGGCAGCGGGCC
TTCGTGGAGGTGGGTCCTCGGCAAATTTTGAAATTTTTGGCGGAGGTCCA
GAATCAGGATGTTGACAAGGCGATGATGGTGGAGATTGAGACGGAGGAGA
AGAGGGAGCAGAGATAGGGATAGCGATAGGAAAAGAGGGAGGACGGGAAG
AAGGAGGGAGGAGGGAGGAGAGGAGGGAAGCAAAAATCGGAAAAAGGAAT
CAGATGGAAAAGTACA
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protein sequence of NO04G00510.1

>NO04G00510.1-protein ID=NO04G00510.1-protein|Name=NO04G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MPARKPAASKRRASRAVKEEEEEEAEKEMPTQQASIAAPKSEAPSDEAED
GEVGEEEEEEKETQAPRSKRGRSSARASTTYDDDDEEDEEEEDEEEEDEE
GEEEGHGAPRRRRKASFARKKSYTAKASQHAVYFCQKQVDTTFSFSQADD
GPVVNQRETQASQDEMRPIDEKSFQGLSHDQQKQAVSEAMRYILFKAARR
EPVHRVKLHDEVVKKYGKSLVRPVLKAAAEQLESTFGYTLVAPPAYRFPR
ALDQDTFYLITKFRSPSLSQSINAYGKDVGYRGFCMLVMSLVYCSSSKIT
ERALFKQLMEAQDGLKMHAKVGGGGGGGLWEGEGQEMILAGELEGVGDVG
VALERMKKEQYLIREREQQEVGTGGRVRNEFYYRLGQRAFVEVGPRQILK
FLAEVQNQDVDKAMMVEIETEEKREQR*
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Synonyms
Publications