NO04G00460, NO04G00460 (gene) Nannochloropsis oceanica

Overview
NameNO04G00460
Unique NameNO04G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length888
Alignment locationchr4:175137..176024 +

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Properties
Property NameValue
DescriptionPhosphoglycerate bisphosphoglycerate mutase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:175137..176024 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029033His_PPase_superfam
IPR013078His_Pase_superF_clade-1
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO04G00460 vs. NCBI_GenBank
Match: EWM28486.1 (phosphoglycerate bisphosphoglycerate mutase family protein [Nannochloropsis gaditana])

HSP 1 Score: 398.3 bits (1022), Expect = 2.100e-107
Identity = 186/256 (72.66%), Postives = 213/256 (83.20%), Query Frame = 0
Query:   28 AYIDVVICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCGALHLRLALPTSPAETAEMVQAGGYTLPV----PVVDAEEVDDGDTSMAQYYRRVHPFEWEPELH 280
            +YIDV++CRHGETCHNAEGRCQGMEDVSRLT++GE+QALELGRALA R QRFDRIFISPLARARHTFD MEK+WR LG+  YP+CAPTFVPEIQEICLYDWQG LR+DLQ  +P+EF NWMN+PA F +G H+PVRELW RA+R WE IL+QS+P ERVL+VAHSGINQA+CF ALG+ E MYRRLNFPNCGAL LRLALPTS AE   +VQ GGYTLPV     +  A E  + D  M ++YR VHP +WEPE H
Sbjct:   52 SYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGALRLRLALPTSLAEATALVQVGGYTLPVTDSETMFAANECGEEDRPM-RHYRPVHPNDWEPEEH 306          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: XP_005854836.1 (phosphoglycerate bisphosphoglycerate mutase family protein, partial [Nannochloropsis gaditana CCMP526] >EKU21524.1 phosphoglycerate bisphosphoglycerate mutase family protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 280.0 bits (715), Expect = 8.400e-72
Identity = 124/159 (77.99%), Postives = 142/159 (89.31%), Query Frame = 0
Query:   28 AYIDVVICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERV 187
            +YIDV++CRHGETCHNAEGRCQGMEDVSRLT++GE+QALELGRALA R QRFDRIFISPLARARHTFD MEK+WR LG+  YP+CAPTFVPEIQEICLYDWQG LR+DLQ  +P+EF NWMN+PA F +G H+PVRELW RA+R WE IL+QS+P ERV
Sbjct:   57 SYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERV 215          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: XP_005825982.1 (hypothetical protein GUITHDRAFT_76658 [Guillardia theta CCMP2712] >EKX39002.1 hypothetical protein GUITHDRAFT_76658 [Guillardia theta CCMP2712])

HSP 1 Score: 144.1 bits (362), Expect = 7.200e-31
Identity = 77/187 (41.18%), Postives = 113/187 (60.43%), Query Frame = 0
Query:   36 RHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRK-DLQVLYPDEFENWMNQ-PATFCIGQ-HYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCG 220
            RHG+T +NAEGR QG  D SRLT +GEAQA  +GR L++     D +F+SPL RAR T      +  A G       +   + +++E+ L++W+G L+K +++ +YPD +  W  + P  F +    YP+R+LW RA + WEV+   +   +  L+VAH+GINQAL    LG  E  +R+L FPNCG
Sbjct:   21 RHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGRILSD--IPIDSVFVSPLTRARMTL-----ELAAAGSGRNLSDSAMVLDDLREVDLHEWEGMLKKQEIKEMYPDIYSLWRGENPREFKLDSGKYPIRDLWKRAGKVWEVLRRDAANGKTSLIVAHNGINQALLCTTLGLSEEYFRKLEFPNCG 200          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: ABF73003.1 (plastid phosphoglycerate mutase protein precursor, partial [Karenia brevis])

HSP 1 Score: 142.5 bits (358), Expect = 2.100e-30
Identity = 77/196 (39.29%), Postives = 112/196 (57.14%), Query Frame = 0
Query:   33 VICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQ-RFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFV--PEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERV----LVVAHSGINQALCFAALGHQEPMYRRLNFPNCGAL 222
            +I RHGET  NA+G  QG  D+SRLT +G+AQA + G  LA       +++F+SPL RA  T +        L  ++ P   P  +  PE++EI LY W+G+ ++DL+   PD ++ W +    F +  HYP+ ELW RAK  W  I +       +    L+V H+GI QAL F+A+G     +R+L+FPN GAL
Sbjct:  100 LILRHGETNFNAKGILQGSSDISRLTEKGQAQANKAGMELATLSDLPIEQVFVSPLTRATSTLE--------LVAQSLPCSLPEAITLPELREIDLYSWEGKQKEDLKREMPDTYQAWKSADPDFVVDGHYPLVELWQRAKEAWAAIRASEDGKRDIDGVTLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGAL 287          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: CBN75661.1 (plastid phosphoglycerate mutase protein precursor [Ectocarpus siliculosus])

HSP 1 Score: 141.7 bits (356), Expect = 3.600e-30
Identity = 82/218 (37.61%), Postives = 121/218 (55.50%), Query Frame = 0
Query:   34 ICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERG--QRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILS----QSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCGALHLRLALPTSPAETAEMV--QAGGY 244
            + RHG+T  NA GR QG  D S LT +G +QALE G+ LA          + +SP+ RA+ T + + ++ R              VP+I+EI L++WQGQL++D+    P+++ +W+  P+ F     YP R+LW RA   W+ I S    Q +P  R LVVAH+ INQAL + ALG     +R+L++PNC  L L+     + AE    V  +A G+
Sbjct:   86 LLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETV-EIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQP--RTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGF 300          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: ACR34191.1 (unknown [Zea mays])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 80/189 (42.33%), Postives = 104/189 (55.03%), Query Frame = 0
Query:   32 VVICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCGA 221
            VV+ RHG++  NAEGR QG  D S LT +GEAQA    + LA     FD  F SPLAR+R T    E  W+           P   P+++EI LY +QG L+++ +  Y   +  W    A F I  HYPV+ELW RA+  WE IL+     + VLVVAH+ +NQAL   +LG     +R L   NCGA
Sbjct:   39 VVLVRHGQSTWNAEGRIQGSSDASVLTPKGEAQAETCRQMLA--SDSFDACFTSPLARSRRT---AEIIWQGRXXXXXDGLIPD--PDLREIDLYSFQGLLKREGRERYGPLYRQWQKNAAEFSIDGHYPVQELWDRARSCWERILAHRG--KSVLVVAHNAVNQALVATSLGLGAEHFRILLQSNCGA 218          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: NP_001307049.1 (uncharacterized protein LOC100274536 [Zea mays])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 80/189 (42.33%), Postives = 104/189 (55.03%), Query Frame = 0
Query:   32 VVICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCGA 221
            VV+ RHG++  NAEGR QG  D S LT +GEAQA    + LA     FD  F SPLAR+R T    E  W+           P   P+++EI LY +QG L+++ +  Y   +  W    A F I  HYPV+ELW RA+  WE IL+     + VLVVAH+ +NQAL   +LG     +R L   NCGA
Sbjct:   39 VVLVRHGQSTWNAEGRIQGSSDASVLTPKGEAQAETCRQMLA--SDSFDACFTSPLARSRRT---AEIIWQGRXXXXXDGLIPD--PDLREIDLYSFQGLLKREGRERYGPLYRQWQKNAAEFSIDGHYPVQELWDRARSCWERILAHRG--KSVLVVAHNAVNQALVATSLGLGAEHFRILLQSNCGA 218          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: AQK57374.1 (putative 2-carboxy-D-arabinitol-1-phosphatase [Zea mays])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 80/189 (42.33%), Postives = 104/189 (55.03%), Query Frame = 0
Query:   32 VVICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCGA 221
            VV+ RHG++  NAEGR QG  D S LT +GEAQA    + LA     FD  F SPLAR+R T    E  W+           P   P+++EI LY +QG L+++ +  Y   +  W    A F I  HYPV+ELW RA+  WE IL+     + VLVVAH+ +NQAL   +LG     +R L   NCGA
Sbjct:   39 VVLVRHGQSTWNAEGRIQGSSDASVLTPKGEAQAETCRQMLA--SDSFDACFTSPLARSRRT---AEIIWQGRXXXXXDGLIPD--PDLREIDLYSFQGLLKREGRERYGPLYRQWQKNAAEFSIDGHYPVQELWDRARSCWERILAHRG--KSVLVVAHNAVNQALVATSLGLGAEHFRILLQSNCGA 218          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: AQK57377.1 (putative 2-carboxy-D-arabinitol-1-phosphatase [Zea mays])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 80/189 (42.33%), Postives = 104/189 (55.03%), Query Frame = 0
Query:   32 VVICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCGA 221
            VV+ RHG++  NAEGR QG  D S LT +GEAQA    + LA     FD  F SPLAR+R T    E  W+           P   P+++EI LY +QG L+++ +  Y   +  W    A F I  HYPV+ELW RA+  WE IL+     + VLVVAH+ +NQAL   +LG     +R L   NCGA
Sbjct:   39 VVLVRHGQSTWNAEGRIQGSSDASVLTPKGEAQAETCRQMLA--SDSFDACFTSPLARSRRT---AEIIWQGRXXXXXDGLIPD--PDLREIDLYSFQGLLKREGRERYGPLYRQWQKNAAEFSIDGHYPVQELWDRARSCWERILAHRG--KSVLVVAHNAVNQALVATSLGLGAEHFRILLQSNCGA 218          
BLAST of NO04G00460 vs. NCBI_GenBank
Match: AQK57372.1 (putative 2-carboxy-D-arabinitol-1-phosphatase [Zea mays])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 80/189 (42.33%), Postives = 104/189 (55.03%), Query Frame = 0
Query:   32 VVICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCGA 221
            VV+ RHG++  NAEGR QG  D S LT +GEAQA    + LA     FD  F SPLAR+R T    E  W+           P   P+++EI LY +QG L+++ +  Y   +  W    A F I  HYPV+ELW RA+  WE IL+     + VLVVAH+ +NQAL   +LG     +R L   NCGA
Sbjct:   39 VVLVRHGQSTWNAEGRIQGSSDASVLTPKGEAQAETCRQMLA--SDSFDACFTSPLARSRRT---AEIIWQGRXXXXXDGLIPD--PDLREIDLYSFQGLLKREGRERYGPLYRQWQKNAAEFSIDGHYPVQELWDRARSCWERILAHRG--KSVLVVAHNAVNQALVATSLGLGAEHFRILLQSNCGA 218          
The following BLAST results are available for this feature:
BLAST of NO04G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28486.12.100e-10772.66phosphoglycerate bisphosphoglycerate mutase family... [more]
XP_005854836.18.400e-7277.99phosphoglycerate bisphosphoglycerate mutase family... [more]
XP_005825982.17.200e-3141.18hypothetical protein GUITHDRAFT_76658 [Guillardia ... [more]
ABF73003.12.100e-3039.29plastid phosphoglycerate mutase protein precursor,... [more]
CBN75661.13.600e-3037.61plastid phosphoglycerate mutase protein precursor ... [more]
ACR34191.11.700e-2742.33unknown [Zea mays][more]
NP_001307049.11.700e-2742.33uncharacterized protein LOC100274536 [Zea mays][more]
AQK57374.11.700e-2742.33putative 2-carboxy-D-arabinitol-1-phosphatase [Zea... [more]
AQK57377.11.700e-2742.33putative 2-carboxy-D-arabinitol-1-phosphatase [Zea... [more]
AQK57372.11.700e-2742.33putative 2-carboxy-D-arabinitol-1-phosphatase [Zea... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL077nonsL077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009725NSK009725Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00460.1NO04G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578076gene_1827Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100058g4gene2080Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00460.1NO04G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00460 ID=NO04G00460|Name=NO04G00460|organism=Nannochloropsis oceanica|type=gene|length=888bp
ATGACTGCCGCTACGACCTTGTCGCCGCAGGCTGATAGCGCTTCGCCCGC
TTCGACTACCGCTACCACTACTTCGAAGACAGCGTATATCGACGTCGTCA
TATGTCGACACGGAGAGACCTGCCACAATGCGGAAGGACGCTGCCAGGGC
ATGGAGGACGTCTCGCGATTGACAGCGCAAGGTGAGGCGCAAGCGCTGGA
ATTGGGCCGGGCCCTGGCGGAACGAGGACAGCGTTTCGACCGAATCTTCA
TCTCGCCTCTTGCCCGTGCCCGGCACACATTTGATCACATGGAGAAGCAA
TGGCGGGCGCTTGGCTTCAGAGCCTATCCCAGATGCGCGCCGACCTTTGT
GCCCGAGATCCAAGAGATTTGTCTGTACGACTGGCAAGGGCAGTTGCGCA
AGGACCTGCAAGTGCTTTACCCGGACGAGTTTGAGAATTGGATGAATCAG
CCTGCAACGTTCTGTATCGGGCAGCACTATCCAGTTCGCGAGCTGTGGAC
GCGGGCCAAGCGGGGATGGGAGGTGATCTTGTCGCAGTCCAAACCGTTCG
AGAGAGTGCTGGTCGTGGCACACAGCGGTATCAATCAAGCACTGTGCTTT
GCGGCTTTAGGTCACCAGGAGCCGATGTATAGACGCTTAAATTTCCCGAA
CTGTGGTGCCTTGCATCTGCGCTTGGCCTTGCCCACGTCGCCCGCAGAGA
CAGCAGAAATGGTGCAGGCGGGAGGGTACACCTTGCCCGTGCCTGTAGTG
GATGCAGAAGAAGTTGATGATGGCGACACCTCTATGGCCCAGTATTATCG
ACGAGTCCATCCATTTGAATGGGAGCCAGAATTGCACTCTCGGCTAGTAG
TGGGTGCCGTCATTAGTAGGGAAGGCGCCAAGGGATGA
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protein sequence of NO04G00460.1

>NO04G00460.1-protein ID=NO04G00460.1-protein|Name=NO04G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MTAATTLSPQADSASPASTTATTTSKTAYIDVVICRHGETCHNAEGRCQG
MEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQ
WRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQ
PATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCF
AALGHQEPMYRRLNFPNCGALHLRLALPTSPAETAEMVQAGGYTLPVPVV
DAEEVDDGDTSMAQYYRRVHPFEWEPELHSRLVVGAVISREGAKG*
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Synonyms
Publications