NO04G00460.1, NO04G00460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00460.1
Unique NameNO04G00460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length888
Alignment locationchr4:175137..176024 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:175137..176024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00460.1 vs.
Match: EWM28486.1 (phosphoglycerate bisphosphoglycerate mutase family protein [Nannochloropsis gaditana])

HSP 1 Score: 397.9 bits (1021), Expect = 2.800e-107
Identity = 187/259 (72.20%), Postives = 214/259 (82.63%), Query Frame = 0 
Query:   25 SKTAYIDVVICRHGETCHNAEGRCQGMEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQWRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQPATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCFAALGHQEPMYRRLNFPNCGALHLRLALPTSPAETAEMVQAGGYTLPV----PVVDAEEVDDGDTSMAQYYRRVHPFEWEPELH 280
            S  +YIDV++CRHGETCHNAEGRCQGMEDVSRLT++GE+QALELGRALA R QRFDRIFISPLARARHTFD MEK+WR LG+  YP+CAPTFVPEIQEICLYDWQG LR+DLQ  +P+EF NWMN+PA F +G H+PVRELW RA+R WE IL+QS+P ERVL+VAHSGINQA+CF ALG+ E MYRRLNFPNCGAL LRLALPTS AE   +VQ GGYTLPV     +  A E  + D  M ++YR VHP +WEPE H
Sbjct:   49 SAFSYIDVILCRHGETCHNAEGRCQGMEDVSRLTSKGESQALELGRALAARKQRFDRIFISPLARARHTFDLMEKEWRRLGWTDYPKCAPTFVPEIQEICLYDWQGHLRQDLQAQFPEEFHNWMNEPAIFRVGDHFPVRELWMRARRSWEQILTQSQPGERVLIVAHSGINQAMCFTALGYGETMYRRLNFPNCGALRLRLALPTSLAEATALVQVGGYTLPVTDSETMFAANECGEEDRPM-RHYRPVHPNDWEPEEH 306
The following BLAST results are available for this feature:
BLAST of NO04G00460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28486.12.800e-10772.20phosphoglycerate bisphosphoglycerate mutase family... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00460NO04G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00460.1NO04G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00460.1.cds1NO04G00460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00460.1 ID=NO04G00460.1|Name=NO04G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=888bp
ATGACTGCCGCTACGACCTTGTCGCCGCAGGCTGATAGCGCTTCGCCCGC
TTCGACTACCGCTACCACTACTTCGAAGACAGCGTATATCGACGTCGTCA
TATGTCGACACGGAGAGACCTGCCACAATGCGGAAGGACGCTGCCAGGGC
ATGGAGGACGTCTCGCGATTGACAGCGCAAGGTGAGGCGCAAGCGCTGGA
ATTGGGCCGGGCCCTGGCGGAACGAGGACAGCGTTTCGACCGAATCTTCA
TCTCGCCTCTTGCCCGTGCCCGGCACACATTTGATCACATGGAGAAGCAA
TGGCGGGCGCTTGGCTTCAGAGCCTATCCCAGATGCGCGCCGACCTTTGT
GCCCGAGATCCAAGAGATTTGTCTGTACGACTGGCAAGGGCAGTTGCGCA
AGGACCTGCAAGTGCTTTACCCGGACGAGTTTGAGAATTGGATGAATCAG
CCTGCAACGTTCTGTATCGGGCAGCACTATCCAGTTCGCGAGCTGTGGAC
GCGGGCCAAGCGGGGATGGGAGGTGATCTTGTCGCAGTCCAAACCGTTCG
AGAGAGTGCTGGTCGTGGCACACAGCGGTATCAATCAAGCACTGTGCTTT
GCGGCTTTAGGTCACCAGGAGCCGATGTATAGACGCTTAAATTTCCCGAA
CTGTGGTGCCTTGCATCTGCGCTTGGCCTTGCCCACGTCGCCCGCAGAGA
CAGCAGAAATGGTGCAGGCGGGAGGGTACACCTTGCCCGTGCCTGTAGTG
GATGCAGAAGAAGTTGATGATGGCGACACCTCTATGGCCCAGTATTATCG
ACGAGTCCATCCATTTGAATGGGAGCCAGAATTGCACTCTCGGCTAGTAG
TGGGTGCCGTCATTAGTAGGGAAGGCGCCAAGGGATGA
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protein sequence of NO04G00460.1

>NO04G00460.1-protein ID=NO04G00460.1-protein|Name=NO04G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MTAATTLSPQADSASPASTTATTTSKTAYIDVVICRHGETCHNAEGRCQG
MEDVSRLTAQGEAQALELGRALAERGQRFDRIFISPLARARHTFDHMEKQ
WRALGFRAYPRCAPTFVPEIQEICLYDWQGQLRKDLQVLYPDEFENWMNQ
PATFCIGQHYPVRELWTRAKRGWEVILSQSKPFERVLVVAHSGINQALCF
AALGHQEPMYRRLNFPNCGALHLRLALPTSPAETAEMVQAGGYTLPVPVV
DAEEVDDGDTSMAQYYRRVHPFEWEPELHSRLVVGAVISREGAKG*
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mRNA from alignment at chr4:175137..176024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00460.1 ID=NO04G00460.1|Name=NO04G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=888bp|location=Sequence derived from alignment at chr4:175137..176024+ (Nannochloropsis oceanica)
ATGACTGCCGCTACGACCTTGTCGCCGCAGGCTGATAGCGCTTCGCCCGC
TTCGACTACCGCTACCACTACTTCGAAGACAGCGTATATCGACGTCGTCA
TATGTCGACACGGAGAGACCTGCCACAATGCGGAAGGACGCTGCCAGGGC
ATGGAGGACGTCTCGCGATTGACAGCGCAAGGTGAGGCGCAAGCGCTGGA
ATTGGGCCGGGCCCTGGCGGAACGAGGACAGCGTTTCGACCGAATCTTCA
TCTCGCCTCTTGCCCGTGCCCGGCACACATTTGATCACATGGAGAAGCAA
TGGCGGGCGCTTGGCTTCAGAGCCTATCCCAGATGCGCGCCGACCTTTGT
GCCCGAGATCCAAGAGATTTGTCTGTACGACTGGCAAGGGCAGTTGCGCA
AGGACCTGCAAGTGCTTTACCCGGACGAGTTTGAGAATTGGATGAATCAG
CCTGCAACGTTCTGTATCGGGCAGCACTATCCAGTTCGCGAGCTGTGGAC
GCGGGCCAAGCGGGGATGGGAGGTGATCTTGTCGCAGTCCAAACCGTTCG
AGAGAGTGCTGGTCGTGGCACACAGCGGTATCAATCAAGCACTGTGCTTT
GCGGCTTTAGGTCACCAGGAGCCGATGTATAGACGCTTAAATTTCCCGAA
CTGTGGTGCCTTGCATCTGCGCTTGGCCTTGCCCACGTCGCCCGCAGAGA
CAGCAGAAATGGTGCAGGCGGGAGGGTACACCTTGCCCGTGCCTGTAGTG
GATGCAGAAGAAGTTGATGATGGCGACACCTCTATGGCCCAGTATTATCG
ACGAGTCCATCCATTTGAATGGGAGCCAGAATTGCACTCTCGGCTAGTAG
TGGGTGCCGTCATTAGTAGGGAAGGCGCCAAGGGATGA
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Coding sequence (CDS) from alignment at chr4:175137..176024+

>NO04G00460.1 ID=NO04G00460.1|Name=NO04G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr4:175137..176024+ (Nannochloropsis oceanica)
ATGACTGCCGCTACGACCTTGTCGCCGCAGGCTGATAGCGCTTCGCCCGC
TTCGACTACCGCTACCACTACTTCGAAGACAGCGTATATCGACGTCGTCA
TATGTCGACACGGAGAGACCTGCCACAATGCGGAAGGACGCTGCCAGGGC
ATGGAGGACGTCTCGCGATTGACAGCGCAAGGTGAGGCGCAAGCGCTGGA
ATTGGGCCGGGCCCTGGCGGAACGAGGACAGCGTTTCGACCGAATCTTCA
TCTCGCCTCTTGCCCGTGCCCGGCACACATTTGATCACATGGAGAAGCAA
TGGCGGGCGCTTGGCTTCAGAGCCTATCCCAGATGCGCGCCGACCTTTGT
GCCCGAGATCCAAGAGATTTGTCTGTACGACTGGCAAGGGCAGTTGCGCA
AGGACCTGCAAGTGCTTTACCCGGACGAGTTTGAGAATTGGATGAATCAG
CCTGCAACGTTCTGTATCGGGCAGCACTATCCAGTTCGCGAGCTGTGGAC
GCGGGCCAAGCGGGGATGGGAGGTGATCTTGTCGCAGTCCAAACCGTTCG
AGAGAGTGCTGGTCGTGGCACACAGCGGTATCAATCAAGCACTGTGCTTT
GCGGCTTTAGGTCACCAGGAGCCGATGTATAGACGCTTAAATTTCCCGAA
CTGTGGTGCCTTGCATCTGCGCTTGGCCTTGCCCACGTCGCCCGCAGAGA
CAGCAGAAATGGTGCAGGCGGGAGGGTACACCTTGCCCGTGCCTGTAGTG
GATGCAGAAGAAGTTGATGATGGCGACACCTCTATGGCCCAGTATTATCG
ACGAGTCCATCCATTTGAATGGGAGCCAGAATTGCACTCTCGGCTAGTAG
TGGGTGCCGTCATTAGTAGGGAAGGCGCCAAGGGATGA
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Synonyms
Publications