NO04G00310, NO04G00310 (gene) Nannochloropsis oceanica

Overview
NameNO04G00310
Unique NameNO04G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr4:138041..139246 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:138041..139246 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G00310 vs. NCBI_GenBank
Match: EWM28437.1 (hypothetical protein Naga_102176g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 8.900e-36
Identity = 80/114 (70.18%), Postives = 89/114 (78.07%), Query Frame = 0 
Query:    1 MGPTDAFILARRCPRIFLKDYHRNLLPKGNWLARALGPPLTLPLLLRDSPQVFFYSSSSLQSKVQRLRRVLPPALDVLAMMRAFPGIACMDVEHNVRLKVVFLAGLFPKGGAEG 115
            +GP DA  LARR PRIFLKD+ RNL PKG WLA ALG P+TLP LLR SPQVFFYSSSSLQ K  RLRR LPP+LD+L M+R FPG+ACMDVE NV LK+ +L  LFP  G EG
Sbjct:   35 LGPADALHLARRYPRIFLKDFARNLTPKGQWLAGALGDPVTLPSLLRTSPQVFFYSSSSLQIKAARLRRALPPSLDLLRMLRTFPGLACMDVEKNVLLKIRYLMALFP--GREG 146
The following BLAST results are available for this feature:
BLAST of NO04G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28437.18.900e-3670.18hypothetical protein Naga_102176g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00310.1NO04G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|285662gene_1813Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102176g1gene2146Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00310.1NO04G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00310 ID=NO04G00310|Name=NO04G00310|organism=Nannochloropsis oceanica|type=gene|length=1206bp
ATGGGCCCCACAGATGCGTTCATTCTCGCCCGTCGCTGCCCCCGCATATT
CCTCAAAGACTACCATCGGAACCTCCTCCCCAAGGGgtaaggagggaagg
agggagagagggagggaggggatggagggagaattgatgatgtcaaacgc
atactggtgtctaactcatcatccaccactccttttctccctcccccctc
cccccctccctccctctctttcttcagTAATTGGCTCGCCCGTGCCCTGG
GCCCCCCCCTCACCCTCCCCCTCCTCCTCCGTGACTCCCCGCAGGTCTTC
TTCTACTCCTCCTCCTCCCTCCAAAGCAAGGTCCAGCGTCTCCGTCGCGT
CCTTCCTCCCGCCCTGGACGTGCTGGCCATGATGCGTGCCTTCCCCGGCA
TTGCCTGCATGGACGTCGAGCACAACGTACGGTTGAAGGTCGTCTTTCTG
GCGGGGCTGTTCCCGAAGGGCGGGGCAGAGGGGGCGGTAGGAGGGGAGGG
AGGGGGGAAGGACGACATGTATCGGTTGATGGAAAAGGACCCTCGAGTGT
TGATCCATGGATTTGGGCGGATTTCGAGGGCTGAGTACGTTGTGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGAGAGGGGTGACGCCGGCGGAGGCCTT
GAGGGCAGTGGCCATGACATGGCCGGAGCTGCAAGAGGCTTACCCGAGGT
ATGTACATATGTTGATGACTCTGAAGGAGGAGGGGGAGGGGGAGGAGGAC
GGAGGGAGGGAATGGGAGGGGAATAGAATGGCGGAGGAGAAGGAGGAAGA
GGAAGAAGAGGAGGAAGGAGTTGGAGGACGAGGAGGGGATCTGAGTGGTG
GTGATGGTCGTCATCCCTTGTTGTCCCTGCTCGAGGCGCAGAGGGGGCAC
ACACTCAAGGAACGCTTGGCCCATGAGATCCCGGCATTGGTGGACGAGGG
AGGGCAGGAGGAAGAGGGGCAGCTGCTGCCCGGCATGAAGGAAGTGCTGT
CGAGAGGAGGCGGAAGACTAGGAGGAGGAGGAGGAAGAAGGGGGGGGGGA
GAGGGACGTAAGACAGGAGAGCTGGCAGCAAGGGATTTCCTTGTCGAGGA
CGAGGACGAGGACAGGAAAGCTGTAGTTGTGAAGACTCAGGCAGGGGGAG
GATGGGTGAGGAAGACCCCCCGCTCTCCTCCCCGATTTCCCCCAAAGGCT
TCTTGA
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protein sequence of NO04G00310.1

>NO04G00310.1-protein ID=NO04G00310.1-protein|Name=NO04G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MGPTDAFILARRCPRIFLKDYHRNLLPKGNWLARALGPPLTLPLLLRDSP
QVFFYSSSSLQSKVQRLRRVLPPALDVLAMMRAFPGIACMDVEHNVRLKV
VFLAGLFPKGGAEGAVGGEGGGKDDMYRLMEKDPRVLIHGFGRISRAEYV
VREGGREGGRERGVTPAEALRAVAMTWPELQEAYPRYVHMLMTLKEEGEG
EEDGGREWEGNRMAEEKEEEEEEEEGVGGRGGDLSGGDGRHPLLSLLEAQ
RGHTLKERLAHEIPALVDEGGQEEEGQLLPGMKEVLSRGGGRLGGGGGRR
GGGEGRKTGELAARDFLVEDEDEDRKAVVVKTQAGGGWVRKTPRSPPRFP
PKAS*
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Synonyms
Publications