NO04G00270, NO04G00270 (gene) Nannochloropsis oceanica

Overview
NameNO04G00270
Unique NameNO04G00270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1372
Alignment locationchr4:119557..120928 +

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:119557..120928 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: EWM28429.1 (peptidyl-prolyl cis-trans isomerase ppi1 [Nannochloropsis gaditana])

HSP 1 Score: 335.1 bits (858), Expect = 1.200e-88
Identity = 153/162 (94.44%), Postives = 160/162 (98.77%), Query Frame = 0 
Query:    1 MSWTHVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLTGPPV 163
            MSWTHVRFETSVGNFT+ELYY+HAPRTCHNFAELAR+GYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAG++SMANAGPNTNGSQFFLTL PTPWLDGKHTIFGR+SHGMPIVQKLGLVK G+GDRPLTDVRVFKATPLTGPPV
Sbjct:   38 MSWTHVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLTGPPV 199
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BLAST of NO04G00270 vs. NCBI_GenBank
Match: GAX93498.1 (peptidyl-prolyl cis-trans isomerase-like 1 [Pythium insidiosum])

HSP 1 Score: 264.6 bits (675), Expect = 2.100e-67
Identity = 118/155 (76.13%), Postives = 139/155 (89.68%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLT 159
            THV FET+VG+FT+ELYY+HAPRTC N AELAR GYYN TIFHRIIKDFMIQGGDPTGTGRGGES++GGKF+DEI++ LKHTGAG++SMANAGPNTNGSQFF+TLAPTPWLDGKHTIFGR+S GM +VQ++GLV  G  DRP  ++R+ +A P+T
Sbjct:    8 THVVFETTVGDFTVELYYEHAPRTCFNLAELARRGYYNNTIFHRIIKDFMIQGGDPTGTGRGGESVFGGKFDDEISKALKHTGAGVVSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRISSGMRVVQRMGLVPTGANDRPRDEIRIKRAYPVT 162
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_012198039.1 (peptidyl-prolyl cis-trans isomerase-like 1 [Saprolegnia parasitica CBS 223.65] >KDO31444.1 peptidyl-prolyl cis-trans isomerase-like 1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 263.5 bits (672), Expect = 4.600e-67
Identity = 117/152 (76.97%), Postives = 136/152 (89.47%), Query Frame = 0 
Query:    5 HVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATP 157
            +V FET++G FT+ELY QHAPRTC N  ELAR GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEI+RDLKHTGAGILSMANAGPNTNGSQFF+TLAPTPWLDGKHT+FGR+S GM +++++GLV+ G  D+P  D+R+ +ATP
Sbjct:    4 YVDFETTMGTFTMELYTQHAPRTCKNITELARRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEISRDLKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTVFGRISEGMGVIKRMGLVQTGANDKPRDDIRIVRATP 155
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_008618739.1 (peptidyl-prolyl cis-trans isomerase-like 1 [Saprolegnia diclina VS20] >EQC27809.1 peptidyl-prolyl cis-trans isomerase-like 1 [Saprolegnia diclina VS20])

HSP 1 Score: 263.1 bits (671), Expect = 6.000e-67
Identity = 116/152 (76.32%), Postives = 136/152 (89.47%), Query Frame = 0 
Query:    5 HVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATP 157
            +V FET++G FT+ELY QHAPRTC N  ELAR GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEI+RDLKHTGAG+LSMANAGPNTNGSQFF+TLAPTPWLDGKHT+FGR+S GM +++++GLV+ G  D+P  D+R+ +ATP
Sbjct:    4 YVDFETTMGTFTMELYTQHAPRTCKNITELARRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEISRDLKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTVFGRISEGMGVIKRMGLVQTGANDKPRDDIRIVRATP 155
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: OQS07391.1 (peptidyl-prolyl cis-trans isomerase ppi1 [Thraustotheca clavata])

HSP 1 Score: 262.3 bits (669), Expect = 1.000e-66
Identity = 115/153 (75.16%), Postives = 138/153 (90.20%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATP 157
            T+V FET++G+FT+ELY QHAPRTC N AELA+ GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEI+R+LKHTGAG+LSMANAGPNTNGSQFF+TLAPTPWLDGKHT+FGR+S GM +++++GLV+ G  D+P  D+R+ +A P
Sbjct:    3 TYVDFETTMGSFTMELYTQHAPRTCKNIAELAKRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEISRELKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTVFGRISEGMSVIKRMGLVQTGANDKPRDDIRILRAYP 155
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: OQR98418.1 (peptidyl-prolyl cis-trans isomerase ppi1 [Achlya hypogyna])

HSP 1 Score: 261.5 bits (667), Expect = 1.700e-66
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKA 155
            T+V FET++G FT+ELY QHAPRTC N +ELAR GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEI+RDLKHTGAGILSMANAGPNTNGSQFF+TLAPTPWLDGKHT+FGR+S GM +++++GLV+ G  D+P  D+R+ +A
Sbjct:    3 TYVDFETTMGTFTMELYTQHAPRTCKNISELARRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEISRDLKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTVFGRISEGMGVIKRMGLVQTGANDKPRDDIRIVRA 153
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: OWZ13923.1 (Peptidyl-prolyl cis-trans isomerase ppi1 [Phytophthora megakarya])

HSP 1 Score: 260.0 bits (663), Expect = 5.100e-66
Identity = 115/155 (74.19%), Postives = 136/155 (87.74%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLT 159
            THV FET+VG FT+ELY +HAPRTC N AELAR GYYN TIFHR+IKDFMIQGGDPTGTGRGGESIYG KF+DEIT++LKHTGAG+LSMAN+GPNTNGSQFF+TLAPTPWLDGKHT+FGR+S GM ++Q++GLV  G  DRP  ++ V +A P++
Sbjct:   11 THVVFETTVGEFTMELYTEHAPRTCWNIAELARRGYYNNTIFHRVIKDFMIQGGDPTGTGRGGESIYGAKFDDEITKELKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTVFGRISAGMKVIQRMGLVPTGANDRPREEIHVKRAYPIS 165
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_001702337.1 (peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Chlamydomonas reinhardtii] >PNW75033.1 hypothetical protein CHLRE_12g499400v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 259.6 bits (662), Expect = 6.600e-66
Identity = 116/152 (76.32%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:    6 VRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPL 158
            V+ +TS+G+FT+ELYY+HAPRTC NF ELA+ GYY+GTIFHRII+DFM QGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMAN+GPNTNGSQFF+TLAPTPWLDGKHTIFGRV+ GM ++++LG V+  + DRP+T+V+V +A P+
Sbjct:    6 VQIDTSMGSFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIRDFMCQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWLDGKHTIFGRVTSGMAVIKRLGNVQTDNLDRPVTEVKVIRARPV 157
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_008889955.1 (peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica INRA-310] >ETI57262.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica P1569] >ETK97034.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica] >ETL50386.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica] >ETM03427.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica] >ETM56685.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica] >ETN23812.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica INRA-310] >ETO86002.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica P1976] >ETP27047.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica CJ01A1] >ETP54995.1 peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica P10297])

HSP 1 Score: 259.6 bits (662), Expect = 6.600e-66
Identity = 114/155 (73.55%), Postives = 136/155 (87.74%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLT 159
            THV FET+VG FT+ELY +HAPRTC N AELAR GYYN TIFHRIIKDFMIQGGDPTGTGRGGESIYG KF+DEIT++LKHTGAG+LSMAN+GPNTNGSQFF+TLAPTPWLDGKHT+FGR+S GM ++Q++G+V  G  DRP  ++ + +A P++
Sbjct:   11 THVVFETTVGEFTMELYTEHAPRTCWNIAELARRGYYNNTIFHRIIKDFMIQGGDPTGTGRGGESIYGAKFDDEITKELKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTVFGRISSGMKVIQRMGMVPTGANDRPREEIHIKRAYPIS 165
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: CBN75545.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 258.1 bits (658), Expect = 1.900e-65
Identity = 113/158 (71.52%), Postives = 136/158 (86.08%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLTGPP 162
            THV F+TSVG+FT+ELY QHAP++CHN  ELAR GYY+ TIFHR+IKDFM+QGGDPTGTGRGGES +GGKFEDEI RDLKHTGAG++SMAN+GPNTNGSQFF+TL PTPWLDGKHTI GR+S GM +V+++G+V V   D+PL D+R+ +A PL   P
Sbjct:    7 THVHFQTSVGSFTVELYSQHAPKSCHNMGELARRGYYDNTIFHRVIKDFMVQGGDPTGTGRGGESSFGGKFEDEIRRDLKHTGAGVVSMANSGPNTNGSQFFVTLGPTPWLDGKHTILGRISSGMKVVRRMGMVAVNSEDKPLQDMRIVRAKPLVLAP 164
The following BLAST results are available for this feature:
BLAST of NO04G00270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28429.11.200e-8894.44peptidyl-prolyl cis-trans isomerase ppi1 [Nannochl... [more]
GAX93498.12.100e-6776.13peptidyl-prolyl cis-trans isomerase-like 1 [Pythiu... [more]
XP_012198039.14.600e-6776.97peptidyl-prolyl cis-trans isomerase-like 1 [Saprol... [more]
XP_008618739.16.000e-6776.32peptidyl-prolyl cis-trans isomerase-like 1 [Saprol... [more]
OQS07391.11.000e-6675.16peptidyl-prolyl cis-trans isomerase ppi1 [Thrausto... [more]
OQR98418.11.700e-6676.82peptidyl-prolyl cis-trans isomerase ppi1 [Achlya h... [more]
OWZ13923.15.100e-6674.19Peptidyl-prolyl cis-trans isomerase ppi1 [Phytopht... [more]
XP_001702337.16.600e-6676.32peptidyl-prolyl cis-trans isomerase, cyclophilin-t... [more]
XP_008889955.16.600e-6673.55peptidyl-prolyl cis-trans isomerase-like 1 [Phytop... [more]
CBN75545.11.900e-6571.52conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004978NSK004978Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00270.1NO04G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577991gene_1808Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100388g1gene2152Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00270.1NO04G00270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00270 ID=NO04G00270|Name=NO04G00270|organism=Nannochloropsis oceanica|type=gene|length=1372bp
ACAGGACAACTGGAAGGAGATAAAAGTCATGTCCTGGACACACGTGCGGT
TTGAGACCTCTGTGgtacgtagcgagcgggagtgttgggaggggtacagg
gaggggcgaagggggtggggaggcggagttggggatcatggtgattgttg
gcggatgccaggtctccttacaatatactgcaacaacacagGGCAATTTC
ACGCTGGAGCTCTACTATCAACATGCCCCACGAACATGCCACAACTTTGC
TGgtacgtattttggttggccccctctcttgctgtctcgtattccaccca
gtcatcctgcctccctctcctttcccccatcccacaactgcagAGCTCGC
CCGTGCCGGCTATTACAACGGCACAATTTTCCACCGCATCATCAAGgtag
gcgggaggaggggactgtccgtttagcttgttatgggcaaggaaactcgg
acatgccaggctatgcccatgtcctacataccaccctccaccctgctatc
ccctatccctgcagGATTTTATGATCCAGGGTGGAGATCCCACAGGCACA
GGGCGTGGAGGAGAATCGATTTACGGgtaagtgctctgggtcatgaaaaa
atccgagaacaagggaaatgcgagaacaagaggaaaataagaagcaagca
gcagcacatcagtcgattcacacatccacccatacgctcagAGGCAAGTT
TGAGGACGAAATAACACGGGACCTAAAGCACACGGGTGCCGGTATCCTTT
CCATGgtacgtacatatctatggcccgagttttccatggcccgagttttt
caccgtcctccgtccgattctaatcctccgtccctccctccccctacttg
acagGCCAACGCCGGTCCCAACACAAACGGCAGTCAGTTCTTCCTCACCC
TCGCCCCCACGCCCTGGCTGGACGGAAAACACACCATCTTTGGGCGTGTG
TCGCACGGCATGCCGATCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGA
CGGCGACCGgtgagaaggaggggagtgcagagggatgaggagagggaagt
gagggagggaggaaggggacggaggggaggaaggagttgagggaatattg
ctgtatgttataattcgtatgaagcttgtatgaatggtcttcttttatat
tacttacacacacatcttctcaatacagGCCATTGACCGACGTGCGGGTA
TTCAAGGCGACGCCACTGACGGGGCCGCCCGTTGACACCACAGTACGATA
ATTATCAAGTCGAGACTCAAGGAAGGCAGCGAGAAAGACAGAAATCTGTC
GAATGGCCGGATCAACTCTACTCCACGTCATACAAACCAAAACCAAAGTA
AACGATGAGATGAAGAGAAAAT
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protein sequence of NO04G00270.1

>NO04G00270.1-protein ID=NO04G00270.1-protein|Name=NO04G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSWTHVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIK
DFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTN
GSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVR
VFKATPLTGPPVDTTVR*
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Synonyms
Publications