NO04G00270.1, NO04G00270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00270.1
Unique NameNO04G00270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length653
Alignment locationchr4:119557..120928 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:119557..120928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G00270.1 vs.
Match: EWM28429.1 (peptidyl-prolyl cis-trans isomerase ppi1 [Nannochloropsis gaditana])

HSP 1 Score: 335.1 bits (858), Expect = 1.200e-88
Identity = 153/162 (94.44%), Postives = 160/162 (98.77%), Query Frame = 0 
Query:    1 MSWTHVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLTGPPV 163
            MSWTHVRFETSVGNFT+ELYY+HAPRTCHNFAELAR+GYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAG++SMANAGPNTNGSQFFLTL PTPWLDGKHTIFGR+SHGMPIVQKLGLVK G+GDRPLTDVRVFKATPLTGPPV
Sbjct:   38 MSWTHVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLTGPPV 199
The following BLAST results are available for this feature:
BLAST of NO04G00270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28429.11.200e-8894.44peptidyl-prolyl cis-trans isomerase ppi1 [Nannochl... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00270NO04G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00270.1NO04G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00270.1.cds1NO04G00270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00270.1.cds2NO04G00270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00270.1.cds3NO04G00270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00270.1.cds4NO04G00270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00270.1.cds5NO04G00270.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00270.1.cds6NO04G00270.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00270.1.cds7NO04G00270.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00270.1 ID=NO04G00270.1|Name=NO04G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=653bp
ACAGGACAACTGGAAGGAGATAAAAGTCATGTCCTGGACACACGTGCGGT
TTGAGACCTCTGTGGGCAATTTCACGCTGGAGCTCTACTATCAACATGCC
CCACGAACATGCCACAACTTTGCTGAGCTCGCCCGTGCCGGCTATTACAA
CGGCACAATTTTCCACCGCATCATCAAGGATTTTATGATCCAGGGTGGAG
ATCCCACAGGCACAGGGCGTGGAGGAGAATCGATTTACGGAGGCAAGTTT
GAGGACGAAATAACACGGGACCTAAAGCACACGGGTGCCGGTATCCTTTC
CATGGCCAACGCCGGTCCCAACACAAACGGCAGTCAGTTCTTCCTCACCC
TCGCCCCCACGCCCTGGCTGGACGGAAAACACACCATCTTTGGGCGTGTG
TCGCACGGCATGCCGATCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGA
CGGCGACCGGCCATTGACCGACGTGCGGGTATTCAAGGCGACGCCACTGA
CGGGGCCGCCCGTTGACACCACAGTACGATAATTATCAAGTCGAGACTCA
AGGAAGGCAGCGAGAAAGACAGAAATCTGTCGAATGGCCGGATCAACTCT
ACTCCACGTCATACAAACCAAAACCAAAGTAAACGATGAGATGAAGAGAA
AAT
back to top

protein sequence of NO04G00270.1

>NO04G00270.1-protein ID=NO04G00270.1-protein|Name=NO04G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSWTHVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIK
DFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTN
GSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVR
VFKATPLTGPPVDTTVR*
back to top

mRNA from alignment at chr4:119557..120928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00270.1 ID=NO04G00270.1|Name=NO04G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1372bp|location=Sequence derived from alignment at chr4:119557..120928+ (Nannochloropsis oceanica)
ACAGGACAACTGGAAGGAGATAAAAGTCATGTCCTGGACACACGTGCGGT
TTGAGACCTCTGTGGTACGTAGCGAGCGGGAGTGTTGGGAGGGGTACAGG
GAGGGGCGAAGGGGGTGGGGAGGCGGAGTTGGGGATCATGGTGATTGTTG
GCGGATGCCAGGTCTCCTTACAATATACTGCAACAACACAGGGCAATTTC
ACGCTGGAGCTCTACTATCAACATGCCCCACGAACATGCCACAACTTTGC
TGGTACGTATTTTGGTTGGCCCCCTCTCTTGCTGTCTCGTATTCCACCCA
GTCATCCTGCCTCCCTCTCCTTTCCCCCATCCCACAACTGCAGAGCTCGC
CCGTGCCGGCTATTACAACGGCACAATTTTCCACCGCATCATCAAGGTAG
GCGGGAGGAGGGGACTGTCCGTTTAGCTTGTTATGGGCAAGGAAACTCGG
ACATGCCAGGCTATGCCCATGTCCTACATACCACCCTCCACCCTGCTATC
CCCTATCCCTGCAGGATTTTATGATCCAGGGTGGAGATCCCACAGGCACA
GGGCGTGGAGGAGAATCGATTTACGGGTAAGTGCTCTGGGTCATGAAAAA
ATCCGAGAACAAGGGAAATGCGAGAACAAGAGGAAAATAAGAAGCAAGCA
GCAGCACATCAGTCGATTCACACATCCACCCATACGCTCAGAGGCAAGTT
TGAGGACGAAATAACACGGGACCTAAAGCACACGGGTGCCGGTATCCTTT
CCATGGTACGTACATATCTATGGCCCGAGTTTTCCATGGCCCGAGTTTTT
CACCGTCCTCCGTCCGATTCTAATCCTCCGTCCCTCCCTCCCCCTACTTG
ACAGGCCAACGCCGGTCCCAACACAAACGGCAGTCAGTTCTTCCTCACCC
TCGCCCCCACGCCCTGGCTGGACGGAAAACACACCATCTTTGGGCGTGTG
TCGCACGGCATGCCGATCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGA
CGGCGACCGGTGAGAAGGAGGGGAGTGCAGAGGGATGAGGAGAGGGAAGT
GAGGGAGGGAGGAAGGGGACGGAGGGGAGGAAGGAGTTGAGGGAATATTG
CTGTATGTTATAATTCGTATGAAGCTTGTATGAATGGTCTTCTTTTATAT
TACTTACACACACATCTTCTCAATACAGGCCATTGACCGACGTGCGGGTA
TTCAAGGCGACGCCACTGACGGGGCCGCCCGTTGACACCACAGTACGATA
ATTATCAAGTCGAGACTCAAGGAAGGCAGCGAGAAAGACAGAAATCTGTC
GAATGGCCGGATCAACTCTACTCCACGTCATACAAACCAAAACCAAAGTA
AACGATGAGATGAAGAGAAAAT
back to top

Coding sequence (CDS) from alignment at chr4:119557..120928+

>NO04G00270.1 ID=NO04G00270.1|Name=NO04G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr4:119557..120928+ (Nannochloropsis oceanica)
ATGTCCTGGACACACGTGCGGTTTGAGACCTCTGTGGGCAATTTCACGCT
GGAGCTCTACTATCAACATGCCCCACGAACATGCCACAACTTTGCTGAGC
TCGCCCGTGCCGGCTATTACAACGGCACAATTTTCCACCGCATCATCAAG
GATTTTATGATCCAGGGTGGAGATCCCACAGGCACAGGGCGTGGAGGAGA
ATCGATTTACGGAGGCAAGTTTGAGGACGAAATAACACGGGACCTAAAGC
ACACGGGTGCCGGTATCCTTTCCATGGCCAACGCCGGTCCCAACACAAAC
GGCAGTCAGTTCTTCCTCACCCTCGCCCCCACGCCCTGGCTGGACGGAAA
ACACACCATCTTTGGGCGTGTGTCGCACGGCATGCCGATCGTGCAGAAGC
TGGGCTTGGTGAAAGTCGGCGACGGCGACCGGCCATTGACCGACGTGCGG
GTATTCAAGGCGACGCCACTGACGGGGCCGCCCGTTGACACCACAGTACG
ATAA
back to top
Synonyms
Publications