NO03G05710, NO03G05710 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_003994750.1 (choline dehydrogenase [Streptomyces viridochromogenes] >EFL36597.1 choline dehydrogenase [Streptomyces viridochromogenes DSM 40736]) HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24 Identity = 119/350 (34.00%), Postives = 163/350 (46.57%), Query Frame = 0 Query: 3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT-TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPR---MVALGCANLRVH-GPG-----GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISR-GYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338 T A VTRVLF+ KRA GV Y RGR RV HA REV+LC G +P +L SGVG A EL ALG+ VV ++ GVG++L V Y V M P++ + A + L GP + V+G D DY M +P VA R V G +VH GP G V + DP A+HP ++ N + E+DRR +R R ++ +P M EI P + +TD+ + W+++ G T + H + T +MG V+D GV+GLRVVDAS +P + A + M+ E+AADLI Sbjct: 221 TRALVTRVLFE-GKRAVGVEY----------------------RRGRGRPQRV----HA-REVILCGGAINSPQLLQLSGVGNAEELSALGIDVVHDLPGVGENLQDHLEVYIQYACKQPV-SMQPYLAKWRAPFIGLQWLLRTGPAATNHFEAGGFVRGN--EDVDYPNLMFHFLP-VAVRYDGSVPAGGHGYQVHVGPMYSDAIGSVKIKSRDP--AEHPALRFNYLSTEQDRREWVEAVRVARKLLNQPAMAPYNAGEISPGPSV--ETDEEILAWVAKDGET--ALHPSCTCKMGTDEMAVVDPADLRVHGVEGLRVVDASVMPYITNGNIYAPVMMIAEKAADLI 532
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_010043822.1 (choline dehydrogenase [Streptomyces chartreusis] >SOR77229.1 Choline dehydrogenase [Streptomyces chartreusis NRRL 3882]) HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24 Identity = 118/352 (33.52%), Postives = 162/352 (46.02%), Query Frame = 0 Query: 1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT-TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPR---MVALGCANLRVH-GP-----GGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISR-GYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338 +RT A VTRVLF+ KRA GV Y RGR RV REV+LC G +P +L SGVG A EL ALGV VV ++ GVG++L V Y V M P++ + A + L GP + V+G D Y M +P VA R V G +VH GP G V + DP A+HP ++ N + E+DRR +R R ++ +P M EI P + +TD+ + W+++ G T + H + T +MG V+D GV+GLRVVDAS +P + A + M+ E+AADLI Sbjct: 219 VRTRALVTRVLFE-GKRAVGVEY----------------------RRGRGRPQRV-----RAREVILCGGAINSPQLLQLSGVGNAEELSALGVDVVHDLPGVGENLQDHLEVYIQYACKQPV-SMQPYLAKWRAPFIGLQWLFRTGPAATNHFEAGGFVRGN--EDVAYPNLMFHFLP-VAVRYDGSVPAGGHGYQVHVGPMYSDAVGSVKIKSKDP--AEHPALRFNYLSTEQDRREWVEAVRVARKLLNQPAMAPYNAGEISPGPSV--ETDEEILAWVAKDGET--ALHPSCTCKMGTDEMAVVDPASMRVHGVEGLRVVDASVMPYITNGNIYAPVMMIAEKAADLI 532
BLAST of NO03G05710 vs. NCBI_GenBank
Match: ASN51083.1 (hypothetical protein CGQ25_02520 [Sinomonas sp. R1AF57]) HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24 Identity = 116/332 (34.94%), Postives = 155/332 (46.69%), Query Frame = 0 Query: 35 TGINRNDPRLGSRGREAAARVTLHAHAT---REVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVP-----EMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHGPG-------------GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMM-AEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMG----DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKED 341 TG +G+ G +AA HA REV+LCAG +P ILL SG+GP+ L +G+PVV ++ GVG++L NV P + P+ L P Y L RGP + L + PG L D+ P + A+ R+ G G G V L DPL PRIQ N A+ DR AL +R VR+++ AEP+ G E +P V+D D L W +R + + H TARMG V+D+R+RV GV GLRVVDAS +P +I M+ ERAADLIK + Sbjct: 215 TGARVTRLHIGASGVDAAYVKDGRPHAVRARREVLLCAGALHSPQILLLSGIGPSGHLRQMGIPVVKDLPGVGQNL--HDNVAMGVACSCAQPLGFGRALAPWAL--PRHLLHYLLSRRGPLASNVLEAGGFARSE-PG-----LAAPDLQFAFLP-VWAMDHGLTRIKGDGFVLLTLLLRPESRGSVTLRSADPLDP--PRIQPNYLASRGDRAALLRGIRLVREVVSAEPLAALRG-DECYPGAG-VQDDDGLL-AW-TRAFAEHGDHPVGTARMGRDAMAVVDERLRVH-GVPGLRVVDASVMPTIIGGNTNIPTVMIAERAADLIKAE 528
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_028639508.1 (choline dehydrogenase [Novosphingobium acidiphilum]) HSP 1 Score: 120.9 bits (302), Expect = 7.600e-24 Identity = 115/350 (32.86%), Postives = 161/350 (46.00%), Query Frame = 0 Query: 3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNV-LFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPE---VAPRM--VALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGD------VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338 TGAR RV+ + RATG+ Y++ + G+ AA AHA REV++CAG F +P IL+ SG+G L A G+ V GVG +L +V L + + + L+ Y L GP L + +K R D D I F+ ++ + V P + LR G+V L DP P I +N + EEDRRA+R +R VRD++A+P G EI P + +D A+D ++ +RG T Y H T RMG V+D RV G+QGLRVVDAS +P +I A M+ E+ AD I Sbjct: 218 TGARTHRVIIE-GGRATGIEYSLGQ--------------------GKPAAV-----AHAGREVLVCAGAFQSPQILMLSGIGDPDALTAQGIAPVHPRPGVGGNLQDHLDVSLNWTVSQPITLYHETKGLKQLKVGLQYLLTGTGPGRQNGLETGAFLKSRVDLDRPDLQIHFVLAIMQDHAKVRPTQDGFTMHVCQLRPES-RGRVSLVSADPYA--DPAIVMNFLSTEEDRRAVREGVRMVRDVVAQPAFAAFGAKEIMPGPAVADDA--AIDAFVRARGETIY--HPVGTCRMGQADDPLAVVDKDCRVI-GLQGLRVVDASVIPTLIGGNTNAPTIMIAEKIADAI 533
BLAST of NO03G05710 vs. NCBI_GenBank
Match: KHS45058.1 (glucose-methanol-choline oxidoreductase [Novosphingobium subterraneum]) HSP 1 Score: 120.9 bits (302), Expect = 7.600e-24 Identity = 111/350 (31.71%), Postives = 154/350 (44.00%), Query Frame = 0 Query: 3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFV-LRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPEVAPRMVALGCANLRV----HGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGDVLDDRMRVQG------GVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIK 339 TGARV R++ + N RA GV Y++ + V + A ATREV+LCAG F +P IL SG+G L+A GV V + GVG +L +V + + N LR Y L +G L + +K R D D I F+ ++ E A + V GQV L DP P I N AAEEDRR +R +R R + + + EI+P + D D +D W+ +RG T Y H TA+MG DD M V G++GLRV+DAS +P +I A M+ E+ AD+I+ Sbjct: 220 TGARVHRIVVE-NGRAVGVDYSLGQGKPV-------------------------IRASATREVLLCAGAFQSPQILQLSGIGDHEALKAKGVAPVHALKGVGANLQDHLDVTLNWACTQPISLYNEIKGLRQLKVGLQYLLTGKGTGRQNGLEAGAFLKSRPDLDRPDLQIHFVIAIMQEHAKVQAKRDGFTIHVCQLRPDSRGQVSLSSADPYA--DPAILANFLAAEEDRRVVREGIRIARKVAGQEALAPYRGEEIWPGAHVQSDAD--IDAWVRARGETIY--HPVGTAKMG-TRDDPMAVVDKDCKVIGLEGLRVIDASVMPTLIGGNTNAPTIMIAEKIADVIR 536
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_039335831.1 (choline dehydrogenase [Novosphingobium subterraneum]) HSP 1 Score: 120.9 bits (302), Expect = 7.600e-24 Identity = 111/350 (31.71%), Postives = 154/350 (44.00%), Query Frame = 0 Query: 3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFV-LRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPEVAPRMVALGCANLRV----HGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGDVLDDRMRVQG------GVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIK 339 TGARV R++ + N RA GV Y++ + V + A ATREV+LCAG F +P IL SG+G L+A GV V + GVG +L +V + + N LR Y L +G L + +K R D D I F+ ++ E A + V GQV L DP P I N AAEEDRR +R +R R + + + EI+P + D D +D W+ +RG T Y H TA+MG DD M V G++GLRV+DAS +P +I A M+ E+ AD+I+ Sbjct: 219 TGARVHRIVVE-NGRAVGVDYSLGQGKPV-------------------------IRASATREVLLCAGAFQSPQILQLSGIGDHEALKAKGVAPVHALKGVGANLQDHLDVTLNWACTQPISLYNEIKGLRQLKVGLQYLLTGKGTGRQNGLEAGAFLKSRPDLDRPDLQIHFVIAIMQEHAKVQAKRDGFTIHVCQLRPDSRGQVSLSSADPYA--DPAILANFLAAEEDRRVVREGIRIARKVAGQEALAPYRGEEIWPGAHVQSDAD--IDAWVRARGETIY--HPVGTAKMG-TRDDPMAVVDKDCKVIGLEGLRVIDASVMPTLIGGNTNAPTIMIAEKIADVIR 535
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_030247466.1 (MULTISPECIES: choline dehydrogenase [Streptomyces]) HSP 1 Score: 120.6 bits (301), Expect = 9.900e-24 Identity = 110/347 (31.70%), Postives = 157/347 (45.24%), Query Frame = 0 Query: 3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT-TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVH-GPG-----GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISR-GYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338 T A VTRVLF+ KRA GV Y RGR RV RE++LC G +P +L SGVG A EL ALG+ VV ++ GVG++L V Y V M P++ + A + L GP + V+G D ++F + V G +VH GP G V + DP A+HP ++ N + E+DRR +R R ++ +P M EI P + +TD+ + W+++ G T + H + T +MG V+D GV+GLRVVDAS +P + A + M+ E+AADLI Sbjct: 221 TRALVTRVLFE-GKRAVGVEY----------------------RRGRARPQRV-----GAREIILCGGAINSPQLLQLSGVGNAEELSALGIDVVHDLPGVGENLQDHLEVYIQYACEQPV-SMQPYLAKWRAPFIGLQWLFRTGPAATNHFEAGGFVRGNEEVDYPNLMFHFLPVAVRYDGSVPAGGHGYQVHVGPMYSDAIGSVKIKSKDP--AEHPALRFNYLSTEQDRREWVEAVRVARKLLNQPAMAPYNAGEISPGPSV--ETDEEILDWVAKDGET--ALHPSCTCKMGTDEMAVVDPASMRVRGVEGLRVVDASVMPYITNGNIYAPVMMIAEKAADLI 532
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_030954645.1 (choline dehydrogenase, partial [Streptomyces sp. NRRL S-481]) HSP 1 Score: 120.6 bits (301), Expect = 9.900e-24 Identity = 110/347 (31.70%), Postives = 157/347 (45.24%), Query Frame = 0 Query: 3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT-TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVH-GPG-----GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISR-GYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338 T A VTRVLF+ KRA GV Y RGR RV RE++LC G +P +L SGVG A EL ALG+ VV ++ GVG++L V Y V M P++ + A + L GP + V+G D ++F + V G +VH GP G V + DP A+HP ++ N + E+DRR +R R ++ +P M EI P + +TD+ + W+++ G T + H + T +MG V+D GV+GLRVVDAS +P + A + M+ E+AADLI Sbjct: 162 TRALVTRVLFE-GKRAVGVEY----------------------RRGRARPQRV-----GAREIILCGGAINSPQLLQLSGVGNAEELSALGIDVVHDLPGVGENLQDHLEVYIQYACEQPV-SMQPYLAKWRAPFIGLQWLFRTGPAATNHFEAGGFVRGNEEVDYPNLMFHFLPVAVRYDGSVPAGGHGYQVHVGPMYSDAIGSVKIKSKDP--AEHPALRFNYLSTEQDRREWVEAVRVARKLLNQPAMAPYNAGEISPGPSV--ETDEEILDWVAKDGET--ALHPSCTCKMGTDETAVVDPASMRVRGVEGLRVVDASVMPYITNGNIYAPVMMIAEKAADLI 473
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_081933176.1 (oxidoreductase [Sphingopyxis sp. LC363] >KGB54465.1 Glucose-methanol-choline oxidoreductase [Sphingopyxis sp. LC363]) HSP 1 Score: 120.6 bits (301), Expect = 9.900e-24 Identity = 92/297 (30.98%), Postives = 149/297 (50.17%), Query Frame = 0 Query: 63 REVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVP-EMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKG---RYPGDDDYILFMTDVIPEVAPR--------MVALGCANL-RVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYR 343 +EV++ +G F +P IL+ SGVGP AEL+ G+ VV ++GVG++L +V+ + + +NP L ++ + +G + LG G R D D F VIP +A R M G L + P + + D P I LN+ + +DR ALR+ + +D++ M ++PTH+L ED + +D +++ + +S+H T +MG V+D R++V+ G+Q +RV DAS +P +I AT M+GE+AAD+I ED R Sbjct: 247 KEVIVSSGTFNSPQILMLSGVGPRAELDRHGIEVVQEINGVGQNLHDHPDVMMIFETRKRIGIALNPLGLIKSTKDLLHYIVRKGSW----LGNPPTAAGGFLRSDPDRDRPDFQLHVIP-LAYRDHARDYRLMTKWGFTVLINIGHPKSRGAVRLRDSSALSDPLIDLNLLSHPDDRTALRNAFKITQDILFSETMNDVVKRPLYPTHKLNEDQE--IDAYLTE-HVNHSYHPVGTCKMGTDALAVVDTRLKVR-GLQNVRVADASIMPTIINGNTNATCIMIGEKAADMIVEDQR 534
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_089345550.1 (choline dehydrogenase [Paracoccus seriniphilus] >SNT76226.1 choline dehydrogenase [Paracoccus seriniphilus]) HSP 1 Score: 120.6 bits (301), Expect = 9.900e-24 Identity = 98/298 (32.89%), Postives = 147/298 (49.33%), Query Frame = 0 Query: 61 ATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGK----HLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDV----IPEVAPRMVALGCANLRVHGPG--GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRL-VEDTDKALDRWISRGYTFYSWHATSTARMG----DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYRE 344 A REV+L +G +P IL+ SG+G AEL GV ++ GVGK HL ART F N +V E+ V + T Y L+ GP ++GA + ++ + I F + P + A + V P G++ L DPL A P+IQ N A E+D R +R R + + + + E P L ++D D ALD W+ RG + +H T +MG V+D+R+RV G+QGLRVVD S +P+++ A M+ E+A+D+I +D R+ Sbjct: 244 ARREVILSSGAVGSPQILMLSGIGDDAELRKAGVRPHHHLPGVGKNLQDHLQARTT--FKTRNKTVNDEVRSLVAK-MKTAARYGLKRNGPMTMGASMVAGFLRSSPDEETPDIQFHINPWSADSPAEGVHPFSAFTATVCVLRPSSKGEITLAGPDPLAA--PKIQPNYLATEDDCRRTVEGVRISRRIARQAALASEIIEEFRPPQDLDLDDYDAALD-WV-RGNSTTVYHPAGTCKMGKDQTSVVDERLRVH-GIQGLRVVDCSIMPEIVSGNTNAPAVMVAEKASDMILDDARQ 533 The following BLAST results are available for this feature:
BLAST of NO03G05710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G05710 ID=NO03G05710|Name=NO03G05710|organism=Nannochloropsis oceanica|type=gene|length=1038bpback to top protein sequence of NO03G05710.1 >NO03G05710.1-protein ID=NO03G05710.1-protein|Name=NO03G05710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bpback to top Synonyms
Publications
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