NO03G05710, NO03G05710 (gene) Nannochloropsis oceanica

Overview
NameNO03G05710
Unique NameNO03G05710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1038
Alignment locationchr3:1640988..1642025 +

Link to JBrowse

Properties
Property NameValue
DescriptionCholine dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1640988..1642025 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036188FAD/NAD-bd_sf
IPR007867GMC_OxRtase_C
IPR000172GMC_OxRdtase_N
Homology
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_003994750.1 (choline dehydrogenase [Streptomyces viridochromogenes] >EFL36597.1 choline dehydrogenase [Streptomyces viridochromogenes DSM 40736])

HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24
Identity = 119/350 (34.00%), Postives = 163/350 (46.57%), Query Frame = 0
Query:    3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT-TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPR---MVALGCANLRVH-GPG-----GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISR-GYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338
            T A VTRVLF+  KRA GV Y                       RGR    RV    HA REV+LC G   +P +L  SGVG A EL ALG+ VV ++ GVG++L     V   Y     V  M P++ +  A    +  L   GP +         V+G    D DY   M   +P VA R    V  G    +VH GP      G V +   DP  A+HP ++ N  + E+DRR     +R  R ++ +P M      EI P   +  +TD+ +  W+++ G T  + H + T +MG     V+D       GV+GLRVVDAS +P +      A + M+ E+AADLI
Sbjct:  221 TRALVTRVLFE-GKRAVGVEY----------------------RRGRGRPQRV----HA-REVILCGGAINSPQLLQLSGVGNAEELSALGIDVVHDLPGVGENLQDHLEVYIQYACKQPV-SMQPYLAKWRAPFIGLQWLLRTGPAATNHFEAGGFVRGN--EDVDYPNLMFHFLP-VAVRYDGSVPAGGHGYQVHVGPMYSDAIGSVKIKSRDP--AEHPALRFNYLSTEQDRREWVEAVRVARKLLNQPAMAPYNAGEISPGPSV--ETDEEILAWVAKDGET--ALHPSCTCKMGTDEMAVVDPADLRVHGVEGLRVVDASVMPYITNGNIYAPVMMIAEKAADLI 532          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_010043822.1 (choline dehydrogenase [Streptomyces chartreusis] >SOR77229.1 Choline dehydrogenase [Streptomyces chartreusis NRRL 3882])

HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24
Identity = 118/352 (33.52%), Postives = 162/352 (46.02%), Query Frame = 0
Query:    1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT-TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPR---MVALGCANLRVH-GP-----GGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISR-GYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338
            +RT A VTRVLF+  KRA GV Y                       RGR    RV       REV+LC G   +P +L  SGVG A EL ALGV VV ++ GVG++L     V   Y     V  M P++ +  A    +  L   GP +         V+G    D  Y   M   +P VA R    V  G    +VH GP      G V +   DP  A+HP ++ N  + E+DRR     +R  R ++ +P M      EI P   +  +TD+ +  W+++ G T  + H + T +MG     V+D       GV+GLRVVDAS +P +      A + M+ E+AADLI
Sbjct:  219 VRTRALVTRVLFE-GKRAVGVEY----------------------RRGRGRPQRV-----RAREVILCGGAINSPQLLQLSGVGNAEELSALGVDVVHDLPGVGENLQDHLEVYIQYACKQPV-SMQPYLAKWRAPFIGLQWLFRTGPAATNHFEAGGFVRGN--EDVAYPNLMFHFLP-VAVRYDGSVPAGGHGYQVHVGPMYSDAVGSVKIKSKDP--AEHPALRFNYLSTEQDRREWVEAVRVARKLLNQPAMAPYNAGEISPGPSV--ETDEEILAWVAKDGET--ALHPSCTCKMGTDEMAVVDPASMRVHGVEGLRVVDASVMPYITNGNIYAPVMMIAEKAADLI 532          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: ASN51083.1 (hypothetical protein CGQ25_02520 [Sinomonas sp. R1AF57])

HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24
Identity = 116/332 (34.94%), Postives = 155/332 (46.69%), Query Frame = 0
Query:   35 TGINRNDPRLGSRGREAAARVTLHAHAT---REVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVP-----EMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHGPG-------------GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMM-AEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMG----DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKED 341
            TG       +G+ G +AA       HA    REV+LCAG   +P ILL SG+GP+  L  +G+PVV ++ GVG++L    NV          P      + P+ L  P     Y L  RGP +   L      +   PG     L   D+     P + A+     R+ G G             G V L   DPL    PRIQ N  A+  DR AL   +R VR+++ AEP+    G  E +P    V+D D  L  W +R +  +  H   TARMG     V+D+R+RV  GV GLRVVDAS +P +I         M+ ERAADLIK +
Sbjct:  215 TGARVTRLHIGASGVDAAYVKDGRPHAVRARREVLLCAGALHSPQILLLSGIGPSGHLRQMGIPVVKDLPGVGQNL--HDNVAMGVACSCAQPLGFGRALAPWAL--PRHLLHYLLSRRGPLASNVLEAGGFARSE-PG-----LAAPDLQFAFLP-VWAMDHGLTRIKGDGFVLLTLLLRPESRGSVTLRSADPLDP--PRIQPNYLASRGDRAALLRGIRLVREVVSAEPLAALRG-DECYPGAG-VQDDDGLL-AW-TRAFAEHGDHPVGTARMGRDAMAVVDERLRVH-GVPGLRVVDASVMPTIIGGNTNIPTVMIAERAADLIKAE 528          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_028639508.1 (choline dehydrogenase [Novosphingobium acidiphilum])

HSP 1 Score: 120.9 bits (302), Expect = 7.600e-24
Identity = 115/350 (32.86%), Postives = 161/350 (46.00%), Query Frame = 0
Query:    3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNV-LFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPE---VAPRM--VALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGD------VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338
            TGAR  RV+ +   RATG+ Y++ +                    G+ AA      AHA REV++CAG F +P IL+ SG+G    L A G+  V    GVG +L    +V L +  +  +        L+       Y L   GP     L   + +K R   D  D  I F+  ++ +   V P      +    LR     G+V L   DP     P I +N  + EEDRRA+R  +R VRD++A+P     G  EI P   + +D   A+D ++ +RG T Y  H   T RMG       V+D   RV  G+QGLRVVDAS +P +I     A   M+ E+ AD I
Sbjct:  218 TGARTHRVIIE-GGRATGIEYSLGQ--------------------GKPAAV-----AHAGREVLVCAGAFQSPQILMLSGIGDPDALTAQGIAPVHPRPGVGGNLQDHLDVSLNWTVSQPITLYHETKGLKQLKVGLQYLLTGTGPGRQNGLETGAFLKSRVDLDRPDLQIHFVLAIMQDHAKVRPTQDGFTMHVCQLRPES-RGRVSLVSADPYA--DPAIVMNFLSTEEDRRAVREGVRMVRDVVAQPAFAAFGAKEIMPGPAVADDA--AIDAFVRARGETIY--HPVGTCRMGQADDPLAVVDKDCRVI-GLQGLRVVDASVIPTLIGGNTNAPTIMIAEKIADAI 533          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: KHS45058.1 (glucose-methanol-choline oxidoreductase [Novosphingobium subterraneum])

HSP 1 Score: 120.9 bits (302), Expect = 7.600e-24
Identity = 111/350 (31.71%), Postives = 154/350 (44.00%), Query Frame = 0
Query:    3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFV-LRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPEVAPRMVALGCANLRV----HGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGDVLDDRMRVQG------GVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIK 339
            TGARV R++ + N RA GV Y++ +   V                         + A ATREV+LCAG F +P IL  SG+G    L+A GV  V  + GVG +L    +V   +     +   N    LR       Y L  +G      L   + +K R   D  D  I F+  ++ E A          + V        GQV L   DP     P I  N  AAEEDRR +R  +R  R +  +  +      EI+P   +  D D  +D W+ +RG T Y  H   TA+MG   DD M V        G++GLRV+DAS +P +I     A   M+ E+ AD+I+
Sbjct:  220 TGARVHRIVVE-NGRAVGVDYSLGQGKPV-------------------------IRASATREVLLCAGAFQSPQILQLSGIGDHEALKAKGVAPVHALKGVGANLQDHLDVTLNWACTQPISLYNEIKGLRQLKVGLQYLLTGKGTGRQNGLEAGAFLKSRPDLDRPDLQIHFVIAIMQEHAKVQAKRDGFTIHVCQLRPDSRGQVSLSSADPYA--DPAILANFLAAEEDRRVVREGIRIARKVAGQEALAPYRGEEIWPGAHVQSDAD--IDAWVRARGETIY--HPVGTAKMG-TRDDPMAVVDKDCKVIGLEGLRVIDASVMPTLIGGNTNAPTIMIAEKIADVIR 536          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_039335831.1 (choline dehydrogenase [Novosphingobium subterraneum])

HSP 1 Score: 120.9 bits (302), Expect = 7.600e-24
Identity = 111/350 (31.71%), Postives = 154/350 (44.00%), Query Frame = 0
Query:    3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFV-LRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPEVAPRMVALGCANLRV----HGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGDVLDDRMRVQG------GVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIK 339
            TGARV R++ + N RA GV Y++ +   V                         + A ATREV+LCAG F +P IL  SG+G    L+A GV  V  + GVG +L    +V   +     +   N    LR       Y L  +G      L   + +K R   D  D  I F+  ++ E A          + V        GQV L   DP     P I  N  AAEEDRR +R  +R  R +  +  +      EI+P   +  D D  +D W+ +RG T Y  H   TA+MG   DD M V        G++GLRV+DAS +P +I     A   M+ E+ AD+I+
Sbjct:  219 TGARVHRIVVE-NGRAVGVDYSLGQGKPV-------------------------IRASATREVLLCAGAFQSPQILQLSGIGDHEALKAKGVAPVHALKGVGANLQDHLDVTLNWACTQPISLYNEIKGLRQLKVGLQYLLTGKGTGRQNGLEAGAFLKSRPDLDRPDLQIHFVIAIMQEHAKVQAKRDGFTIHVCQLRPDSRGQVSLSSADPYA--DPAILANFLAAEEDRRVVREGIRIARKVAGQEALAPYRGEEIWPGAHVQSDAD--IDAWVRARGETIY--HPVGTAKMG-TRDDPMAVVDKDCKVIGLEGLRVIDASVMPTLIGGNTNAPTIMIAEKIADVIR 535          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_030247466.1 (MULTISPECIES: choline dehydrogenase [Streptomyces])

HSP 1 Score: 120.6 bits (301), Expect = 9.900e-24
Identity = 110/347 (31.70%), Postives = 157/347 (45.24%), Query Frame = 0
Query:    3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT-TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVH-GPG-----GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISR-GYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338
            T A VTRVLF+  KRA GV Y                       RGR    RV       RE++LC G   +P +L  SGVG A EL ALG+ VV ++ GVG++L     V   Y     V  M P++ +  A    +  L   GP +         V+G    D   ++F    +       V  G    +VH GP      G V +   DP  A+HP ++ N  + E+DRR     +R  R ++ +P M      EI P   +  +TD+ +  W+++ G T  + H + T +MG     V+D       GV+GLRVVDAS +P +      A + M+ E+AADLI
Sbjct:  221 TRALVTRVLFE-GKRAVGVEY----------------------RRGRARPQRV-----GAREIILCGGAINSPQLLQLSGVGNAEELSALGIDVVHDLPGVGENLQDHLEVYIQYACEQPV-SMQPYLAKWRAPFIGLQWLFRTGPAATNHFEAGGFVRGNEEVDYPNLMFHFLPVAVRYDGSVPAGGHGYQVHVGPMYSDAIGSVKIKSKDP--AEHPALRFNYLSTEQDRREWVEAVRVARKLLNQPAMAPYNAGEISPGPSV--ETDEEILDWVAKDGET--ALHPSCTCKMGTDEMAVVDPASMRVRGVEGLRVVDASVMPYITNGNIYAPVMMIAEKAADLI 532          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_030954645.1 (choline dehydrogenase, partial [Streptomyces sp. NRRL S-481])

HSP 1 Score: 120.6 bits (301), Expect = 9.900e-24
Identity = 110/347 (31.70%), Postives = 157/347 (45.24%), Query Frame = 0
Query:    3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT-TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVH-GPG-----GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISR-GYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338
            T A VTRVLF+  KRA GV Y                       RGR    RV       RE++LC G   +P +L  SGVG A EL ALG+ VV ++ GVG++L     V   Y     V  M P++ +  A    +  L   GP +         V+G    D   ++F    +       V  G    +VH GP      G V +   DP  A+HP ++ N  + E+DRR     +R  R ++ +P M      EI P   +  +TD+ +  W+++ G T  + H + T +MG     V+D       GV+GLRVVDAS +P +      A + M+ E+AADLI
Sbjct:  162 TRALVTRVLFE-GKRAVGVEY----------------------RRGRARPQRV-----GAREIILCGGAINSPQLLQLSGVGNAEELSALGIDVVHDLPGVGENLQDHLEVYIQYACEQPV-SMQPYLAKWRAPFIGLQWLFRTGPAATNHFEAGGFVRGNEEVDYPNLMFHFLPVAVRYDGSVPAGGHGYQVHVGPMYSDAIGSVKIKSKDP--AEHPALRFNYLSTEQDRREWVEAVRVARKLLNQPAMAPYNAGEISPGPSV--ETDEEILDWVAKDGET--ALHPSCTCKMGTDETAVVDPASMRVRGVEGLRVVDASVMPYITNGNIYAPVMMIAEKAADLI 473          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_081933176.1 (oxidoreductase [Sphingopyxis sp. LC363] >KGB54465.1 Glucose-methanol-choline oxidoreductase [Sphingopyxis sp. LC363])

HSP 1 Score: 120.6 bits (301), Expect = 9.900e-24
Identity = 92/297 (30.98%), Postives = 149/297 (50.17%), Query Frame = 0
Query:   63 REVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVP-EMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKG---RYPGDDDYILFMTDVIPEVAPR--------MVALGCANL-RVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYR 343
            +EV++ +G F +P IL+ SGVGP AEL+  G+ VV  ++GVG++L    +V+  +     +   +NP  L       ++ +  +G +    LG      G   R   D D   F   VIP +A R        M   G   L  +  P  +  +   D      P I LN+ +  +DR ALR+  +  +D++    M       ++PTH+L ED +  +D +++  +  +S+H   T +MG     V+D R++V+ G+Q +RV DAS +P +I     AT  M+GE+AAD+I ED R
Sbjct:  247 KEVIVSSGTFNSPQILMLSGVGPRAELDRHGIEVVQEINGVGQNLHDHPDVMMIFETRKRIGIALNPLGLIKSTKDLLHYIVRKGSW----LGNPPTAAGGFLRSDPDRDRPDFQLHVIP-LAYRDHARDYRLMTKWGFTVLINIGHPKSRGAVRLRDSSALSDPLIDLNLLSHPDDRTALRNAFKITQDILFSETMNDVVKRPLYPTHKLNEDQE--IDAYLTE-HVNHSYHPVGTCKMGTDALAVVDTRLKVR-GLQNVRVADASIMPTIINGNTNATCIMIGEKAADMIVEDQR 534          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_089345550.1 (choline dehydrogenase [Paracoccus seriniphilus] >SNT76226.1 choline dehydrogenase [Paracoccus seriniphilus])

HSP 1 Score: 120.6 bits (301), Expect = 9.900e-24
Identity = 98/298 (32.89%), Postives = 147/298 (49.33%), Query Frame = 0
Query:   61 ATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGK----HLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDV----IPEVAPRMVALGCANLRVHGPG--GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRL-VEDTDKALDRWISRGYTFYSWHATSTARMG----DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYRE 344
            A REV+L +G   +P IL+ SG+G  AEL   GV    ++ GVGK    HL ART   F   N +V  E+   V +   T   Y L+  GP ++GA  +   ++     +   I F  +      P       +   A + V  P   G++ L   DPL A  P+IQ N  A E+D R     +R  R +  +  + +    E  P   L ++D D ALD W+ RG +   +H   T +MG     V+D+R+RV  G+QGLRVVD S +P+++     A   M+ E+A+D+I +D R+
Sbjct:  244 ARREVILSSGAVGSPQILMLSGIGDDAELRKAGVRPHHHLPGVGKNLQDHLQARTT--FKTRNKTVNDEVRSLVAK-MKTAARYGLKRNGPMTMGASMVAGFLRSSPDEETPDIQFHINPWSADSPAEGVHPFSAFTATVCVLRPSSKGEITLAGPDPLAA--PKIQPNYLATEDDCRRTVEGVRISRRIARQAALASEIIEEFRPPQDLDLDDYDAALD-WV-RGNSTTVYHPAGTCKMGKDQTSVVDERLRVH-GIQGLRVVDCSIMPEIVSGNTNAPAVMVAEKASDMILDDARQ 533          
The following BLAST results are available for this feature:
BLAST of NO03G05710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_003994750.15.800e-2434.00choline dehydrogenase [Streptomyces viridochromoge... [more]
WP_010043822.15.800e-2433.52choline dehydrogenase [Streptomyces chartreusis] >... [more]
ASN51083.15.800e-2434.94hypothetical protein CGQ25_02520 [Sinomonas sp. R1... [more]
WP_028639508.17.600e-2432.86choline dehydrogenase [Novosphingobium acidiphilum... [more]
KHS45058.17.600e-2431.71glucose-methanol-choline oxidoreductase [Novosphin... [more]
WP_039335831.17.600e-2431.71choline dehydrogenase [Novosphingobium subterraneu... [more]
WP_030247466.19.900e-2431.70MULTISPECIES: choline dehydrogenase [Streptomyces][more]
WP_030954645.19.900e-2431.70choline dehydrogenase, partial [Streptomyces sp. N... [more]
WP_081933176.19.900e-2430.98oxidoreductase [Sphingopyxis sp. LC363] >KGB54465.... [more]
WP_089345550.19.900e-2432.89choline dehydrogenase [Paracoccus seriniphilus] >S... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05710.1NO03G05710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05710.1NO03G05710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05710 ID=NO03G05710|Name=NO03G05710|organism=Nannochloropsis oceanica|type=gene|length=1038bp
ATGCGCACCGGGGCCCGCGTCACGCGAGTTCTATTCGACAAAAATAAACG
TGCTACAGGTGTCGTGTACACCGTGGCAGAATCGGGCGATGTTGACTCCT
CAACTGGCATAAATCGTAACGACCCGCGCCTCGGCAGCCGGGGCCGGGAA
GCCGCTGCCCGTGTAACACTTCATGCCCATGCCACGCGAGAGGTTGTTTT
ATGTGCGGGCGTTTTTTTCACGCCCCATATACTCCTTAAATCAGGTGTCG
GACCTGCTGCGGAGCTCGAGGCCCTGGGCGTACCCGTGGTAGCAAACGTG
TCGGGGGTAGGGAAGCACTTACTGGCCCGAACAAACGTGCTCTTCTTCTA
CGGGAATGGCTCGGTGGTGCCGGAAATGAATCCTTTCGTTCTGCGAGATC
CGGCAACCACGGAGATGTATGATTTAGAGCACCGAGGTCCCTATAGCTTG
GGGGCTCTGGGCATCTACAGCGTTGTCAAGGGCCGTTACCCTGGAGACGA
CGATTACATCCTGTTCATGACGGACGTGATCCCCGAAGTGGCCCCACGCA
TGGTCGCCTTGGGCTGCGCCAATTTGCGGGTTCATGGACCTGGTGGACAG
GTACTGCTGGACCCCACTGATCCCTTAGGGGCAAAACACCCGCGCATCCA
ACTCAACATGGCAGCTGCGGAGGAAGACCGGCGGGCTTTGCGGCACTGCT
TGCGGGATGTGCGGGATATGATGGCCGAACCCATCATGACCACCAATGGA
TTTTACGAAATTTTCCCGACGCATCGACTGGTGGAGGATACAGATAAGGC
CCTGGATCGCTGGATCAGTAGGGGCTACACGTTCTATAGCTGGCACGCGA
CGAGCACGGCCCGAATGGGAGACGTGCTGGATGATCGTATGCGTGTGCAA
GGGGGCGTTCAAGGCTTGCGGGTGGTAGATGCAAGTGCAGTGCCAGACAT
GATCGAGGCTGGGCCAATGGCCACGTTGTTTATGCTGGGGGAGCGGGCCG
CGGATCTGATCAAGGAAGACTATCGGGAAAATACATAG
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protein sequence of NO03G05710.1

>NO03G05710.1-protein ID=NO03G05710.1-protein|Name=NO03G05710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGRE
AAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANV
SGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSL
GALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHGPGGQ
VLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNG
FYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGDVLDDRMRVQ
GGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYRENT*
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Synonyms
Publications