NO03G05710.1, NO03G05710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05710.1
Unique NameNO03G05710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1038
Alignment locationchr3:1640988..1642025 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1640988..1642025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G05710.1 vs.
Match: EWM30046.1 (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 550.8 bits (1418), Expect = 3.000e-153
Identity = 269/344 (78.20%), Postives = 306/344 (88.95%), Query Frame = 0
Query:    1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLG-SRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGDVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYRE 344
            +RTGARVTR++FD++ RATGV Y   + G +   TG+   DPR+G SR RE AA VTL A+A REV+LCAGVFFTPH+LLKSG+GPAAELEALGVPVVA++ GVGKHL+ARTNVLFF+GNGS+VPEMNPFVL +PATT+ YDLE RGPYSLGALGIYSVVKGR   +DDYI+FMTDVIPEVAPRM+ALGCANL+VHGPGGQVLLD  DPL A+HPRIQLNMAAAEEDRRA+RHCLRDVRDMMAEP+M   GF E FPT RLV++++KALD WISRGYTFYSWHATSTARMGDVLD R+RVQGGV+GLRVVDASAVP+MIEAGPMATL+MLGERAADLIKED ++
Sbjct:  262 VRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALGCANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGDVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKEDNQD 605          
The following BLAST results are available for this feature:
BLAST of NO03G05710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30046.13.000e-15378.20choline dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05710NO03G05710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05710.1NO03G05710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05710.1.cds1NO03G05710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05710.1 ID=NO03G05710.1|Name=NO03G05710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
ATGCGCACCGGGGCCCGCGTCACGCGAGTTCTATTCGACAAAAATAAACG
TGCTACAGGTGTCGTGTACACCGTGGCAGAATCGGGCGATGTTGACTCCT
CAACTGGCATAAATCGTAACGACCCGCGCCTCGGCAGCCGGGGCCGGGAA
GCCGCTGCCCGTGTAACACTTCATGCCCATGCCACGCGAGAGGTTGTTTT
ATGTGCGGGCGTTTTTTTCACGCCCCATATACTCCTTAAATCAGGTGTCG
GACCTGCTGCGGAGCTCGAGGCCCTGGGCGTACCCGTGGTAGCAAACGTG
TCGGGGGTAGGGAAGCACTTACTGGCCCGAACAAACGTGCTCTTCTTCTA
CGGGAATGGCTCGGTGGTGCCGGAAATGAATCCTTTCGTTCTGCGAGATC
CGGCAACCACGGAGATGTATGATTTAGAGCACCGAGGTCCCTATAGCTTG
GGGGCTCTGGGCATCTACAGCGTTGTCAAGGGCCGTTACCCTGGAGACGA
CGATTACATCCTGTTCATGACGGACGTGATCCCCGAAGTGGCCCCACGCA
TGGTCGCCTTGGGCTGCGCCAATTTGCGGGTTCATGGACCTGGTGGACAG
GTACTGCTGGACCCCACTGATCCCTTAGGGGCAAAACACCCGCGCATCCA
ACTCAACATGGCAGCTGCGGAGGAAGACCGGCGGGCTTTGCGGCACTGCT
TGCGGGATGTGCGGGATATGATGGCCGAACCCATCATGACCACCAATGGA
TTTTACGAAATTTTCCCGACGCATCGACTGGTGGAGGATACAGATAAGGC
CCTGGATCGCTGGATCAGTAGGGGCTACACGTTCTATAGCTGGCACGCGA
CGAGCACGGCCCGAATGGGAGACGTGCTGGATGATCGTATGCGTGTGCAA
GGGGGCGTTCAAGGCTTGCGGGTGGTAGATGCAAGTGCAGTGCCAGACAT
GATCGAGGCTGGGCCAATGGCCACGTTGTTTATGCTGGGGGAGCGGGCCG
CGGATCTGATCAAGGAAGACTATCGGGAAAATACATAG
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protein sequence of NO03G05710.1

>NO03G05710.1-protein ID=NO03G05710.1-protein|Name=NO03G05710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGRE
AAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANV
SGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSL
GALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHGPGGQ
VLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNG
FYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGDVLDDRMRVQ
GGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYRENT*
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mRNA from alignment at chr3:1640988..1642025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05710.1 ID=NO03G05710.1|Name=NO03G05710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at chr3:1640988..1642025+ (Nannochloropsis oceanica)
ATGCGCACCGGGGCCCGCGTCACGCGAGTTCTATTCGACAAAAATAAACG TGCTACAGGTGTCGTGTACACCGTGGCAGAATCGGGCGATGTTGACTCCT CAACTGGCATAAATCGTAACGACCCGCGCCTCGGCAGCCGGGGCCGGGAA GCCGCTGCCCGTGTAACACTTCATGCCCATGCCACGCGAGAGGTTGTTTT ATGTGCGGGCGTTTTTTTCACGCCCCATATACTCCTTAAATCAGGTGTCG GACCTGCTGCGGAGCTCGAGGCCCTGGGCGTACCCGTGGTAGCAAACGTG TCGGGGGTAGGGAAGCACTTACTGGCCCGAACAAACGTGCTCTTCTTCTA CGGGAATGGCTCGGTGGTGCCGGAAATGAATCCTTTCGTTCTGCGAGATC CGGCAACCACGGAGATGTATGATTTAGAGCACCGAGGTCCCTATAGCTTG GGGGCTCTGGGCATCTACAGCGTTGTCAAGGGCCGTTACCCTGGAGACGA CGATTACATCCTGTTCATGACGGACGTGATCCCCGAAGTGGCCCCACGCA TGGTCGCCTTGGGCTGCGCCAATTTGCGGGTTCATGGACCTGGTGGACAG GTACTGCTGGACCCCACTGATCCCTTAGGGGCAAAACACCCGCGCATCCA ACTCAACATGGCAGCTGCGGAGGAAGACCGGCGGGCTTTGCGGCACTGCT TGCGGGATGTGCGGGATATGATGGCCGAACCCATCATGACCACCAATGGA TTTTACGAAATTTTCCCGACGCATCGACTGGTGGAGGATACAGATAAGGC CCTGGATCGCTGGATCAGTAGGGGCTACACGTTCTATAGCTGGCACGCGA CGAGCACGGCCCGAATGGGAGACGTGCTGGATGATCGTATGCGTGTGCAA GGGGGCGTTCAAGGCTTGCGGGTGGTAGATGCAAGTGCAGTGCCAGACAT GATCGAGGCTGGGCCAATGGCCACGTTGTTTATGCTGGGGGAGCGGGCCG CGGATCTGATCAAGGAAGACTATCGGGAAAATACATAG
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Coding sequence (CDS) from alignment at chr3:1640988..1642025+

>NO03G05710.1 ID=NO03G05710.1|Name=NO03G05710.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr3:1640988..1642025+ (Nannochloropsis oceanica)
ATGCGCACCGGGGCCCGCGTCACGCGAGTTCTATTCGACAAAAATAAACG
TGCTACAGGTGTCGTGTACACCGTGGCAGAATCGGGCGATGTTGACTCCT
CAACTGGCATAAATCGTAACGACCCGCGCCTCGGCAGCCGGGGCCGGGAA
GCCGCTGCCCGTGTAACACTTCATGCCCATGCCACGCGAGAGGTTGTTTT
ATGTGCGGGCGTTTTTTTCACGCCCCATATACTCCTTAAATCAGGTGTCG
GACCTGCTGCGGAGCTCGAGGCCCTGGGCGTACCCGTGGTAGCAAACGTG
TCGGGGGTAGGGAAGCACTTACTGGCCCGAACAAACGTGCTCTTCTTCTA
CGGGAATGGCTCGGTGGTGCCGGAAATGAATCCTTTCGTTCTGCGAGATC
CGGCAACCACGGAGATGTATGATTTAGAGCACCGAGGTCCCTATAGCTTG
GGGGCTCTGGGCATCTACAGCGTTGTCAAGGGCCGTTACCCTGGAGACGA
CGATTACATCCTGTTCATGACGGACGTGATCCCCGAAGTGGCCCCACGCA
TGGTCGCCTTGGGCTGCGCCAATTTGCGGGTTCATGGACCTGGTGGACAG
GTACTGCTGGACCCCACTGATCCCTTAGGGGCAAAACACCCGCGCATCCA
ACTCAACATGGCAGCTGCGGAGGAAGACCGGCGGGCTTTGCGGCACTGCT
TGCGGGATGTGCGGGATATGATGGCCGAACCCATCATGACCACCAATGGA
TTTTACGAAATTTTCCCGACGCATCGACTGGTGGAGGATACAGATAAGGC
CCTGGATCGCTGGATCAGTAGGGGCTACACGTTCTATAGCTGGCACGCGA
CGAGCACGGCCCGAATGGGAGACGTGCTGGATGATCGTATGCGTGTGCAA
GGGGGCGTTCAAGGCTTGCGGGTGGTAGATGCAAGTGCAGTGCCAGACAT
GATCGAGGCTGGGCCAATGGCCACGTTGTTTATGCTGGGGGAGCGGGCCG
CGGATCTGATCAAGGAAGACTATCGGGAAAATACATAG
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Synonyms
Publications