NO03G05390, NO03G05390 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G05390 vs. NCBI_GenBank
Match: XP_013896947.1 (hypothetical protein MNEG_10037 [Monoraphidium neglectum] >KIY97927.1 hypothetical protein MNEG_10037 [Monoraphidium neglectum]) HSP 1 Score: 90.1 bits (222), Expect = 1.800e-14 Identity = 84/287 (29.27%), Postives = 134/287 (46.69%), Query Frame = 0 Query: 112 GLSPTMYDKLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQ----HLIVLAAPKAALADALFGARVGKTLFA-KNNVMIAPFEVEGEGTGSAGGEVKGFGAGG----GKAMGMKEALLDAE-AYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAEL 389 GLS LR+EA PFR R FI+GG GAGLG + +L+QSL+ PDA PL++++ N+GV+ LA V + R K+ EK + ++E +K ERAL + F+ V A + E+ + + L A ++ ++ L A K + V+G G G GG+ GA G G +G E+L + + + +P +A W +IEE+ A + KR + + ++ DG++ +G P W +VA+L Sbjct: 7 GLSREQKINLRTEAKAPFRFARTFIFGGLAGGAGLGLIVIIGRLVQSLRGGPDAPPLTESLTNLGVNSAALAILVFLLVRDLRGKEADEK----VTSREEALSRLLVKLGPERALPL--IRFRGVVRPVIVAGDRSFVERSVKAAEPYQATLRARGVSVVPVVYTDDPNAKLKALKKELQQKSSNVKGFGKGGGGGDE---GAAGELPEGAGIGNSESLTEEDRKWRLEPGAVAEWEQWIEEQKEFA----GMERVKRNVWVQIQLDGTVRASDVGTPPWARIVADL 280
BLAST of NO03G05390 vs. NCBI_GenBank
Match: BAJ92733.1 (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 89.4 bits (220), Expect = 3.000e-14 Identity = 82/284 (28.87%), Postives = 132/284 (46.48%), Query Frame = 0 Query: 110 VPGLSPTMYDKLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFEVEGEGTGSAGGEVKGFGAGGGKAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAELTGAKG 394 V G S + K+RSE +PFRS+RMF Y F AGLG A+TQL+ +L + A + +T+ +G+D V A A A+++ +R +K S+ ++ L RE LS L L +VG + R + ELR G L+++A P +A++ +R + V++ PF +G GE A GG+A + A + P + W ++ E+ K+ + + +R DG + G+G P W+ VA+L KG Sbjct: 69 VSGGSSSSMAKIRSEVLSPFRSVRMFFYLAFMASAGLGSLIALTQLLPALGNPARAAGVPETLKGLGID--VAAVAVFAFLY-SRDRKASDAQVARL--------------TREENLSRLKL--RVG-DGGRVVPLSELR--GSARLVIVAGPAEFVAESFRRSRPFLRDLMERGVLVLPFPTDGNAPALEFGE----DADGGEAEDDEVARKSRRLWQLTPVYTSEWAKWLAEQ-----KKMANVTPDSPVYLSLRMDGRVRGSGVGYPPWQAFVAQLPQVKG 321
BLAST of NO03G05390 vs. NCBI_GenBank
Match: XP_002993013.1 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Selaginella moellendorffii] >EFJ05959.1 hypothetical protein SELMODRAFT_162731 [Selaginella moellendorffii]) HSP 1 Score: 88.2 bits (217), Expect = 6.700e-14 Identity = 79/281 (28.11%), Postives = 124/281 (44.13%), Query Frame = 0 Query: 120 KLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFE----VEGEGTGSAGGEVKGFGAGGG--------KAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAEL 389 KL SE PFR +R F Y F + AG+ + V +LI++LQ DA +++T N+ +D + A + +++++ K E +M ++ R LS LP+ G R V +LR G ++LA K ++ AL A + + V++ P E E G VK AG G + +K L + +VA+ A W +I E+ G E+ + IV+R DG I + G G PEW+E+V EL Sbjct: 158 KLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALQGGEDAPSVTETAQNLAIDLAGIVAFVSLFIWDS---KKEETQMSQI--------------TRNETLSRLPVRLGTG----RIVEVVQLR--GITRPVILAGTKESIKGALEKAERYRKDLLQRGVLLIPVEWRKKDETPKKKGFGRSVKAPAAGSGSDDFQKRAQDAALKAVLESEKRFVAEVVSQAEWERWIFEQQESEGVTGGEE-----VFIVLRLDGRIRKSGRGMPEWQELVKEL 410
BLAST of NO03G05390 vs. NCBI_GenBank
Match: XP_002991855.1 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Selaginella moellendorffii] >EFJ07117.1 hypothetical protein SELMODRAFT_134250 [Selaginella moellendorffii]) HSP 1 Score: 88.2 bits (217), Expect = 6.700e-14 Identity = 79/281 (28.11%), Postives = 124/281 (44.13%), Query Frame = 0 Query: 120 KLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFE----VEGEGTGSAGGEVKGFGAGGG--------KAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAEL 389 KL SE PFR +R F Y F + AG+ + V +LI++LQ DA +++T N+ +D + A + +++++ K E +M ++ R LS LP+ G R V +LR G ++LA K ++ AL A + + V++ P E E G VK AG G + +K L + +VA+ A W +I E+ G E+ + IV+R DG I + G G PEW+E+V EL Sbjct: 158 KLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALQGGEDAPSVTETAQNLAIDLAGIVAFVSLFIWDS---KKEETQMSQI--------------TRNETLSRLPVRLGTG----RIVEVVQLR--GITRPVILAGTKESIKGALEKAERYRKDLLQRGVLLIPVEWRKKDETPKKKGFGRSVKAPAAGSGSDDFQKRAQDAALKAVLESEKRFVAEVVSQAEWERWIFEQQESEGVTGGEE-----VFIVLRLDGRIRKSGRGMPEWQELVKEL 410
BLAST of NO03G05390 vs. NCBI_GenBank
Match: OAY64252.1 (Protein LOW PSII ACCUMULATION 1, chloroplastic [Ananas comosus]) HSP 1 Score: 88.2 bits (217), Expect = 6.700e-14 Identity = 76/274 (27.74%), Postives = 122/274 (44.53%), Query Frame = 0 Query: 120 KLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFEVEGEGTGSAGGEVKGFGAGGGKAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAELTGAKG 394 K+RSE +PFRS+RMF Y F LGG A+T+++ L + A L +T+ + +D G + T + EN+ K E ++ +L +RE +LS L L +NE + SV +LR G L++LA P + LAD ++ + V++ PF V+ G F + + K+ L + P W +I+E+ K+ A + + +R DG + G+G P W VA+L KG Sbjct: 143 KIRSEVLSPFRSVRMFFYLAFIASGALGGLIALTRILPGLANSSKAAVLPETLEGLAIDVGAVLLFTFLYTRENKAK---EAQLAKL--------------SREESLSKLKLR----LNEKKIISVSDLR--GKARLVILAGPASFLADCFKRSKPFTDALIERGVLVVPFSVD--------GSAPTFEFDDEEMVEEKKKRL----WQLTPTLTNEWAKWIDEQ-----KRLANVANDSPVYLSLRMDGRVRGSGVGYPPWNAFVAQLPPVKG 376
BLAST of NO03G05390 vs. NCBI_GenBank
Match: XP_024521332.1 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X3 [Selaginella moellendorffii] >XP_024522429.1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X3 [Selaginella moellendorffii]) HSP 1 Score: 88.2 bits (217), Expect = 6.700e-14 Identity = 79/281 (28.11%), Postives = 124/281 (44.13%), Query Frame = 0 Query: 120 KLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFE----VEGEGTGSAGGEVKGFGAGGG--------KAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAEL 389 KL SE PFR +R F Y F + AG+ + V +LI++LQ DA +++T N+ +D + A + +++++ K E +M ++ R LS LP+ G R V +LR G ++LA K ++ AL A + + V++ P E E G VK AG G + +K L + +VA+ A W +I E+ G E+ + IV+R DG I + G G PEW+E+V EL Sbjct: 84 KLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALQGGEDAPSVTETAQNLAIDLAGIVAFVSLFIWDS---KKEETQMSQI--------------TRNETLSRLPVRLGTG----RIVEVVQLR--GITRPVILAGTKESIKGALEKAERYRKDLLQRGVLLIPVEWRKKDETPKKKGFGRSVKAPAAGSGSDDFQKRAQDAALKAVLESEKRFVAEVVSQAEWERWIFEQQESEGVTGGEE-----VFIVLRLDGRIRKSGRGMPEWQELVKEL 336
BLAST of NO03G05390 vs. NCBI_GenBank
Match: XP_024521330.1 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2 [Selaginella moellendorffii]) HSP 1 Score: 88.2 bits (217), Expect = 6.700e-14 Identity = 79/281 (28.11%), Postives = 124/281 (44.13%), Query Frame = 0 Query: 120 KLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFE----VEGEGTGSAGGEVKGFGAGGG--------KAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAEL 389 KL SE PFR +R F Y F + AG+ + V +LI++LQ DA +++T N+ +D + A + +++++ K E +M ++ R LS LP+ G R V +LR G ++LA K ++ AL A + + V++ P E E G VK AG G + +K L + +VA+ A W +I E+ G E+ + IV+R DG I + G G PEW+E+V EL Sbjct: 139 KLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALQGGEDAPSVTETAQNLAIDLAGIVAFVSLFIWDS---KKEETQMSQI--------------TRNETLSRLPVRLGTG----RIVEVVQLR--GITRPVILAGTKESIKGALEKAERYRKDLLQRGVLLIPVEWRKKDETPKKKGFGRSVKAPAAGSGSDDFQKRAQDAALKAVLESEKRFVAEVVSQAEWERWIFEQQESEGVTGGEE-----VFIVLRLDGRIRKSGRGMPEWQELVKEL 391
BLAST of NO03G05390 vs. NCBI_GenBank
Match: XP_024522428.1 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2 [Selaginella moellendorffii]) HSP 1 Score: 88.2 bits (217), Expect = 6.700e-14 Identity = 79/281 (28.11%), Postives = 124/281 (44.13%), Query Frame = 0 Query: 120 KLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFE----VEGEGTGSAGGEVKGFGAGGG--------KAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAEL 389 KL SE PFR +R F Y F + AG+ + V +LI++LQ DA +++T N+ +D + A + +++++ K E +M ++ R LS LP+ G R V +LR G ++LA K ++ AL A + + V++ P E E G VK AG G + +K L + +VA+ A W +I E+ G E+ + IV+R DG I + G G PEW+E+V EL Sbjct: 139 KLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALQGGEDAPSVTETAQNLAIDLAGIVAFVSLFIWDS---KKEETQMSQI--------------TRNETLSRLPVRLGTG----RIVEVVQLR--GITRPVILAGTKESIKGALEKAERYRKDLLQRGVLLIPVEWRKKDETPKKKGFGRSVKAPAAGSGSDDFQKRAQDAALKAVLESEKRFVAEVVSQAEWERWIFEQQESEGVTGGEE-----VFIVLRLDGRIRKSGRGMPEWQELVKEL 391
BLAST of NO03G05390 vs. NCBI_GenBank
Match: PNW81934.1 (hypothetical protein CHLRE_06g266900v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 87.4 bits (215), Expect = 1.100e-13 Identity = 80/285 (28.07%), Postives = 124/285 (43.51%), Query Frame = 0 Query: 120 KLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFEVEGEGTGSAGGEVKGFGAGGGKAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAELT---GAKGTTEFGDAY 402 ++R+EA PFRSLRM + G V AGLG ++ QLI +L ALPL Q N+ ++ A A+ F K R K+ RLT RE L +LP+ G + S+ +LR G +++ A +A +A AL A + K V++ P + + G + L+ + + A+P +A W ++ E++ S + K E+ G+ + +R DG + G G P WR EL G K T F D + Sbjct: 64 QMRAEAEAPFRSLRMVLCGFSVVSAGLGFLISIPQLIGALGGARSALPLEQVEQNLAIN--AAAVGIFAYFFYQDWK---------AREKQIARLT------REETLGSLPIRLSSG----KMLSLNDLR--GTARVVLAAGTRAQVAAALREAEPLREELQKRGVLVVPLPIFDDSEAETAAXXXXXXXGTANRDVLPALTLEDQRWRAEPLRLADWKSWFEQQLSFSAKAKPEN----GLFVGLRLDGRVRSSGSGSPPWRRYALELAPLEGDKAWTGFFDGF 321
BLAST of NO03G05390 vs. NCBI_GenBank
Match: GAQ82303.1 (hypothetical protein KFL_001070090 [Klebsormidium nitens]) HSP 1 Score: 87.0 bits (214), Expect = 1.500e-13 Identity = 79/287 (27.53%), Postives = 122/287 (42.51%), Query Frame = 0 Query: 120 KLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFEVEGEGTGSAGGEVKGFGAGGGKAMGMKEALLDAEA----------------YVAKPAEMATWNAYIEEEFSDA--FKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAEL 389 KL SE PFR +R+F Y G AG+ + +LI +++ ALPL + N+G+D G +A A ++++ R KE ++L + AR+ LS LPL Q G + + +LRE ++L KA+L L A +T V+I P G G + KGF K + D E+ Y A+ A W ++ E+ S A K G + + I++R DG + R G G P+W ++ EL Sbjct: 223 KLISEVQAPFRGVRLFAYAGLSAAAGIATLFTIPRLINAVKGGEGALPLLPELQNIGIDIGGIAVFVALFIWDKR------KENEQLE-----------RIARDETLSRLPLRLQSG----KLVELSQLRE--NTRPLILVGDKASLERTLKKAERYRTELLARGVLICPL-AWGAGAEQLARKPKGFAPLPKKVKKASPTMDDFESRLKAQTAKSIGEVERRYRAEVVSPAEWEQWVREQQSVAKDVKPGED------VYIILRLDGRVRRSGRGMPDWEGILGEL 479 The following BLAST results are available for this feature:
BLAST of NO03G05390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G05390 ID=NO03G05390|Name=NO03G05390|organism=Nannochloropsis oceanica|type=gene|length=1387bpback to top protein sequence of NO03G05390.1 >NO03G05390.1-protein ID=NO03G05390.1-protein|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bpback to top Synonyms
Publications
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