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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1537945..1539331 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05390.1 vs.
Match: EWM30002.1 (Protein of unknown function DUF3493 [Nannochloropsis gaditana]) HSP 1 Score: 504.2 bits (1297), Expect = 3.900e-139 Identity = 280/405 (69.14%), Postives = 325/405 (80.25%), Query Frame = 0
Query: 21 VLLLPLLATAFFLPAAQRIPATSSSSAFPTVLHASSSSKPPKPSPSELSNTVPPPPPSSSPSTATTSATDDIASKDGTDATADEVQTTPVPGLSPTMYDKLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFEVEG--EGTGSAGGEVKGFGAGGGKAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAELTGAKGTTEFGDAYVPPIIATGGAGGRKGGKKKKKK 424
+LLL + +AF P RIP +S+ VLHA+ SK + SEL NTVPPPPP +S ++TD+ + ++ + E + V GLSPTMYDKLRSEATTPFRSLR+FIYGG GVGA LGGYTAVTQL+QSLQHRPDALPLSQ+I+NVGVDFGV AAA AWVFENR+K+V++KEMQ LRAKEPFRLTFDMK+ARERALS LP+TF+VG+NETR+ASVK+LREKGGQHLIVLAAPK LADALFGARVGKTLFAKNNVMIAPF ++G + TG VKGFG KA GMKEA++D+EAYVAKPA+ A+W YI+EE DA +QGNE AR GIGIVMRKDGSIIRRG+GQP+W+EVVAELTGAKGT+EFGDAYVPPI GAGG KGGKKK+KK
Sbjct: 103 LLLLAVSCSAFLFPIPSRIPTSSAQ-----VLHATKKSKQ---TFSELGNTVPPPPPPTSTPPPFATSTDETSFEE--EEMEAEEENAAVTGLSPTMYDKLRSEATTPFRSLRLFIYGGIGVGASLGGYTAVTQLVQSLQHRPDALPLSQSILNVGVDFGVAAAAAGAWVFENRLKQVTDKEMQALRAKEPFRLTFDMKKARERALSGLPVTFKVGLNETRSASVKDLREKGGQHLIVLAAPKGELADALFGARVGKTLFAKNNVMIAPFVIQGGNDKTGEEAIGVKGFGGMSDKATGMKEAMIDSEAYVAKPADSASWATYIDEELEDAVRQGNEKARNTGIGIVMRKDGSIIRRGVGQPDWKEVVAELTGAKGTSEFGDAYVPPI----GAGGGKGGKKKRKK 493
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05390.1 ID=NO03G05390.1|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp AACAGGTCAGTCATGATGCCAACCCCTCCATCACATCGACGTCATCCTCT CCCCAGCGTGCTCCTCCTCTTTGTCCTCCTCCTTCCGCTGCTGGCCACTG CCTTCTTCCTCCCGGCTGCCCAGAGAATACCTGCCACATCATCGTCTTCT GCCTTTCCTACTGTCTTGCATGCGTCGTCGTCCTCCAAGCCGCCAAAGCC CTCTCCGTCTGAGTTGAGCAACACCGTTCCCCCACCTCCTCCCTCCTCTT CACCCAGCACCGCCACCACAAGCGCAACAGACGACATTGCCAGCAAAGAT GGTACGGATGCTACAGCAGACGAAGTCCAGACCACACCCGTCCCTGGTTT GTCCCCCACCATGTACGACAAGCTTCGGAGCGAGGCCACCACGCCCTTCC GCTCTCTTCGCATGTTCATCTACGGCGGCTTTGGCGTGGGCGCGGGTCTA GGCGGGTACACCGCCGTCACGCAGCTAATCCAGTCTCTGCAGCACCGTCC CGATGCCTTGCCCTTGTCGCAAACGATCGTGAACGTCGGTGTTGACTTCG GGGTGTTGGCGGCGGCCACAGCTGCCTGGGTCTTTGAGAACCGCATTAAG AAGGTGTCGGAGAAGGAAATGCAGGAATTGCGGGCGAAAGAGCCGTTTCG GTTAACCTTTGACATGAAGCAAGCGCGAGAACGAGCATTGAGTGCCTTGC CCTTGACATTTCAGGTGGGCGTGAATGAGACGAGGACGGCGTCGGTGAAA GAGCTGCGGGAGAAAGGCGGGCAGCATTTGATAGTCCTTGCGGCGCCCAA AGCCGCGTTGGCCGATGCACTTTTTGGGGCTCGAGTGGGCAAGACGCTTT TTGCTAAGAACAATGTTATGATCGCGCCGTTTGAGGTGGAGGGGGAGGGG ACAGGGAGTGCGGGAGGGGAGGTGAAGGGCTTTGGAGCAGGGGGAGGGAA GGCAATGGGGATGAAGGAGGCCTTGTTGGATGCGGAGGCATATGTGGCCA AGCCTGCCGAGATGGCGACATGGAATGCATACATTGAGGAGGAGTTTTCG GATGCCTTCAAGCAAGGGAACGAAGATGCACGGAAACGGGGAATTGGCAT TGTGATGCGCAAGGACGGGAGCATCATACGGAGGGGGTTGGGGCAGCCGG AGTGGAGGGAGGTGGTGGCCGAGCTGACGGGTGCCAAGGGCACGACTGAA TTTGGGGATGCTTATGTCCCTCCTATTATTGCGACAGGCGGCGCGGGCGG GAGAAAAGGCGGGAAGAAGAAGAAGAAGAAGGCATAACACGGAGTGGGTC ATGTCGTAAATTACCATTTTGTTTTTGTGATTGTGTATTTAGTTACGGAG GAAAAGAAACAAGTAAAAGCTGAGAAGAGTTGGAGAA back to topprotein sequence of NO03G05390.1 >NO03G05390.1-protein ID=NO03G05390.1-protein|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp MMPTPPSHRRHPLPSVLLLFVLLLPLLATAFFLPAAQRIPATSSSSAFPT VLHASSSSKPPKPSPSELSNTVPPPPPSSSPSTATTSATDDIASKDGTDA TADEVQTTPVPGLSPTMYDKLRSEATTPFRSLRMFIYGGFGVGAGLGGYT AVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSE KEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELRE KGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFEVEGEGTGSA GGEVKGFGAGGGKAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFK QGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAELTGAKGTTEFGDA YVPPIIATGGAGGRKGGKKKKKKA* back to topmRNA from alignment at chr3:1537945..1539331- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05390.1 ID=NO03G05390.1|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp|location=Sequence derived from alignment at chr3:1537945..1539331- (Nannochloropsis oceanica) AACAGGTCAGTCATGATGCCAACCCCTCCATCACATCGACGTCATCCTCT
CCCCAGCGTGCTCCTCCTCTTTGTCCTCCTCCTTCCGCTGCTGGCCACTG
CCTTCTTCCTCCCGGCTGCCCAGAGAATACCTGCCACATCATCGTCTTCT
GCCTTTCCTACTGTCTTGCATGCGTCGTCGTCCTCCAAGCCGCCAAAGCC
CTCTCCGTCTGAGTTGAGCAACACCGTTCCCCCACCTCCTCCCTCCTCTT
CACCCAGCACCGCCACCACAAGCGCAACAGACGACATTGCCAGCAAAGAT
GGTACGGATGCTACAGCAGACGAAGTCCAGACCACACCCGTCCCTGGTTT
GTCCCCCACCATGTACGACAAGCTTCGGAGCGAGGCCACCACGCCCTTCC
GCTCTCTTCGCATGTTCATCTACGGCGGCTTTGGCGTGGGCGCGGGTCTA
GGCGGGTACACCGCCGTCACGCAGCTAATCCAGTCTCTGCAGCACCGTCC
CGATGCCTTGCCCTTGTCGCAAACGATCGTGAACGTCGGTGTTGACTTCG
GGGTGTTGGCGGCGGCCACAGCTGCCTGGGTCTTTGAGAACCGCATTAAG
AAGGTGTCGGAGAAGGAAATGCAGGAATTGCGGGCGAAAGAGCCGTTTCG
GTTAACCTTTGACATGAAGCAAGCGCGAGAACGAGCATTGAGTGCCTTGC
CCTTGACATTTCAGGTGGGCGTGAATGAGACGAGGACGGCGTCGGTGAAA
GAGCTGCGGGAGAAAGGCGGGCAGCATTTGATAGTCCTTGCGGCGCCCAA
AGCCGCGTTGGCCGATGCACTTTTTGGGGCTCGAGTGGGCAAGACGCTTT
TTGCTAAGAACAATGTTATGATCGCGCCGTTTGAGGTGGAGGGGGAGGGG
ACAGGGAGTGCGGGAGGGGAGGTGAAGGGCTTTGGAGCAGGGGGAGGGAA
GGCAATGGGGATGAAGGAGGCCTTGTTGGATGCGGAGGCATATGTGGCCA
AGCCTGCCGAGATGGCGACATGGAATGCATACATTGAGGAGGAGTTTTCG
GATGCCTTCAAGCAAGGGAACGAAGATGCACGGAAACGGGGAATTGGCAT
TGTGATGCGCAAGGACGGGAGCATCATACGGAGGGGGTTGGGGCAGCCGG
AGTGGAGGGAGGTGGTGGCCGAGCTGACGGGTGCCAAGGGCACGACTGAA
TTTGGGGATGCTTATGTCCCTCCTATTATTGCGACAGGCGGCGCGGGCGG
GAGAAAAGGCGGGAAGAAGAAGAAGAAGAAGGCATAACACGGAGTGGGTC
ATGTCGTAAATTACCATTTTGTTTTTGTGATTGTGTATTTAGTTACGGAG
GAAAAGAAACAAGTAAAAGCTGAGAAGAGTTGGAGAA back to topCoding sequence (CDS) from alignment at chr3:1537945..1539331- >NO03G05390.1 ID=NO03G05390.1|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr3:1537945..1539331- (Nannochloropsis oceanica) ATGATGCCAACCCCTCCATCACATCGACGTCATCCTCTCCCCAGCGTGCT CCTCCTCTTTGTCCTCCTCCTTCCGCTGCTGGCCACTGCCTTCTTCCTCC CGGCTGCCCAGAGAATACCTGCCACATCATCGTCTTCTGCCTTTCCTACT GTCTTGCATGCGTCGTCGTCCTCCAAGCCGCCAAAGCCCTCTCCGTCTGA GTTGAGCAACACCGTTCCCCCACCTCCTCCCTCCTCTTCACCCAGCACCG CCACCACAAGCGCAACAGACGACATTGCCAGCAAAGATGGTACGGATGCT ACAGCAGACGAAGTCCAGACCACACCCGTCCCTGGTTTGTCCCCCACCAT GTACGACAAGCTTCGGAGCGAGGCCACCACGCCCTTCCGCTCTCTTCGCA TGTTCATCTACGGCGGCTTTGGCGTGGGCGCGGGTCTAGGCGGGTACACC GCCGTCACGCAGCTAATCCAGTCTCTGCAGCACCGTCCCGATGCCTTGCC CTTGTCGCAAACGATCGTGAACGTCGGTGTTGACTTCGGGGTGTTGGCGG CGGCCACAGCTGCCTGGGTCTTTGAGAACCGCATTAAGAAGGTGTCGGAG AAGGAAATGCAGGAATTGCGGGCGAAAGAGCCGTTTCGGTTAACCTTTGA CATGAAGCAAGCGCGAGAACGAGCATTGAGTGCCTTGCCCTTGACATTTC AGGTGGGCGTGAATGAGACGAGGACGGCGTCGGTGAAAGAGCTGCGGGAG AAAGGCGGGCAGCATTTGATAGTCCTTGCGGCGCCCAAAGCCGCGTTGGC CGATGCACTTTTTGGGGCTCGAGTGGGCAAGACGCTTTTTGCTAAGAACA ATGTTATGATCGCGCCGTTTGAGGTGGAGGGGGAGGGGACAGGGAGTGCG GGAGGGGAGGTGAAGGGCTTTGGAGCAGGGGGAGGGAAGGCAATGGGGAT GAAGGAGGCCTTGTTGGATGCGGAGGCATATGTGGCCAAGCCTGCCGAGA TGGCGACATGGAATGCATACATTGAGGAGGAGTTTTCGGATGCCTTCAAG CAAGGGAACGAAGATGCACGGAAACGGGGAATTGGCATTGTGATGCGCAA GGACGGGAGCATCATACGGAGGGGGTTGGGGCAGCCGGAGTGGAGGGAGG TGGTGGCCGAGCTGACGGGTGCCAAGGGCACGACTGAATTTGGGGATGCT TATGTCCCTCCTATTATTGCGACAGGCGGCGCGGGCGGGAGAAAAGGCGG GAAGAAGAAGAAGAAGAAGGCATAA back to top
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