NO03G05390.1, NO03G05390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05390.1
Unique NameNO03G05390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1387
Alignment locationchr3:1537945..1539331 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1537945..1539331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G05390.1 vs.
Match: EWM30002.1 (Protein of unknown function DUF3493 [Nannochloropsis gaditana])

HSP 1 Score: 504.2 bits (1297), Expect = 3.900e-139
Identity = 280/405 (69.14%), Postives = 325/405 (80.25%), Query Frame = 0
Query:   21 VLLLPLLATAFFLPAAQRIPATSSSSAFPTVLHASSSSKPPKPSPSELSNTVPPPPPSSSPSTATTSATDDIASKDGTDATADEVQTTPVPGLSPTMYDKLRSEATTPFRSLRMFIYGGFGVGAGLGGYTAVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSEKEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELREKGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFEVEG--EGTGSAGGEVKGFGAGGGKAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFKQGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAELTGAKGTTEFGDAYVPPIIATGGAGGRKGGKKKKKK 424
            +LLL +  +AF  P   RIP +S+      VLHA+  SK    + SEL NTVPPPPP +S      ++TD+ + ++  +    E +   V GLSPTMYDKLRSEATTPFRSLR+FIYGG GVGA LGGYTAVTQL+QSLQHRPDALPLSQ+I+NVGVDFGV AAA  AWVFENR+K+V++KEMQ LRAKEPFRLTFDMK+ARERALS LP+TF+VG+NETR+ASVK+LREKGGQHLIVLAAPK  LADALFGARVGKTLFAKNNVMIAPF ++G  + TG     VKGFG    KA GMKEA++D+EAYVAKPA+ A+W  YI+EE  DA +QGNE AR  GIGIVMRKDGSIIRRG+GQP+W+EVVAELTGAKGT+EFGDAYVPPI    GAGG KGGKKK+KK
Sbjct:  103 LLLLAVSCSAFLFPIPSRIPTSSAQ-----VLHATKKSKQ---TFSELGNTVPPPPPPTSTPPPFATSTDETSFEE--EEMEAEEENAAVTGLSPTMYDKLRSEATTPFRSLRLFIYGGIGVGASLGGYTAVTQLVQSLQHRPDALPLSQSILNVGVDFGVAAAAAGAWVFENRLKQVTDKEMQALRAKEPFRLTFDMKKARERALSGLPVTFKVGLNETRSASVKDLREKGGQHLIVLAAPKGELADALFGARVGKTLFAKNNVMIAPFVIQGGNDKTGEEAIGVKGFGGMSDKATGMKEAMIDSEAYVAKPADSASWATYIDEELEDAVRQGNEKARNTGIGIVMRKDGSIIRRGVGQPDWKEVVAELTGAKGTSEFGDAYVPPI----GAGGGKGGKKKRKK 493          
The following BLAST results are available for this feature:
BLAST of NO03G05390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30002.13.900e-13969.14Protein of unknown function DUF3493 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05390NO03G05390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05390.1NO03G05390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05390.1.cds1NO03G05390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05390.1 ID=NO03G05390.1|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
AACAGGTCAGTCATGATGCCAACCCCTCCATCACATCGACGTCATCCTCT
CCCCAGCGTGCTCCTCCTCTTTGTCCTCCTCCTTCCGCTGCTGGCCACTG
CCTTCTTCCTCCCGGCTGCCCAGAGAATACCTGCCACATCATCGTCTTCT
GCCTTTCCTACTGTCTTGCATGCGTCGTCGTCCTCCAAGCCGCCAAAGCC
CTCTCCGTCTGAGTTGAGCAACACCGTTCCCCCACCTCCTCCCTCCTCTT
CACCCAGCACCGCCACCACAAGCGCAACAGACGACATTGCCAGCAAAGAT
GGTACGGATGCTACAGCAGACGAAGTCCAGACCACACCCGTCCCTGGTTT
GTCCCCCACCATGTACGACAAGCTTCGGAGCGAGGCCACCACGCCCTTCC
GCTCTCTTCGCATGTTCATCTACGGCGGCTTTGGCGTGGGCGCGGGTCTA
GGCGGGTACACCGCCGTCACGCAGCTAATCCAGTCTCTGCAGCACCGTCC
CGATGCCTTGCCCTTGTCGCAAACGATCGTGAACGTCGGTGTTGACTTCG
GGGTGTTGGCGGCGGCCACAGCTGCCTGGGTCTTTGAGAACCGCATTAAG
AAGGTGTCGGAGAAGGAAATGCAGGAATTGCGGGCGAAAGAGCCGTTTCG
GTTAACCTTTGACATGAAGCAAGCGCGAGAACGAGCATTGAGTGCCTTGC
CCTTGACATTTCAGGTGGGCGTGAATGAGACGAGGACGGCGTCGGTGAAA
GAGCTGCGGGAGAAAGGCGGGCAGCATTTGATAGTCCTTGCGGCGCCCAA
AGCCGCGTTGGCCGATGCACTTTTTGGGGCTCGAGTGGGCAAGACGCTTT
TTGCTAAGAACAATGTTATGATCGCGCCGTTTGAGGTGGAGGGGGAGGGG
ACAGGGAGTGCGGGAGGGGAGGTGAAGGGCTTTGGAGCAGGGGGAGGGAA
GGCAATGGGGATGAAGGAGGCCTTGTTGGATGCGGAGGCATATGTGGCCA
AGCCTGCCGAGATGGCGACATGGAATGCATACATTGAGGAGGAGTTTTCG
GATGCCTTCAAGCAAGGGAACGAAGATGCACGGAAACGGGGAATTGGCAT
TGTGATGCGCAAGGACGGGAGCATCATACGGAGGGGGTTGGGGCAGCCGG
AGTGGAGGGAGGTGGTGGCCGAGCTGACGGGTGCCAAGGGCACGACTGAA
TTTGGGGATGCTTATGTCCCTCCTATTATTGCGACAGGCGGCGCGGGCGG
GAGAAAAGGCGGGAAGAAGAAGAAGAAGAAGGCATAACACGGAGTGGGTC
ATGTCGTAAATTACCATTTTGTTTTTGTGATTGTGTATTTAGTTACGGAG
GAAAAGAAACAAGTAAAAGCTGAGAAGAGTTGGAGAA
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protein sequence of NO03G05390.1

>NO03G05390.1-protein ID=NO03G05390.1-protein|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MMPTPPSHRRHPLPSVLLLFVLLLPLLATAFFLPAAQRIPATSSSSAFPT
VLHASSSSKPPKPSPSELSNTVPPPPPSSSPSTATTSATDDIASKDGTDA
TADEVQTTPVPGLSPTMYDKLRSEATTPFRSLRMFIYGGFGVGAGLGGYT
AVTQLIQSLQHRPDALPLSQTIVNVGVDFGVLAAATAAWVFENRIKKVSE
KEMQELRAKEPFRLTFDMKQARERALSALPLTFQVGVNETRTASVKELRE
KGGQHLIVLAAPKAALADALFGARVGKTLFAKNNVMIAPFEVEGEGTGSA
GGEVKGFGAGGGKAMGMKEALLDAEAYVAKPAEMATWNAYIEEEFSDAFK
QGNEDARKRGIGIVMRKDGSIIRRGLGQPEWREVVAELTGAKGTTEFGDA
YVPPIIATGGAGGRKGGKKKKKKA*
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mRNA from alignment at chr3:1537945..1539331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05390.1 ID=NO03G05390.1|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp|location=Sequence derived from alignment at chr3:1537945..1539331- (Nannochloropsis oceanica)
AACAGGTCAGTCATGATGCCAACCCCTCCATCACATCGACGTCATCCTCT CCCCAGCGTGCTCCTCCTCTTTGTCCTCCTCCTTCCGCTGCTGGCCACTG CCTTCTTCCTCCCGGCTGCCCAGAGAATACCTGCCACATCATCGTCTTCT GCCTTTCCTACTGTCTTGCATGCGTCGTCGTCCTCCAAGCCGCCAAAGCC CTCTCCGTCTGAGTTGAGCAACACCGTTCCCCCACCTCCTCCCTCCTCTT CACCCAGCACCGCCACCACAAGCGCAACAGACGACATTGCCAGCAAAGAT GGTACGGATGCTACAGCAGACGAAGTCCAGACCACACCCGTCCCTGGTTT GTCCCCCACCATGTACGACAAGCTTCGGAGCGAGGCCACCACGCCCTTCC GCTCTCTTCGCATGTTCATCTACGGCGGCTTTGGCGTGGGCGCGGGTCTA GGCGGGTACACCGCCGTCACGCAGCTAATCCAGTCTCTGCAGCACCGTCC CGATGCCTTGCCCTTGTCGCAAACGATCGTGAACGTCGGTGTTGACTTCG GGGTGTTGGCGGCGGCCACAGCTGCCTGGGTCTTTGAGAACCGCATTAAG AAGGTGTCGGAGAAGGAAATGCAGGAATTGCGGGCGAAAGAGCCGTTTCG GTTAACCTTTGACATGAAGCAAGCGCGAGAACGAGCATTGAGTGCCTTGC CCTTGACATTTCAGGTGGGCGTGAATGAGACGAGGACGGCGTCGGTGAAA GAGCTGCGGGAGAAAGGCGGGCAGCATTTGATAGTCCTTGCGGCGCCCAA AGCCGCGTTGGCCGATGCACTTTTTGGGGCTCGAGTGGGCAAGACGCTTT TTGCTAAGAACAATGTTATGATCGCGCCGTTTGAGGTGGAGGGGGAGGGG ACAGGGAGTGCGGGAGGGGAGGTGAAGGGCTTTGGAGCAGGGGGAGGGAA GGCAATGGGGATGAAGGAGGCCTTGTTGGATGCGGAGGCATATGTGGCCA AGCCTGCCGAGATGGCGACATGGAATGCATACATTGAGGAGGAGTTTTCG GATGCCTTCAAGCAAGGGAACGAAGATGCACGGAAACGGGGAATTGGCAT TGTGATGCGCAAGGACGGGAGCATCATACGGAGGGGGTTGGGGCAGCCGG AGTGGAGGGAGGTGGTGGCCGAGCTGACGGGTGCCAAGGGCACGACTGAA TTTGGGGATGCTTATGTCCCTCCTATTATTGCGACAGGCGGCGCGGGCGG GAGAAAAGGCGGGAAGAAGAAGAAGAAGAAGGCATAACACGGAGTGGGTC ATGTCGTAAATTACCATTTTGTTTTTGTGATTGTGTATTTAGTTACGGAG GAAAAGAAACAAGTAAAAGCTGAGAAGAGTTGGAGAA
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Coding sequence (CDS) from alignment at chr3:1537945..1539331-

>NO03G05390.1 ID=NO03G05390.1|Name=NO03G05390.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr3:1537945..1539331- (Nannochloropsis oceanica)
ATGATGCCAACCCCTCCATCACATCGACGTCATCCTCTCCCCAGCGTGCT
CCTCCTCTTTGTCCTCCTCCTTCCGCTGCTGGCCACTGCCTTCTTCCTCC
CGGCTGCCCAGAGAATACCTGCCACATCATCGTCTTCTGCCTTTCCTACT
GTCTTGCATGCGTCGTCGTCCTCCAAGCCGCCAAAGCCCTCTCCGTCTGA
GTTGAGCAACACCGTTCCCCCACCTCCTCCCTCCTCTTCACCCAGCACCG
CCACCACAAGCGCAACAGACGACATTGCCAGCAAAGATGGTACGGATGCT
ACAGCAGACGAAGTCCAGACCACACCCGTCCCTGGTTTGTCCCCCACCAT
GTACGACAAGCTTCGGAGCGAGGCCACCACGCCCTTCCGCTCTCTTCGCA
TGTTCATCTACGGCGGCTTTGGCGTGGGCGCGGGTCTAGGCGGGTACACC
GCCGTCACGCAGCTAATCCAGTCTCTGCAGCACCGTCCCGATGCCTTGCC
CTTGTCGCAAACGATCGTGAACGTCGGTGTTGACTTCGGGGTGTTGGCGG
CGGCCACAGCTGCCTGGGTCTTTGAGAACCGCATTAAGAAGGTGTCGGAG
AAGGAAATGCAGGAATTGCGGGCGAAAGAGCCGTTTCGGTTAACCTTTGA
CATGAAGCAAGCGCGAGAACGAGCATTGAGTGCCTTGCCCTTGACATTTC
AGGTGGGCGTGAATGAGACGAGGACGGCGTCGGTGAAAGAGCTGCGGGAG
AAAGGCGGGCAGCATTTGATAGTCCTTGCGGCGCCCAAAGCCGCGTTGGC
CGATGCACTTTTTGGGGCTCGAGTGGGCAAGACGCTTTTTGCTAAGAACA
ATGTTATGATCGCGCCGTTTGAGGTGGAGGGGGAGGGGACAGGGAGTGCG
GGAGGGGAGGTGAAGGGCTTTGGAGCAGGGGGAGGGAAGGCAATGGGGAT
GAAGGAGGCCTTGTTGGATGCGGAGGCATATGTGGCCAAGCCTGCCGAGA
TGGCGACATGGAATGCATACATTGAGGAGGAGTTTTCGGATGCCTTCAAG
CAAGGGAACGAAGATGCACGGAAACGGGGAATTGGCATTGTGATGCGCAA
GGACGGGAGCATCATACGGAGGGGGTTGGGGCAGCCGGAGTGGAGGGAGG
TGGTGGCCGAGCTGACGGGTGCCAAGGGCACGACTGAATTTGGGGATGCT
TATGTCCCTCCTATTATTGCGACAGGCGGCGCGGGCGGGAGAAAAGGCGG
GAAGAAGAAGAAGAAGAAGGCATAA
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Synonyms
Publications