NO03G05290, NO03G05290 (gene) Nannochloropsis oceanica

Overview
NameNO03G05290
Unique NameNO03G05290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1755
Alignment locationchr3:1507410..1509164 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1507410..1509164 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO03G05290 vs. NCBI_GenBank
Match: EWM29969.1 (hypothetical protein Naga_100200g11 [Nannochloropsis gaditana])

HSP 1 Score: 515.8 bits (1327), Expect = 1.400e-142
Identity = 244/329 (74.16%), Postives = 280/329 (85.11%), Query Frame = 0 
Query:   96 PWKNVILALGLALILTFTVKGYDAFNDMEDNGFALVAATAPGSHWGNWRSLTRCDCKAFQQCTDALSKAKTLKDTRLGRFFQLATCKLATGQDEDCQLRDKELKSGLTRFRFFGPELVLRLRLAADFKWWVRLGCYFLMCCALLEILFYLIETTQLRWQRKGAMKQEGSREWWEKEVLVWLFLIGWHEVLSYAVHYVYNDQHTMCDGIGLFFRDAMALYTLIQVGMRAVVKRGPNAHRVWLVQAEQKYAALQGKPLWVQVVRDPRIGAFHLFSGLELKVTEDPVGVISGLVNTLLSVAERVLRYAPHEVQKLVAMVPYLGGRLVVLGVS 425
            PWKNV +A G+AL+L+ TVKG+ +F +MEDNGFALVAATAPGSHWGNWRS+TRCDCKAFQQCT AL+KAKTL  TR+GRF QLATC+LATGQDEDCQL DKELK GLTRFRFF P+LVLRLRLAADF+WWVRLGCYFLM CALLEI+FYL+ETT+LRW R+  + ++    WWEKE+ VWLFL+ WHE LSY VHYVY+D HTMCDG+GLFFRDAMALYTLIQV  RAVVKRGPNAHR WL+QAEQKY ALQ +P WVQVVRDPR+GAFH FSG+ELK+TEDPVG +S LV TL S+A++VL + P +VQ   A+VP LGG   V G S
Sbjct:  102 PWKNVFIAFGVALVLSVTVKGFGSFTNMEDNGFALVAATAPGSHWGNWRSMTRCDCKAFQQCTAALAKAKTLSATRVGRFIQLATCQLATGQDEDCQLHDKELKRGLTRFRFFFPDLVLRLRLAADFRWWVRLGCYFLMSCALLEIIFYLVETTRLRWHRRRTLGEDPG-SWWEKEISVWLFLVVWHEALSYLVHYVYSDSHTMCDGVGLFFRDAMALYTLIQVFTRAVVKRGPNAHRAWLLQAEQKYLALQHRPWWVQVVRDPRVGAFHTFSGVELKITEDPVGFVSNLVLTLTSIAKKVLSWLPSDVQ---ALVPGLGGGRPVEGSS 426
The following BLAST results are available for this feature:
BLAST of NO03G05290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29969.11.400e-14274.16hypothetical protein Naga_100200g11 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005342NSK005342Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05290.1NO03G05290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573285gene_1743Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100200g11gene672Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05290.1NO03G05290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05290 ID=NO03G05290|Name=NO03G05290|organism=Nannochloropsis oceanica|type=gene|length=1755bp
CTGTATGCATGTTGCCGAAAATAAAGATGTGGCCGCCCTCTTTCTTTTGT
TCGTGTTGGTGGTGAAGAACCCAGATTAGAACAAAAACAAGCGCAAGCAT
TTATTCATTTGCGAATGTAGGCGTATAATGCTAAGTTATTTTGCCCACAA
GCTCATGTACTTCTGTTGGGAGCCAGAGTAAATTCATCAACAGGGGAATC
AACAACCCAACGATAGCATTGTAGCACAGTATACCCCAAGCTTCCCTGCG
ATCCGTCTCCTCTCACCCTTCTGAGGGGAATTCAAAACCAATCGCACGCA
CTTCATACAGGAAGTTGCCATTGGCTATTGAAACAAGCGTCCAGCCCGCC
AGGCAGCCATGATGAGGCGGTTGCGCCGCAAGACCTCCGACATGGAAGCG
GCGCGCACTGCATCCTCGTCTTCACCCACCACCTCCGCCTCTACCTCGCC
CGTGAAGCGCCGTGGCAATGAGATGAAAAAATCTTCCGCCGGGCAAGACT
TGGATGCCCCCTCGTCCTCCGCTGCCCCCTCATTGTCTGCCTCGACCGGA
AGTAGCAGTACAACCAAGGCGGAGAAGCGTTCCATAAACTCTCCCCCTCA
TCACAAATCTCGTGCTAATAACACGGCAGAGTCCTGGTGGTGGCCCTGGA
AGAATGTTATTCTAGCCCTTGGTCTTGCCTTGATTCTGACTTTCACTGTT
AAGGGCTACGATGCATTTAATGACATGGAAGACAATGGCTTCGCTCTAGT
GGCCGCAACGGCGCCGGGTTCCCATTGGGGCAATTGGCGCAGCCTGACCC
GATGTGATTGCAAGGCCTTTCAACAGTGCACCGATGCCTTGTCCAAGGCC
AAGACCCTGAAGGATACTCGCCTGGGTCGTTTTTTCCAGCTTGCCACCTG
TAAGCTGGCCACGGGACAGGACGAGGACTGTCAATTGAGGGACAAGGAGC
TCAAGAGTGGCTTAACCCGCTTTCGGTTCTTCGGGCCCGAGCTCGTGCTT
CGTTTGCGGCTGGCGGCGGATTTTAAGTGGTGGGTCCGGCTGGGTTGTTA
TTTCCTCATGTGTTGCGCATTGCTTGAGATCCTCTTCTATTTGATTGAAA
CGACGCAGTTGCGGTGGCAACGGAAGGGGGCCATGAAGCAAGAGGGCTCA
AGGGAGTGGTGGGAGAAGGAGGTATTGGTATGGTTGTTCCTGATAGGGTG
GCACGAGGTCTTGAGCTACGCAGTTCATTACGTGTATAATGACCAGCATA
CCATGTGTGATGGGATCGGGTTGTTCTTTCGGGATGCCATGGCTCTGTAC
ACTCTAATTCAAGTGGGCATGCGCGCTGTTGTCAAGCGCGGTCCGAATGC
GCATCGAGTGTGGCTCGTCCAAGCGGAGCAGAAGTACGCGGCTTTGCAGG
GGAAGCCACTATGGGTGCAGGTTGTGCGAGATCCCAGGATTGGGGCGTTT
CATTTGTTTAGCGGCCTGGAGCTGAAGGTGACTGAGGACCCGGTAGGGGT
GATATCCGGGCTCGTAAATACATTGTTGAGCGTGGCCGAGAGGGTGTTGA
GGTATGCGCCGCACGAGGTGCAGAAGCTTGTGGCGATGGTGCCATATTTG
GGGGGGAGGCTAGTGGTGCTGGGAGTCTCGGGGACTGTGCCGGGGCAAGT
GGAAGGGAGTAGTAGTAGAAGGAAGGATGAGTAAAAGAGGTGGGGGAGGG
GTTGACGAGAGACCTCAACGAAAGAAGTGAAGTAAACAAAAAAATATACA
CGTGA
back to top

protein sequence of NO03G05290.1

>NO03G05290.1-protein ID=NO03G05290.1-protein|Name=NO03G05290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MMRRLRRKTSDMEAARTASSSSPTTSASTSPVKRRGNEMKKSSAGQDLDA
PSSSAAPSLSASTGSSSTTKAEKRSINSPPHHKSRANNTAESWWWPWKNV
ILALGLALILTFTVKGYDAFNDMEDNGFALVAATAPGSHWGNWRSLTRCD
CKAFQQCTDALSKAKTLKDTRLGRFFQLATCKLATGQDEDCQLRDKELKS
GLTRFRFFGPELVLRLRLAADFKWWVRLGCYFLMCCALLEILFYLIETTQ
LRWQRKGAMKQEGSREWWEKEVLVWLFLIGWHEVLSYAVHYVYNDQHTMC
DGIGLFFRDAMALYTLIQVGMRAVVKRGPNAHRVWLVQAEQKYAALQGKP
LWVQVVRDPRIGAFHLFSGLELKVTEDPVGVISGLVNTLLSVAERVLRYA
PHEVQKLVAMVPYLGGRLVVLGVSGTVPGQVEGSSSRRKDE*
back to top
Synonyms
Publications