NO03G05230, NO03G05230 (gene) Nannochloropsis oceanica

Overview
NameNO03G05230
Unique NameNO03G05230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length985
Alignment locationchr3:1494183..1495167 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein L38
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1494183..1495167 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR002675Ribosomal_L38e
Homology
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: XP_009033600.1 (ribosomal protein L38 [Aureococcus anophagefferens] >EGB11207.1 ribosomal protein L38 [Aureococcus anophagefferens])

HSP 1 Score: 114.8 bits (286), Expect = 1.100e-22
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPKEI DIRDFLQKARR+DAKSVK+KK+    KFKIRCSRYLYTL VSD EKA+KLTQSLPPGLQRKDI
Sbjct:    1 MPKEISDIRDFLQKARRRDAKSVKIKKTKGVVKFKIRCSRYLYTLRVSDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: CCI47831.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 112.5 bits (280), Expect = 5.500e-22
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPKEI DIRDFLQKARRKDA+SVK+KK+    KFKIRCS+YLYTL V+D EKA+KLTQSLPPGLQRKDI
Sbjct:    1 MPKEITDIRDFLQKARRKDARSVKIKKTDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: XP_008908203.1 (60S ribosomal protein L38 [Phytophthora parasitica INRA-310] >AAY43415.1 ribosomal protein L38 [Phytophthora infestans] >ETI30177.1 60S ribosomal protein L38 [Phytophthora parasitica P1569] >ETK83048.1 60S ribosomal protein L38 [Phytophthora parasitica] >ETL36436.1 60S ribosomal protein L38 [Phytophthora parasitica] >ETL89648.1 60S ribosomal protein L38 [Phytophthora parasitica] >ETM42924.1 60S ribosomal protein L38 [Phytophthora parasitica] >ETN06711.1 60S ribosomal protein L38 [Phytophthora parasitica INRA-310] >ETO72217.1 60S ribosomal protein L38 [Phytophthora parasitica P1976] >ETP12766.1 60S ribosomal protein L38 [Phytophthora parasitica CJ01A1] >ETP41433.1 60S ribosomal protein L38 [Phytophthora parasitica P10297] >POM68634.1 60S ribosomal protein L38 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 112.5 bits (280), Expect = 5.500e-22
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPK+I DIRDFLQKARRKDA+SVK+KKS    KFKIRCS+YLYTL V+D EKA+KLTQSLPPGLQRKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: OQR86808.1 (60S ribosomal protein L38 [Achlya hypogyna])

HSP 1 Score: 111.7 bits (278), Expect = 9.300e-22
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPK+I DIRDFLQKARRKDA+SVK+KK++   KFKIRCS+YLYTL V+D EKA+KLTQSLPPGLQRKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: XP_008872992.1 (60S ribosomal protein L38 [Aphanomyces invadans] >XP_009842457.1 60S ribosomal protein L38 [Aphanomyces astaci] >ETV68158.1 60S ribosomal protein L38 [Aphanomyces astaci] >ETV98117.1 60S ribosomal protein L38 [Aphanomyces invadans] >GAX94801.1 60S ribosomal protein L38 [Pythium insidiosum])

HSP 1 Score: 111.3 bits (277), Expect = 1.200e-21
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPK+I DIRDFLQKARRKDA+SVK+KK+    KFKIRCS+YLYTL V+D EKA+KLTQSLPPGLQRKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKTDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: XP_012204089.1 (60S ribosomal protein L38 [Saprolegnia parasitica CBS 223.65] >KDO25256.1 60S ribosomal protein L38 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 110.9 bits (276), Expect = 1.600e-21
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPK+I DIRDFLQKARRKDA+SVK+KK+    KFKIRCS+YLYTL V+D EKA+KLTQSLPPGLQRKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: XP_002287616.1 (RL38, ribosomal protein 38 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED95059.1 RL38, ribosomal protein 38 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 110.5 bits (275), Expect = 2.100e-21
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPK+I DIRDFLQKARRKDAK VK++K S  TKFKIRCSR LYTL V D EKAEKLTQSLPPGLQRKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDAKLVKIRKRSDQTKFKIRCSRLLYTLVVKDAEKAEKLTQSLPPGLQRKDI 69
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: OQS03477.1 (60S ribosomal protein L38 [Thraustotheca clavata])

HSP 1 Score: 110.5 bits (275), Expect = 2.100e-21
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            +PK+I DIRDFLQKARRKDA+SVK+KK++   KFKIRCS+YLYTL V+D EKA+KLTQSLPPGLQRKDI
Sbjct:    5 LPKQITDIRDFLQKARRKDARSVKIKKTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 73
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: XP_008606528.1 (60S ribosomal protein L38 [Saprolegnia diclina VS20] >EQC40054.1 60S ribosomal protein L38 [Saprolegnia diclina VS20])

HSP 1 Score: 108.6 bits (270), Expect = 7.900e-21
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPK+I DIRDFLQKARRKDA+SVK+KK+    KFKIRCS+YLYTL V+D EKA+KLTQSLPPGL RKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLPRKDI 69
[Close]
BLAST of NO03G05230 vs. NCBI_GenBank
Match: OEU09448.1 (ribosomal protein L38 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 107.8 bits (268), Expect = 1.300e-20
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 0 
Query:    1 MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDIEKAEKLTQSLPPGLQRKDI 70
            MPK+I DIRDFLQKARR DAK VK+KK  + TKFKIRCSR+LYTL V+D EKA+KLTQSLPPGLQRK I
Sbjct:    1 MPKQITDIRDFLQKARRSDAKLVKIKKRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69
The following BLAST results are available for this feature:
BLAST of NO03G05230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009033600.11.100e-2284.06ribosomal protein L38 [Aureococcus anophagefferens... [more]
CCI47831.15.500e-2281.16unnamed protein product [Albugo candida][more]
XP_008908203.15.500e-2281.1660S ribosomal protein L38 [Phytophthora parasitica... [more]
OQR86808.19.300e-2279.7160S ribosomal protein L38 [Achlya hypogyna][more]
XP_008872992.11.200e-2179.7160S ribosomal protein L38 [Aphanomyces invadans] >... [more]
XP_012204089.11.600e-2179.7160S ribosomal protein L38 [Saprolegnia parasitica ... [more]
XP_002287616.12.100e-2182.61RL38, ribosomal protein 38 60S large ribosomal sub... [more]
OQS03477.12.100e-2178.2660S ribosomal protein L38 [Thraustotheca clavata][more]
XP_008606528.17.900e-2178.2660S ribosomal protein L38 [Saprolegnia diclina VS2... [more]
OEU09448.11.300e-2078.26ribosomal protein L38 [Fragilariopsis cylindrus CC... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005349NSK005349Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05230.1NO03G05230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573274gene_1737Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05230.1NO03G05230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05230 ID=NO03G05230|Name=NO03G05230|organism=Nannochloropsis oceanica|type=gene|length=985bp
ATGgtacgtgctgtggtggcgccttacgagggggggggcggaccggggta
gggggcgaccgcagcatggagtcatgactgagatgtttgttgggaggggg
gtgggcagtaggaggcgtgcaagcacagcgtgggcacgcggacgagtgga
gtgcctcacgcatgcatacttcgagtgtcatggatatggtatttgagtgt
cgcatgtggagacacggtcgatcggtcatctcactccgtttccctttcct
cccctcctttgctccctccctcccctcagCCCAAGGAGATCAAGGACATC
CGCGACTTCCTCCAGAAGGCCCGAAGgtacgtacagcctgttaaaagcac
tctaacaaggaattttgcggaagagagccgaagaaatggctggcatttgt
tcatatgttttctgtctcggtctagagtgttatgccagatttaatttgtt
tcatgcggctactggggaccatagggcaaggaagtacatttccatagagt
taaacatctgcgcgcattgtgcccatcatcctctcaattttgattcttcc
aaccttttggttctcctctgacgccacagAAAGGATGCCAAGTCAGTCAA
GGTCAAGAAGTCCAGCACCGGCACCAAGTTCAAGATTCGTTGCAGCCGGg
tacgtactttgatgtgcatgctttttaaatatgttccttatctgcatgtg
tgcattattcattggtggtgtatgaaagtgttgattgttgcttccgcttt
cctcgacttgccggaaggggtagtcgcgtgcaagaaatggaaagggtgat
cccgggcagacatgaaaggggtaatcaaattcaaagccacgtacactcac
ctcatcttttgctcctctcctctcttctcatttccatttatgcagTACTT
GTACACGCTGTCGGTCTCTGACATTGAGAAGGCCGAAAAGCTGACCCAGT
CCCTGCCCCCTGGGCTCCAGCGCAAGGACATCTAA
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protein sequence of NO03G05230.1

>NO03G05230.1-protein ID=NO03G05230.1-protein|Name=NO03G05230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=70bp
MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDI
EKAEKLTQSLPPGLQRKDI*
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Synonyms
Publications