NO03G05090, NO03G05090 (gene) Nannochloropsis oceanica

Overview
NameNO03G05090
Unique NameNO03G05090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2736
Alignment locationchr3:1440375..1443110 +

Link to JBrowse

Properties
Property NameValue
DescriptionRing-finger-containing e3 ubiquitin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1440375..1443110 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR031127E3_UB_ligase_RBR
IPR002867Znf_C6HC
IPR001841Znf_RING
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO03G05090 vs. NCBI_GenBank
Match: XP_008891750.1 (hypothetical protein PPTG_02428 [Phytophthora parasitica INRA-310] >ETL96543.1 hypothetical protein L917_06000 [Phytophthora parasitica] >ETM49697.1 hypothetical protein L914_06120 [Phytophthora parasitica] >ETN22503.1 hypothetical protein PPTG_02428 [Phytophthora parasitica INRA-310] >ETO78763.1 hypothetical protein F444_06373 [Phytophthora parasitica P1976])

HSP 1 Score: 250.4 bits (638), Expect = 1.800e-62
Identity = 124/282 (43.97%), Postives = 156/282 (55.32%), Query Frame = 0
Query:  302 EELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFF--SEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYERFKFQKKNRNGRICPWCE-TPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLLCFPCFLFKC 581
            EE   C IC +Y  V+ ++ LS CGH FC  C  +YLE KI EGQV P CFF  SED                    C   +   DI++LV  E W KY +FKF K++   R CP+C+ + +    + PE  C  C R FC+ HSNAH GR+C EY+++M   E  N A+IS  +KPCPGC N VEK GGCNQM CV C   +CW+C K +D   FP HFQWWNVRGC   QM  D+     +      V+  L  V  GP AFV+  VF ++C  CF   C
Sbjct:  244 EETFLCQICYDYASVNTSYGLSVCGHTFCEACLRNYLEFKIKEGQVYPKCFFEKSED-----------------KVACKAEISVDDIQSLVSDEIWQKYNKFKFNKEHELARQCPYCDHSQICAGSDHPECVCEACNREFCFVHSNAHQGRTCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVVCNTSFCWICLKVIDDTVFPEHFQWWNVRGCAGNQM-ADIEGQGATQKGIGLVMRILFFVIFGPPAFVMAVVFSIMC--CFFLPC 505          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: ETP47744.1 (hypothetical protein F442_06353 [Phytophthora parasitica P10297])

HSP 1 Score: 250.4 bits (638), Expect = 1.800e-62
Identity = 124/282 (43.97%), Postives = 156/282 (55.32%), Query Frame = 0
Query:  302 EELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFF--SEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYERFKFQKKNRNGRICPWCE-TPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLLCFPCFLFKC 581
            EE   C IC +Y  V+ ++ LS CGH FC  C  +YLE KI EGQV P CFF  SED                    C   +   DI++LV  E W KY +FKF K++   R CP+C+ + +    + PE  C  C R FC+ HSNAH GR+C EY+++M   E  N A+IS  +KPCPGC N VEK GGCNQM CV C   +CW+C K +D   FP HFQWWNVRGC   QM  D+     +      V+  L  V  GP AFV+  VF ++C  CF   C
Sbjct:  244 EETFLCQICYDYASVNTSYGLSVCGHTFCEACLRNYLEFKIKEGQVYPKCFFEKSED-----------------KVACKAEISVDDIQSLVSDEIWQKYNKFKFNKEHELARQCPYCDHSQICAGSDHPECVCEACNREFCFVHSNAHQGRTCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVVCNTSFCWICLKVIDDTVFPEHFQWWNVRGCAGNQM-ADIEGQGATQKGIGLVMRILFFVIFGPPAFVMAVVFSIMC--CFFLPC 505          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: KUF80820.1 (hypothetical protein AM587_10016070 [Phytophthora nicotianae])

HSP 1 Score: 250.4 bits (638), Expect = 1.800e-62
Identity = 124/282 (43.97%), Postives = 156/282 (55.32%), Query Frame = 0
Query:  302 EELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFF--SEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYERFKFQKKNRNGRICPWCE-TPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLLCFPCFLFKC 581
            EE   C IC +Y  V+ ++ LS CGH FC  C  +YLE KI EGQV P CFF  SED                    C   +   DI++LV  E W KY +FKF K++   R CP+C+ + +    + PE  C  C R FC+ HSNAH GR+C EY+++M   E  N A+IS  +KPCPGC N VEK GGCNQM CV C   +CW+C K +D   FP HFQWWNVRGC   QM  D+     +      V+  L  V  GP AFV+  VF ++C  CF   C
Sbjct:  211 EETFLCQICYDYASVNTSYGLSVCGHTFCEACLRNYLEFKIKEGQVYPKCFFEKSED-----------------KVACKAEISVDDIQSLVSDEIWQKYNKFKFNKEHELARQCPYCDHSQICAGSDHPECVCEACNREFCFVHSNAHQGRTCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVVCNTSFCWICLKVIDDTVFPEHFQWWNVRGCAGNQM-ADIEGQGATQKGIGLVMRILFFVIFGPPAFVMAVVFSIMC--CFFLPC 472          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: XP_009826534.1 (hypothetical protein H257_03923 [Aphanomyces astaci] >ETV84842.1 hypothetical protein H257_03923 [Aphanomyces astaci])

HSP 1 Score: 250.0 bits (637), Expect = 2.300e-62
Identity = 121/280 (43.21%), Postives = 154/280 (55.00%), Query Frame = 0
Query:  303 ELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFFSEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAE-TWAKYERFKFQKKNRNGRICPWCETPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVA-PPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLL---CFPCFL 578
            E  +C IC EY  V+ T  L  CGHRFC  C   Y+  KI +G V PTCFF+  P  GG           +P  C   ++  D++AL+ +E  WAKYE+FKF K++ N R CP C    +     P + C  C + +C+ HSNAH G SC +YE+    E+  N A IS  AK CPGC +PVEK+GGCNQM C+ CG ++CWLCG+ V  G FP HFQWWN+ GC   QM E     PS +H   M +      V  GP A VL      L   C PC +
Sbjct:  164 ETCYCQICLEYVDVATTIALDACGHRFCIECLEGYVTSKITDGMVYPTCFFAFPPEDGG----------AVPSTCHAAIQATDLRALITSEDVWAKYEKFKFNKEHANARECPHCHHVQVSAAANPTISCDACRQVYCFSHSNAHPGMSCADYEKARRAEDKLNHAKISQIAKFCPGCKSPVEKSGGCNQMKCITCGINFCWLCGQEVGDGVFPEHFQWWNLAGCAGAQMSEAATRKPSFAHKAMMFLFRLALCVIFGPPALVLTLACSALACCCVPCLI 433          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: XP_002901747.1 (RING-finger-containing E3 ubiquitin ligase, putative [Phytophthora infestans T30-4] >EEY57137.1 RING-finger-containing E3 ubiquitin ligase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 236.1 bits (601), Expect = 3.500e-58
Identity = 126/312 (40.38%), Postives = 168/312 (53.85%), Query Frame = 0
Query:  274 NLSALGEITRHVSQSFQLTVD----IVKTHLG---EELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFFSEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYERFKFQKKNRNGRICPWCE-TPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLLCFPCFL 578
            ++S+L    R  S S   +V      + ++LG   EE   C IC +Y  +  ++ LS CGH FC  C  +YLE KI EGQV P CFF         E+   +T       C   +   DI++LV    W K+ +FKF K++   R CP+C+ + +    + PE  C  C R FC+ HS+AH G SC EY+++M   E  N A+IS  +KPCPGC N VEK GGCNQM CV C   +CW+C K +D   FP HFQWWNVRGC   QM  D+     +      V+  +  V  GP A V+  VF +LC  CFL
Sbjct:  148 DISSLTAYRRQESNSLSHSVPSLFRSMASYLGLSMEETFLCQICYDYAPMKTSYALSVCGHLFCEACLRNYLEFKIKEGQVYPKCFF---------EISEDKT------ACNAEIAVDDIQSLVSDGVWQKHNKFKFNKEHELARQCPYCDHSQLCAGSDHPECVCEACNREFCFVHSSAHQGHSCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVVCTTSFCWICLKVIDDTVFPEHFQWWNVRGCAGNQM-ADIEGQGSTQKGVGIVMRIIFFVIFGPPALVMAVVFSVLCC-CFL 442          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: OWZ20152.1 (RING-finger-containing E3 ubiquitin ligase [Phytophthora megakarya])

HSP 1 Score: 233.0 bits (593), Expect = 3.000e-57
Identity = 116/264 (43.94%), Postives = 144/264 (54.55%), Query Frame = 0
Query:  302 EELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFF--SEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYERFKFQKKNRNGRICPWCE-TPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVSFLQLVFVGPAAF 563
            EE   C IC +Y  V+ ++ LS CGH FC  C  +YLE KI EGQV P CFF  SED                    C   +   DI+ LV  E W KY +FKF K++   R CP+C+ + +    + PE  C  C R FC+ HS+AH GR+C EY+++M   E  N A+IS  +K CPGC N VEK GGCNQM CV C   +CW+C K +D   FP HFQWWNVRGC   QM E     S      + V+  L  V  GP AF
Sbjct:  192 EETFLCQICYDYAPVNTSYALSICGHTFCETCVKNYLEFKIKEGQVYPKCFFEKSEDKTA-----------------CKADIAVDDIRLLVSEEVWQKYNKFKFNKEHELARQCPYCDHSQICAGSDNPECVCEACNREFCFVHSSAHQGRTCAEYDKKMIAVEKLNNALISKISKQCPGCQNNVEKTGGCNQMKCVVCNTSFCWICLKVIDDSVFPEHFQWWNVRGCAGNQMAEIEGQGSTQKGIGI-VLRVLFFVIFGPPAF 437          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: XP_008870592.1 (hypothetical protein H310_07079 [Aphanomyces invadans] >XP_008870593.1 hypothetical protein, variant [Aphanomyces invadans] >ETW00457.1 hypothetical protein H310_07079 [Aphanomyces invadans] >ETW00458.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 229.6 bits (584), Expect = 3.300e-56
Identity = 119/291 (40.89%), Postives = 152/291 (52.23%), Query Frame = 0
Query:  303 ELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFFSEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRA-ETWAKYERFKFQKKNRNGRICPWCETPVLGDPE--KPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVA--PPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLL---CFPCFLFKCIGQRE 586
            E  +C IC EY  V+ T  L+ CGHRFC  C   Y+  KI +G V PTCFF+  P   G +         IP  C   +   D++A++ + E W+KYE+FKF K++ N R CP+C    +       P + C                     EYE+    EE  NQA IS  AK CPGC +PVEK+GGCNQM C+ CG H+CWLCGK VD G FP HFQWWN+ GC   QM E  A  P   + I W      L +VF GP AF++   F ++   C PC    C+  RE
Sbjct:  161 ETCYCQICLEYVDVASTIMLNACGHRFCIECMEGYVASKITDGLVYPTCFFTSPPSDDGSDSA-------IPTTCHAAIHPTDLRAVISSDEVWSKYEKFKFNKEHANARECPFCHHVQVSATAAVDPAITCXXXXXXXXXXXXXXXXXXXXVEYEKSRRAEEKLNQAKISQIAKLCPGCKSPVEKSGGCNQMKCITCGIHFCWLCGKQVDDGVFPEHFQWWNLAGCAGAQMSESTAGQPSMLNKISWFLFRLVLCIVF-GPPAFLMAIAFSIIGCCCIPC----CMTSRE 439          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: XP_009826535.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV84843.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 228.0 bits (580), Expect = 9.500e-56
Identity = 115/283 (40.64%), Postives = 151/283 (53.36%), Query Frame = 0
Query:  303 ELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFFSEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAE-TWAKYERFKFQKKNRNGRICPWCETPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLLCFPCFLFKCIGQR 585
            E  +C IC EY  V+ T  L  CGHRFC  C   Y+  KI +G V PTCFF+  P  GG           +P  C   ++  D++AL+ +E  WAKYE+FKF K++ N R CP C    +     P + C  C + +C+ HSNAH G SC +YE+    E+  N A IS  AK CPGC +PVEK+GGCNQM C+ CG ++CWLCG+ V  G FP HFQ   VR  P         P   S+  W +V+    L    P   +L  + Y   F  +L  C G+R
Sbjct:  164 ETCYCQICLEYVDVATTIALDACGHRFCIECLEGYVTSKITDGMVYPTCFFAFPPEDGG----------AVPSTCHAAIQATDLRALITSEDVWAKYEKFKFNKEHANARECPHCHHVQVSAAANPTISCDACRQVYCFSHSNAHPGMSCADYEKARRAEDKLNHAKISQIAKFCPGCKSPVEKSGGCNQMKCITCGINFCWLCGQEVGDGVFPEHFQ---VRPVP---------PSHRSYFAWSRVMISTYLCTSRPTCVLLDLLVY---FSTYLCTCCGRR 421          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: XP_024571718.1 (Predicted E3 ubiquitin ligase [Plasmopara halstedii] >XP_024582224.1 Predicted E3 ubiquitin ligase [Plasmopara halstedii] >CEG45855.1 Predicted E3 ubiquitin ligase [Plasmopara halstedii] >CEG35349.1 Predicted E3 ubiquitin ligase [Plasmopara halstedii])

HSP 1 Score: 221.9 bits (564), Expect = 6.800e-54
Identity = 111/269 (41.26%), Postives = 144/269 (53.53%), Query Frame = 0
Query:  275 LSALGEITRHVSQSFQL----TVDIVKTHLG----EELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFFSEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYERFKFQKKNRNGRICPWCE-TPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQED 535
            +S L   TRH   +F+     ++  +  +LG     EL  C IC +Y  VSK++ L  CGH FC+ C  S+LE KI EGQV P CFF         E+            C   +   DI+ALV    W KY  FKF K +   R CP+C+ + V    E PE  C  C R FC+ H+NAH   +C  YE+ M   E  N ++IS  ++ CPGC N VEK GGCNQM CV C   +CW+C K +D   FP HFQWWN+RGC   QM ++
Sbjct:  202 ISNLAIFTRHERTNFRHSMPDSLQSMVNYLGLSNLNELFLCQICYDYVPVSKSYALVVCGHIFCQACLKSFLEFKIKEGQVYPKCFF---------EISKNEA------ACNAAISVDDIQALVSQRVWQKYTTFKFNKDHELARQCPYCDHSQVCAGSENPECICEACNREFCFLHNNAHQDETCAAYERSMIAIEKLNNSLISKISRRCPGCQNYVEKIGGCNQMKCVVCSTSFCWICLKIIDDSVFPEHFQWWNIRGCAGNQMLDN 455          
BLAST of NO03G05090 vs. NCBI_GenBank
Match: CBJ25995.1 (Predicted E3 ubiquitin ligase [Ectocarpus siliculosus])

HSP 1 Score: 217.2 bits (552), Expect = 1.700e-52
Identity = 130/380 (34.21%), Postives = 172/380 (45.26%), Query Frame = 0
Query:  309 ICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFFS--------EDPRGGGREVGGRRTPVI---------------------------------IPPPCAKRVEEGDIKALVR--AETWAKYERFKFQKKNRNGRICPWCETPVLGDPE-KPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLLCFPCFLFKCIGQREREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQYTGCVSFWGNTLLGLLLIPFFL 645
            IC +       F LS CGH FCR C  +Y+  KI + +  P    S        E+ + G     G R P +                                     C   +   DIK L++  A T  KY RF F ++++  R CP C    +GDP    EM CG+CG  FCY H  AH G++C EY +   +E  +  A+I    KPCPGC  PVEK GGCNQM C+ C   +CW+C + VD+GTFP HFQWWNVRGCPN Q+QED +  SP   +  K++S +Q+V VGP A +L     L C  C     +  R                                    Q +TGC+S WGN ++ L L+P  L
Sbjct:    5 ICLDDRPAEAGFVLSACGHVFCRECLKAYVTSKINDAEFIPRALTSTKGFAPWKEERKSGVPWGWGGRGPAVGVDARGGXXXXXXXXXXXXXXXXXXXXXXXXXXXREGCGAVIRPSDIKVLIKTDATTQRKYARFLFSREHKTARECPRCANLSVGDPSVSLEMRCGECGYVFCYEHGGAHQGKTCAEYVEATADETNRTMALIGRITKPCPGCQTPVEKLGGCNQMVCMHCNCSFCWICMEPVDRGTFPVHFQWWNVRGCPNQQLQED-SHQSPRGRQCHKLLSAVQIVVVGPLALLLTAASSLACVCCLPAFRLPPR------------------------------------QLFTGCISGWGNFVMVLPLLPVVL 347          
The following BLAST results are available for this feature:
BLAST of NO03G05090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008891750.11.800e-6243.97hypothetical protein PPTG_02428 [Phytophthora para... [more]
ETP47744.11.800e-6243.97hypothetical protein F442_06353 [Phytophthora para... [more]
KUF80820.11.800e-6243.97hypothetical protein AM587_10016070 [Phytophthora ... [more]
XP_009826534.12.300e-6243.21hypothetical protein H257_03923 [Aphanomyces astac... [more]
XP_002901747.13.500e-5840.38RING-finger-containing E3 ubiquitin ligase, putati... [more]
OWZ20152.13.000e-5743.94RING-finger-containing E3 ubiquitin ligase [Phytop... [more]
XP_008870592.13.300e-5640.89hypothetical protein H310_07079 [Aphanomyces invad... [more]
XP_009826535.19.500e-5640.64hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_024571718.16.800e-5441.26Predicted E3 ubiquitin ligase [Plasmopara halstedi... [more]
CBJ25995.11.700e-5234.21Predicted E3 ubiquitin ligase [Ectocarpus siliculo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005370NSK005370Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05090.1NO03G05090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667597gene_1717Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100247g8gene696Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05090.1NO03G05090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05090 ID=NO03G05090|Name=NO03G05090|organism=Nannochloropsis oceanica|type=gene|length=2736bp
ATGTTTGGGCGCCGCGCAGGCAACAGTAGTTTCAAGCCAAAGCCCCAGCC
TCTCCCAGCCCCCCCCATCACGGACGCCGACGAGGGCAACAAGACGGAGT
CTCACACCATCGACATCATTGCCAAGCCCCCCGAGATTGCGGACGCTGCT
CCTTCTTTCGCCCCCCCTTCTTCGAATACATCTGCTCAATTCAAACCACC
TTCCGCTTGCTCGTTTTCCTCTCCCTCGCTCGTAGCGCCCCATTCAATTG
CTGCTGCGGACACCCTGGCACGCCTCGAGGAGGGTCACGTACCTCCTTCC
TCCTCGTCGTTACCGTCCTATTCCTCGGTGGTTTCGGACCTTCCCACGCA
AGTATCGCATCTCTCGCCTTCACCTATCGAACAGGAGTCCTTGCGGGAAA
TGGGAAAGAGGGAGGCGGGAGAGGAAAAGGGGGAAGAGGAGGAGGCATCA
TCTGTGGTTCCTGATGTCTTGCCCATTCCCTTCCGGCAGTCTATGTCTGG
TGGTGCTGGTTCATCCGTAGGGAGCCCTGTCAATGCGAGCAGGAGCACGA
CTCCCACGCAATACCACCAACACCACCACCTCCACCGCCATGAACGACAT
TGTCGTCGCTCTTCGAGGGGCGATCCTTCCAACCGCGCTTCCGAGCGCGT
GAGTTGCCACACCAATCACCACTACCACCACCACCACCACCATGAGAACG
ACGAAAACGCAAGTTGCCATGGCTCTCACCCCCCCGGCGGCCCTGTTTCT
GACGACGGATGCACGCATGCATGTAGCCACACCGGCACCAATAGTGTCGA
TGGCAACAACAGCTACGGGAATTTAAGTGCCCTGGGAGAGATCACGCGGC
ATGTGTCCCAGTCGTTTCAACTAACGGTCGACATAGTCAAGACCCACTTG
GGGGAGGAGTTGGTGTTTTGTTCCATCTGTCGGGAGTATGAGGGGGTGAG
CAAGACGTTCCGGCTCTCGGGGTGTGGGCACCGGTTCTGTCGGTGTTGTT
TCGCCTCTTACCTGGAATGCAAGATTTGCGAAGGTCAAGTCAAGCCCACC
TGTTTCTTTAGCGAGGACCCGAGGGGGGGGGGGCGGGAGGTAGGGGGTAG
GCGGACACCGGTCATTATTCCTCCTCCCTGCGCGAAACGAGTTGAGGAAG
GGGATATCAAGGCGTTGGTCCGGGCGGAGACCTGGGCCAAGTATGAGCGG
TTTAAGTTTCAAAAAAAAAACCGAAATGGACGTATCTGCCCATGGTGTGA
GACGCCTGTCCTGGGAGACCCTGAAAAACCGGAGATGGAGTGTGGGAAGT
GCGGCCGCGGGTTTTGTTATTTTCACAGTAATGCCCATGTAGGGAGGAGT
TGCACGGAGTACGAGCAGCGGATGCATGAGGAGGAGCTGAAGAATCAGGC
AATGATTAGCAGTTTCGCCAAGgtaggtatatttgtatatatgtacgtat
gtatgtatatctatggagggcggtggtttgccgtgaggaagatggggatt
tgccgccgacaatctcacaggccaaccccccctccctcctcccctccctc
tccttccttttctcccctcccccagCCCTGCCCTGGATGCGGGAATCCCG
TCGAGAAAGCGGGTGGGTGCAACCAAATGTTCTGCGTGTGGTGCGGCGAG
CACTGGTGCTGGCTTTGCGGCAAGTTCGTGGACAAAGGAACCTTCCCCAA
TCATTTCCAGgtgagggggggggagggagggagggggggagggggggagt
ggaggacggggaggaaactccatcacatctaaaagttgcgtacgctattc
gtgacacggagacatgaacttaccctccctccatcttccctttctccctt
tctccctccctccctccctccctccctccctccccagTGGTGGAACGTCC
GCGGCTGCCCCAACATGCAGATGCAGGAAGACGTGGCACCTCCTTCTCCC
TCCCACATTCGCTGGATGAAGGTCGTCTCTTTCCTGCAGCTGGTGTTTGT
CGGCCCGGCAGgtgcgtgtgccaatagtaaagttcctgaaaatgaataag
tgtctcttttaagttgggagggggggttgtgtcctgccatccacatgctc
ccccctactccatttcctcaacgtttccctccctccctcctcccttttgc
ccctttaccactgtcaacagCCTTCGTCCTCGGTACTGTGTTTTATCTCC
TCTGCTTTCCTTGCTTTTTGTTCAAATGCATCGGACAAAGGGAAAGAGAA
GAGGAAGAGGGGGGAGAAGGGGAAGGGGAAAGGGAAGGAGGGAGGGATTC
AAGGGATGGGAGGGAAGACGGGGGGGAGGAAGGGGAGAGGGAACTACGGC
AGCAATACACCGGATGTGTCAGTTTTTGGGGAAACACGCTCCTAGGGCTC
TTGTTGATACCCTTTTTCTTGACTATCCTGCTCCTTTGTTTTGTGGTCAC
GTTCATCCAAGTTCTGGTGACGAGTATCAATACGAGGTTTGGAGTGTGTT
GTGGCGCGAAGGGTGGAAGAAGAGGGGGAGGTAGGGGGGAAGGAGGGGAG
GGACGGGTGGCGGCGACTGTTGTGGCGGGGTTGGGAAGTACGGCAGTGGC
TATGACGAGGAGTTTGAGTCGAGGGGGAGCAGGAGAAAGAGGGGAAGCAG
GGTTAGGAGCCGGAGCAGAAGGGGGAGCAGGGGCAGCAGCCGGAGCTGGA
GGAGGAGGAGGACGACGACGAGTAGGAGGCAGTTGA
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protein sequence of NO03G05090.1

>NO03G05090.1-protein ID=NO03G05090.1-protein|Name=NO03G05090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MFGRRAGNSSFKPKPQPLPAPPITDADEGNKTESHTIDIIAKPPEIADAA
PSFAPPSSNTSAQFKPPSACSFSSPSLVAPHSIAAADTLARLEEGHVPPS
SSSLPSYSSVVSDLPTQVSHLSPSPIEQESLREMGKREAGEEKGEEEEAS
SVVPDVLPIPFRQSMSGGAGSSVGSPVNASRSTTPTQYHQHHHLHRHERH
CRRSSRGDPSNRASERVSCHTNHHYHHHHHHENDENASCHGSHPPGGPVS
DDGCTHACSHTGTNSVDGNNSYGNLSALGEITRHVSQSFQLTVDIVKTHL
GEELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPT
CFFSEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYER
FKFQKKNRNGRICPWCETPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRS
CTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEH
WCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVS
FLQLVFVGPAAFVLGTVFYLLCFPCFLFKCIGQREREEEEGGEGEGEREG
GRDSRDGREDGGEEGERELRQQYTGCVSFWGNTLLGLLLIPFFLTILLLC
FVVTFIQVLVTSINTRFGVCCGAKGGRRGGGRGEGGEGRVAATVVAGLGS
TAVAMTRSLSRGGAGERGEAGLGAGAEGGAGAAAGAGGGGGRRRVGGS*
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Synonyms
Publications