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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1440375..1443110 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05090.1 vs.
Match: EWM29954.1 (ring-finger-containing e3 ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 552.7 bits (1423), Expect = 1.700e-153 Identity = 310/582 (53.26%), Postives = 374/582 (64.26%), Query Frame = 0
Query: 188 YHQHHHLHRHERHCRRSSRGDPSNRASERVSCHTNHHYHHHHHHENDENASCHGSHPPGGPVSDDGCTHACSHTGTNSVDGNNSYGNLSALGEITRHVSQSFQLTVDIVKTHLGEELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPTCFFSEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYERFKFQKKNRNGRICPWCETPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRSCTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEHWCWLCGKFVDKGTFPNHFQWWNV-RGCPNMQMQEDVAPPSPSHIRWMKVVSFLQLVFVGPAAFVLGTVFYLLCFPCFLFKCIGQREREEEEGGEGEGEREGGRDSRDGREDGGEEGERELRQQYTGCVSFWGNTLLGLLLIPFFLTILLLCFVVTFIQVLVTSINTRFGVCCGAKGGRRGGG-RGEGGEGRVAAT---------------------VVAGLGSTAVAMTRSLSRGGAGERGEAGLGAGAEGGAGAAAGAGGGGGRRRVG 747
Y+QH + RH RR+S GD + H + H H E+ + S S G S DG + TG+ LS LG+I RHVSQSFQ+++DIVKTHLGEELVFC +CREYE VSKT+RL CGHR+CR CF SYLECKI EGQ+ PTCF+SE+ GRE RT IP PCA V E D+ LV ETW KYERFKFQK +RN R+CP+C++ LGD E+P M C KCG+ FCYFH++AH +SCTEYEQ HEE L+NQAMIS+ AKPCPGCGNPVEK+GGCNQM CVWCG++WCWLCGK VD GTFP+HFQWWNV GCPNMQMQED+ PP PSHIR +K +S LQL+F+GPAAFV+GT Y+ CFPCFLFKC+G G+G+ ERE EEG R+LR YTGC+SFWGNTL+ LLIPFF+ +LLL F++TF QVL +S+++RFG+CCG + G GGG RGE G+GR T A + AMT S S GG G G G GA + A AG + +VG
Sbjct: 111 YYQHPNRQRHHDRPRRNSWGDVRGQPPHL------HSHKHKHPREDSQTTSSGASGGGEGGGSGDGMGPSIGSTGS-----------LSTLGKIGRHVSQSFQMSLDIVKTHLGEELVFCQVCREYERVSKTYRLGACGHRYCRGCFTSYLECKISEGQIHPTCFYSEENGRTGREGRRYRT---IPRPCATPVLESDMYTLVCPETWLKYERFKFQKAHRNARMCPFCDSAELGDAEQPAMTCSKCGKQFCYFHASAHPNKSCTEYEQLTHEETLRNQAMISTIAKPCPGCGNPVEKSGGCNQMACVWCGQNWCWLCGKLVDNGTFPDHFQWWNVIGGCPNMQMQEDLEPPPPSHIRLVKFLSILQLIFIGPAAFVIGTGLYIACFPCFLFKCVGVI-------GQGDDERE------------NEEGGRQLRAHYTGCISFWGNTLVAFLLIPFFVAMLLLFFLLTFFQVLCSSVHSRFGICCGMEKGWEGGGERGERGQGRREGTRPHGEEAEGGALATPPPSTVEAAAAAINVFAAMTHSFSVGGGGAGGGGGAGAMNRAHSSAVAGRSLVKSKEKVG 653
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05090.1 ID=NO03G05090.1|Name=NO03G05090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
ATGTTTGGGCGCCGCGCAGGCAACAGTAGTTTCAAGCCAAAGCCCCAGCC
TCTCCCAGCCCCCCCCATCACGGACGCCGACGAGGGCAACAAGACGGAGT
CTCACACCATCGACATCATTGCCAAGCCCCCCGAGATTGCGGACGCTGCT
CCTTCTTTCGCCCCCCCTTCTTCGAATACATCTGCTCAATTCAAACCACC
TTCCGCTTGCTCGTTTTCCTCTCCCTCGCTCGTAGCGCCCCATTCAATTG
CTGCTGCGGACACCCTGGCACGCCTCGAGGAGGGTCACGTACCTCCTTCC
TCCTCGTCGTTACCGTCCTATTCCTCGGTGGTTTCGGACCTTCCCACGCA
AGTATCGCATCTCTCGCCTTCACCTATCGAACAGGAGTCCTTGCGGGAAA
TGGGAAAGAGGGAGGCGGGAGAGGAAAAGGGGGAAGAGGAGGAGGCATCA
TCTGTGGTTCCTGATGTCTTGCCCATTCCCTTCCGGCAGTCTATGTCTGG
TGGTGCTGGTTCATCCGTAGGGAGCCCTGTCAATGCGAGCAGGAGCACGA
CTCCCACGCAATACCACCAACACCACCACCTCCACCGCCATGAACGACAT
TGTCGTCGCTCTTCGAGGGGCGATCCTTCCAACCGCGCTTCCGAGCGCGT
GAGTTGCCACACCAATCACCACTACCACCACCACCACCACCATGAGAACG
ACGAAAACGCAAGTTGCCATGGCTCTCACCCCCCCGGCGGCCCTGTTTCT
GACGACGGATGCACGCATGCATGTAGCCACACCGGCACCAATAGTGTCGA
TGGCAACAACAGCTACGGGAATTTAAGTGCCCTGGGAGAGATCACGCGGC
ATGTGTCCCAGTCGTTTCAACTAACGGTCGACATAGTCAAGACCCACTTG
GGGGAGGAGTTGGTGTTTTGTTCCATCTGTCGGGAGTATGAGGGGGTGAG
CAAGACGTTCCGGCTCTCGGGGTGTGGGCACCGGTTCTGTCGGTGTTGTT
TCGCCTCTTACCTGGAATGCAAGATTTGCGAAGGTCAAGTCAAGCCCACC
TGTTTCTTTAGCGAGGACCCGAGGGGGGGGGGGCGGGAGGTAGGGGGTAG
GCGGACACCGGTCATTATTCCTCCTCCCTGCGCGAAACGAGTTGAGGAAG
GGGATATCAAGGCGTTGGTCCGGGCGGAGACCTGGGCCAAGTATGAGCGG
TTTAAGTTTCAAAAAAAAAACCGAAATGGACGTATCTGCCCATGGTGTGA
GACGCCTGTCCTGGGAGACCCTGAAAAACCGGAGATGGAGTGTGGGAAGT
GCGGCCGCGGGTTTTGTTATTTTCACAGTAATGCCCATGTAGGGAGGAGT
TGCACGGAGTACGAGCAGCGGATGCATGAGGAGGAGCTGAAGAATCAGGC
AATGATTAGCAGTTTCGCCAAGCCCTGCCCTGGATGCGGGAATCCCGTCG
AGAAAGCGGGTGGGTGCAACCAAATGTTCTGCGTGTGGTGCGGCGAGCAC
TGGTGCTGGCTTTGCGGCAAGTTCGTGGACAAAGGAACCTTCCCCAATCA
TTTCCAGTGGTGGAACGTCCGCGGCTGCCCCAACATGCAGATGCAGGAAG
ACGTGGCACCTCCTTCTCCCTCCCACATTCGCTGGATGAAGGTCGTCTCT
TTCCTGCAGCTGGTGTTTGTCGGCCCGGCAGCCTTCGTCCTCGGTACTGT
GTTTTATCTCCTCTGCTTTCCTTGCTTTTTGTTCAAATGCATCGGACAAA
GGGAAAGAGAAGAGGAAGAGGGGGGAGAAGGGGAAGGGGAAAGGGAAGGA
GGGAGGGATTCAAGGGATGGGAGGGAAGACGGGGGGGAGGAAGGGGAGAG
GGAACTACGGCAGCAATACACCGGATGTGTCAGTTTTTGGGGAAACACGC
TCCTAGGGCTCTTGTTGATACCCTTTTTCTTGACTATCCTGCTCCTTTGT
TTTGTGGTCACGTTCATCCAAGTTCTGGTGACGAGTATCAATACGAGGTT
TGGAGTGTGTTGTGGCGCGAAGGGTGGAAGAAGAGGGGGAGGTAGGGGGG
AAGGAGGGGAGGGACGGGTGGCGGCGACTGTTGTGGCGGGGTTGGGAAGT
ACGGCAGTGGCTATGACGAGGAGTTTGAGTCGAGGGGGAGCAGGAGAAAG
AGGGGAAGCAGGGTTAGGAGCCGGAGCAGAAGGGGGAGCAGGGGCAGCAG
CCGGAGCTGGAGGAGGAGGAGGACGACGACGAGTAGGAGGCAGTTGA back to topprotein sequence of NO03G05090.1 >NO03G05090.1-protein ID=NO03G05090.1-protein|Name=NO03G05090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MFGRRAGNSSFKPKPQPLPAPPITDADEGNKTESHTIDIIAKPPEIADAA
PSFAPPSSNTSAQFKPPSACSFSSPSLVAPHSIAAADTLARLEEGHVPPS
SSSLPSYSSVVSDLPTQVSHLSPSPIEQESLREMGKREAGEEKGEEEEAS
SVVPDVLPIPFRQSMSGGAGSSVGSPVNASRSTTPTQYHQHHHLHRHERH
CRRSSRGDPSNRASERVSCHTNHHYHHHHHHENDENASCHGSHPPGGPVS
DDGCTHACSHTGTNSVDGNNSYGNLSALGEITRHVSQSFQLTVDIVKTHL
GEELVFCSICREYEGVSKTFRLSGCGHRFCRCCFASYLECKICEGQVKPT
CFFSEDPRGGGREVGGRRTPVIIPPPCAKRVEEGDIKALVRAETWAKYER
FKFQKKNRNGRICPWCETPVLGDPEKPEMECGKCGRGFCYFHSNAHVGRS
CTEYEQRMHEEELKNQAMISSFAKPCPGCGNPVEKAGGCNQMFCVWCGEH
WCWLCGKFVDKGTFPNHFQWWNVRGCPNMQMQEDVAPPSPSHIRWMKVVS
FLQLVFVGPAAFVLGTVFYLLCFPCFLFKCIGQREREEEEGGEGEGEREG
GRDSRDGREDGGEEGERELRQQYTGCVSFWGNTLLGLLLIPFFLTILLLC
FVVTFIQVLVTSINTRFGVCCGAKGGRRGGGRGEGGEGRVAATVVAGLGS
TAVAMTRSLSRGGAGERGEAGLGAGAEGGAGAAAGAGGGGGRRRVGGS* back to topmRNA from alignment at chr3:1440375..1443110+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05090.1 ID=NO03G05090.1|Name=NO03G05090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2736bp|location=Sequence derived from alignment at chr3:1440375..1443110+ (Nannochloropsis oceanica)
ATGTTTGGGCGCCGCGCAGGCAACAGTAGTTTCAAGCCAAAGCCCCAGCC
TCTCCCAGCCCCCCCCATCACGGACGCCGACGAGGGCAACAAGACGGAGT
CTCACACCATCGACATCATTGCCAAGCCCCCCGAGATTGCGGACGCTGCT
CCTTCTTTCGCCCCCCCTTCTTCGAATACATCTGCTCAATTCAAACCACC
TTCCGCTTGCTCGTTTTCCTCTCCCTCGCTCGTAGCGCCCCATTCAATTG
CTGCTGCGGACACCCTGGCACGCCTCGAGGAGGGTCACGTACCTCCTTCC
TCCTCGTCGTTACCGTCCTATTCCTCGGTGGTTTCGGACCTTCCCACGCA
AGTATCGCATCTCTCGCCTTCACCTATCGAACAGGAGTCCTTGCGGGAAA
TGGGAAAGAGGGAGGCGGGAGAGGAAAAGGGGGAAGAGGAGGAGGCATCA
TCTGTGGTTCCTGATGTCTTGCCCATTCCCTTCCGGCAGTCTATGTCTGG
TGGTGCTGGTTCATCCGTAGGGAGCCCTGTCAATGCGAGCAGGAGCACGA
CTCCCACGCAATACCACCAACACCACCACCTCCACCGCCATGAACGACAT
TGTCGTCGCTCTTCGAGGGGCGATCCTTCCAACCGCGCTTCCGAGCGCGT
GAGTTGCCACACCAATCACCACTACCACCACCACCACCACCATGAGAACG
ACGAAAACGCAAGTTGCCATGGCTCTCACCCCCCCGGCGGCCCTGTTTCT
GACGACGGATGCACGCATGCATGTAGCCACACCGGCACCAATAGTGTCGA
TGGCAACAACAGCTACGGGAATTTAAGTGCCCTGGGAGAGATCACGCGGC
ATGTGTCCCAGTCGTTTCAACTAACGGTCGACATAGTCAAGACCCACTTG
GGGGAGGAGTTGGTGTTTTGTTCCATCTGTCGGGAGTATGAGGGGGTGAG
CAAGACGTTCCGGCTCTCGGGGTGTGGGCACCGGTTCTGTCGGTGTTGTT
TCGCCTCTTACCTGGAATGCAAGATTTGCGAAGGTCAAGTCAAGCCCACC
TGTTTCTTTAGCGAGGACCCGAGGGGGGGGGGGCGGGAGGTAGGGGGTAG
GCGGACACCGGTCATTATTCCTCCTCCCTGCGCGAAACGAGTTGAGGAAG
GGGATATCAAGGCGTTGGTCCGGGCGGAGACCTGGGCCAAGTATGAGCGG
TTTAAGTTTCAAAAAAAAAACCGAAATGGACGTATCTGCCCATGGTGTGA
GACGCCTGTCCTGGGAGACCCTGAAAAACCGGAGATGGAGTGTGGGAAGT
GCGGCCGCGGGTTTTGTTATTTTCACAGTAATGCCCATGTAGGGAGGAGT
TGCACGGAGTACGAGCAGCGGATGCATGAGGAGGAGCTGAAGAATCAGGC
AATGATTAGCAGTTTCGCCAAGGTAGGTATATTTGTATATATGTACGTAT
GTATGTATATCTATGGAGGGCGGTGGTTTGCCGTGAGGAAGATGGGGATT
TGCCGCCGACAATCTCACAGGCCAACCCCCCCTCCCTCCTCCCCTCCCTC
TCCTTCCTTTTCTCCCCTCCCCCAGCCCTGCCCTGGATGCGGGAATCCCG
TCGAGAAAGCGGGTGGGTGCAACCAAATGTTCTGCGTGTGGTGCGGCGAG
CACTGGTGCTGGCTTTGCGGCAAGTTCGTGGACAAAGGAACCTTCCCCAA
TCATTTCCAGGTGAGGGGGGGGGAGGGAGGGAGGGGGGGAGGGGGGGAGT
GGAGGACGGGGAGGAAACTCCATCACATCTAAAAGTTGCGTACGCTATTC
GTGACACGGAGACATGAACTTACCCTCCCTCCATCTTCCCTTTCTCCCTT
TCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGTGGTGGAACGTCC
GCGGCTGCCCCAACATGCAGATGCAGGAAGACGTGGCACCTCCTTCTCCC
TCCCACATTCGCTGGATGAAGGTCGTCTCTTTCCTGCAGCTGGTGTTTGT
CGGCCCGGCAGGTGCGTGTGCCAATAGTAAAGTTCCTGAAAATGAATAAG
TGTCTCTTTTAAGTTGGGAGGGGGGGTTGTGTCCTGCCATCCACATGCTC
CCCCCTACTCCATTTCCTCAACGTTTCCCTCCCTCCCTCCTCCCTTTTGC
CCCTTTACCACTGTCAACAGCCTTCGTCCTCGGTACTGTGTTTTATCTCC
TCTGCTTTCCTTGCTTTTTGTTCAAATGCATCGGACAAAGGGAAAGAGAA
GAGGAAGAGGGGGGAGAAGGGGAAGGGGAAAGGGAAGGAGGGAGGGATTC
AAGGGATGGGAGGGAAGACGGGGGGGAGGAAGGGGAGAGGGAACTACGGC
AGCAATACACCGGATGTGTCAGTTTTTGGGGAAACACGCTCCTAGGGCTC
TTGTTGATACCCTTTTTCTTGACTATCCTGCTCCTTTGTTTTGTGGTCAC
GTTCATCCAAGTTCTGGTGACGAGTATCAATACGAGGTTTGGAGTGTGTT
GTGGCGCGAAGGGTGGAAGAAGAGGGGGAGGTAGGGGGGAAGGAGGGGAG
GGACGGGTGGCGGCGACTGTTGTGGCGGGGTTGGGAAGTACGGCAGTGGC
TATGACGAGGAGTTTGAGTCGAGGGGGAGCAGGAGAAAGAGGGGAAGCAG
GGTTAGGAGCCGGAGCAGAAGGGGGAGCAGGGGCAGCAGCCGGAGCTGGA
GGAGGAGGAGGACGACGACGAGTAGGAGGCAGTTGA back to topCoding sequence (CDS) from alignment at chr3:1440375..1443110+ >NO03G05090.1 ID=NO03G05090.1|Name=NO03G05090.1|organism=Nannochloropsis oceanica|type=CDS|length=2247bp|location=Sequence derived from alignment at chr3:1440375..1443110+ (Nannochloropsis oceanica)
ATGTTTGGGCGCCGCGCAGGCAACAGTAGTTTCAAGCCAAAGCCCCAGCC
TCTCCCAGCCCCCCCCATCACGGACGCCGACGAGGGCAACAAGACGGAGT
CTCACACCATCGACATCATTGCCAAGCCCCCCGAGATTGCGGACGCTGCT
CCTTCTTTCGCCCCCCCTTCTTCGAATACATCTGCTCAATTCAAACCACC
TTCCGCTTGCTCGTTTTCCTCTCCCTCGCTCGTAGCGCCCCATTCAATTG
CTGCTGCGGACACCCTGGCACGCCTCGAGGAGGGTCACGTACCTCCTTCC
TCCTCGTCGTTACCGTCCTATTCCTCGGTGGTTTCGGACCTTCCCACGCA
AGTATCGCATCTCTCGCCTTCACCTATCGAACAGGAGTCCTTGCGGGAAA
TGGGAAAGAGGGAGGCGGGAGAGGAAAAGGGGGAAGAGGAGGAGGCATCA
TCTGTGGTTCCTGATGTCTTGCCCATTCCCTTCCGGCAGTCTATGTCTGG
TGGTGCTGGTTCATCCGTAGGGAGCCCTGTCAATGCGAGCAGGAGCACGA
CTCCCACGCAATACCACCAACACCACCACCTCCACCGCCATGAACGACAT
TGTCGTCGCTCTTCGAGGGGCGATCCTTCCAACCGCGCTTCCGAGCGCGT
GAGTTGCCACACCAATCACCACTACCACCACCACCACCACCATGAGAACG
ACGAAAACGCAAGTTGCCATGGCTCTCACCCCCCCGGCGGCCCTGTTTCT
GACGACGGATGCACGCATGCATGTAGCCACACCGGCACCAATAGTGTCGA
TGGCAACAACAGCTACGGGAATTTAAGTGCCCTGGGAGAGATCACGCGGC
ATGTGTCCCAGTCGTTTCAACTAACGGTCGACATAGTCAAGACCCACTTG
GGGGAGGAGTTGGTGTTTTGTTCCATCTGTCGGGAGTATGAGGGGGTGAG
CAAGACGTTCCGGCTCTCGGGGTGTGGGCACCGGTTCTGTCGGTGTTGTT
TCGCCTCTTACCTGGAATGCAAGATTTGCGAAGGTCAAGTCAAGCCCACC
TGTTTCTTTAGCGAGGACCCGAGGGGGGGGGGGCGGGAGGTAGGGGGTAG
GCGGACACCGGTCATTATTCCTCCTCCCTGCGCGAAACGAGTTGAGGAAG
GGGATATCAAGGCGTTGGTCCGGGCGGAGACCTGGGCCAAGTATGAGCGG
TTTAAGTTTCAAAAAAAAAACCGAAATGGACGTATCTGCCCATGGTGTGA
GACGCCTGTCCTGGGAGACCCTGAAAAACCGGAGATGGAGTGTGGGAAGT
GCGGCCGCGGGTTTTGTTATTTTCACAGTAATGCCCATGTAGGGAGGAGT
TGCACGGAGTACGAGCAGCGGATGCATGAGGAGGAGCTGAAGAATCAGGC
AATGATTAGCAGTTTCGCCAAGCCCTGCCCTGGATGCGGGAATCCCGTCG
AGAAAGCGGGTGGGTGCAACCAAATGTTCTGCGTGTGGTGCGGCGAGCAC
TGGTGCTGGCTTTGCGGCAAGTTCGTGGACAAAGGAACCTTCCCCAATCA
TTTCCAGTGGTGGAACGTCCGCGGCTGCCCCAACATGCAGATGCAGGAAG
ACGTGGCACCTCCTTCTCCCTCCCACATTCGCTGGATGAAGGTCGTCTCT
TTCCTGCAGCTGGTGTTTGTCGGCCCGGCAGCCTTCGTCCTCGGTACTGT
GTTTTATCTCCTCTGCTTTCCTTGCTTTTTGTTCAAATGCATCGGACAAA
GGGAAAGAGAAGAGGAAGAGGGGGGAGAAGGGGAAGGGGAAAGGGAAGGA
GGGAGGGATTCAAGGGATGGGAGGGAAGACGGGGGGGAGGAAGGGGAGAG
GGAACTACGGCAGCAATACACCGGATGTGTCAGTTTTTGGGGAAACACGC
TCCTAGGGCTCTTGTTGATACCCTTTTTCTTGACTATCCTGCTCCTTTGT
TTTGTGGTCACGTTCATCCAAGTTCTGGTGACGAGTATCAATACGAGGTT
TGGAGTGTGTTGTGGCGCGAAGGGTGGAAGAAGAGGGGGAGGTAGGGGGG
AAGGAGGGGAGGGACGGGTGGCGGCGACTGTTGTGGCGGGGTTGGGAAGT
ACGGCAGTGGCTATGACGAGGAGTTTGAGTCGAGGGGGAGCAGGAGAAAG
AGGGGAAGCAGGGTTAGGAGCCGGAGCAGAAGGGGGAGCAGGGGCAGCAG
CCGGAGCTGGAGGAGGAGGAGGACGACGACGAGTAGGAGGCAGTTGA back to top
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