NO03G05070, NO03G05070 (gene) Nannochloropsis oceanica

Overview
NameNO03G05070
Unique NameNO03G05070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length657
Alignment locationchr3:1436194..1436850 +

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Properties
Property NameValue
Description60s acidic ribosomal protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1436194..1436850 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of NO03G05070 vs. NCBI_GenBank
Match: EWM29947.1 (60s acidic ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 130.2 bits (326), Expect = 4.300e-27
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0
Query:    1 MSNLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLAGKMEDLITSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGMDMFGGGGDGY 120
            MSNLTK+QKDELVTSYAALALYDGDSE+SSEQL+AFI ATGNEVEPYWPM+FSKFL GKMEDLITSV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G MDMF GGGDGY
Sbjct:    1 MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLGGAMDMF-GGGDGY 118          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: CBN75193.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.6 bits (205), Expect = 4.700e-13
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    3 NLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA 58
            +++K+  DEL TSYAALALYDGD+EI+S+QL+A ITATGNEVE YWP LFS FLA
Sbjct:    2 SISKELHDELCTSYAALALYDGDAEITSDQLSALITATGNEVEGYWPTLFSGFLA 56          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: CCA22595.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 80.1 bits (196), Expect = 5.100e-12
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 0
Query:    4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLITS 67
            L+K+Q DEL  SYA+L L+DG++EI+S+ L + ITA+GNEVEPYWP LF+ FL+  G++ DLITS
Sbjct:    3 LSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITS 67          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: CCI42422.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 80.1 bits (196), Expect = 5.100e-12
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 0
Query:    4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLITS 67
            L+K+Q DEL  SYA+L L+DG++EI+S+ L + ITA+GNEVEPYWP LF+ FL+  G++ DLITS
Sbjct:    3 LSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITS 67          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: XP_009835866.1 (hypothetical protein H257_10853, partial [Aphanomyces astaci] >ETV74779.1 hypothetical protein H257_10853, partial [Aphanomyces astaci])

HSP 1 Score: 79.3 bits (194), Expect = 8.800e-12
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 0
Query:    4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLI 65
            +TK+Q DEL  SYAAL L+DGD+EI+SE L+  ITA+GNEVEPYWP LF+  L+  GK+ +LI
Sbjct:   27 ITKEQHDELAVSYAALVLFDGDAEITSEALSNVITASGNEVEPYWPTLFAGLLSKEGKLLELI 89          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: XP_012193943.1 (hypothetical protein SPRG_00459 [Saprolegnia parasitica CBS 223.65] >KDO35615.1 hypothetical protein SPRG_00459 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-11
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 0
Query:    4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLIT 66
            LTK+Q DEL  +YA++ L+DG++EI+SE L+  I A+GNEVEPYWPMLF+  L+  GKM +LIT
Sbjct:    3 LTKEQHDELCVAYASMILFDGEAEITSEALSNVIVASGNEVEPYWPMLFANLLSQDGKMLELIT 66          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: XP_008607293.1 (hypothetical protein SDRG_03437 [Saprolegnia diclina VS20] >EQC39232.1 hypothetical protein SDRG_03437 [Saprolegnia diclina VS20])

HSP 1 Score: 77.8 bits (190), Expect = 2.600e-11
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 0
Query:    4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLIT 66
            LTK+Q DEL  +YA++ L+DG++EI+SE L   I A+GNEVEPYWPMLF+  L+  GKM +LIT
Sbjct:   30 LTKEQHDELCVAYASMILFDGEAEITSEALANVIVASGNEVEPYWPMLFANLLSQDGKMLELIT 93          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: XP_008868587.1 (hypothetical protein H310_05609 [Aphanomyces invadans] >ETW03203.1 hypothetical protein H310_05609 [Aphanomyces invadans])

HSP 1 Score: 77.8 bits (190), Expect = 2.600e-11
Identity = 85/116 (73.28%), Postives = 96/116 (82.76%), Query Frame = 0
Query:    4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLITSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGMDMFGGGGD 118
            +TK+Q DEL  SYAAL L+DG++EI+SE L+  I A+GNEVEPYWP LF+  L+  GKM +LIT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   MDMFGGG D
Sbjct:    3 ITKEQHDELAVSYAALILFDGEAEITSEALSTVIAASGNEVEPYWPTLFAGLLSKDGKMLELITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDMFGGGSD 118          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: OQR98783.1 (hypothetical protein ACHHYP_07873 [Achlya hypogyna])

HSP 1 Score: 77.4 bits (189), Expect = 3.300e-11
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 0
Query:    4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLI 65
            LTK+Q DEL  +YA++ L+DG++EI+SE L+  I A+GNEVEPYWPMLF+  L+  GKM +LI
Sbjct:    3 LTKEQHDELCVAYASMILFDGEAEITSESLSNVIAASGNEVEPYWPMLFANLLSKDGKMLELI 65          
BLAST of NO03G05070 vs. NCBI_GenBank
Match: EJK66365.1 (hypothetical protein THAOC_12722 [Thalassiosira oceanica])

HSP 1 Score: 76.3 bits (186), Expect = 7.400e-11
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 0
Query:    1 MSNLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGN-EVEPYWPMLFSKFL-AGKMEDLITS 67
            M  LTKDQKDE  TS+AA+ALYDG ++ISSEQ+N  + ATGN EV  ++P++FS FL A K+ ++I S
Sbjct:    1 MDKLTKDQKDEYATSFAAIALYDGGADISSEQINTLLEATGNTEVAAFYPIIFSNFLSAEKISEMIVS 68          
The following BLAST results are available for this feature:
BLAST of NO03G05070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29947.14.300e-2789.9260s acidic ribosomal protein [Nannochloropsis gadi... [more]
CBN75193.14.700e-1372.73conserved unknown protein [Ectocarpus siliculosus][more]
CCA22595.15.100e-1260.00conserved hypothetical protein [Albugo laibachii N... [more]
CCI42422.15.100e-1260.00unnamed protein product [Albugo candida][more]
XP_009835866.18.800e-1261.90hypothetical protein H257_10853, partial [Aphanomy... [more]
XP_012193943.11.100e-1159.38hypothetical protein SPRG_00459 [Saprolegnia paras... [more]
XP_008607293.12.600e-1159.38hypothetical protein SDRG_03437 [Saprolegnia dicli... [more]
XP_008868587.12.600e-1173.28hypothetical protein H310_05609 [Aphanomyces invad... [more]
OQR98783.13.300e-1158.73hypothetical protein ACHHYP_07873 [Achlya hypogyna... [more]
EJK66365.17.400e-1157.35hypothetical protein THAOC_12722 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005373NSK005373Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05070.1NO03G05070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667595gene_1714Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100247g11gene698Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05070.1NO03G05070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05070 ID=NO03G05070|Name=NO03G05070|organism=Nannochloropsis oceanica|type=gene|length=657bp
ATGTCCAACTTGACCAAGGACCAGAAGGACGAGCTTGTCACTTCTTACGC
CGCCCTGGCCCTCTACGACGGCGATgtgagtagcagaagtagcaggaaag
agggaggggaagagggaatggtcgggggggaaatgggtggaaaatgccag
ggatgcaggcgactgcttcttccatctccacgccgtttccacctcacctc
ctcttggtgatttttaccaacaagaaaggggactggaggatcctatttca
atgagggtggatgcacgcgtgtggcgagcggcaaccagctccttccttcc
tgtctgatttcaccgctcagcattctgactctccttctctccttccctcc
cccgcctcccaacatcacacagTCCGAAATCTCCTCTGAGCAGCTCAATG
CCTTTATTACCGCCACCGGCAACGAGGTAGAGCCGTACTGGCCCATGCTT
TTCTCCAAGTTCTTGGCCGGTAAGATGGAGGACCTCATCACCAGCGTCGG
TGGGGGGGGGGGCGCTGCTGCTCCTGCGGGCGCGGCGGCTGCGGCACCGG
AGGCTGCTCCGGAGGCGGGAAAGAAGGAGAAGAAGGAGGAGAAGGAGGAG
GATGCGGATTTGGCCGGGGGGATGGATATGTTCGGGGGTGGGGGTGATGG
CTACTAA
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protein sequence of NO03G05070.1

>NO03G05070.1-protein ID=NO03G05070.1-protein|Name=NO03G05070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MSNLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPM
LFSKFLAGKMEDLITSVGGGGGAAAPAGAAAAAPEAAPEAGKKEKKEEKE
EDADLAGGMDMFGGGGDGY*
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Synonyms
Publications