NO03G05070.1, NO03G05070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05070.1
Unique NameNO03G05070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length360
Alignment locationchr3:1436194..1436850 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1436194..1436850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05070.1 vs.
Match: EWM29947.1 (60s acidic ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 2.400e-41
Identity = 97/119 (81.51%), Postives = 101/119 (84.87%), Query Frame = 0 
Query:    1 MSNLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLAGKMEDLITSVGGGGGAAAPAGAAAAAPEAAPEAGKKEKKEEKEEDADLAGGMDMFGGGGDGY 120
            MSNLTK+QKDELVTSYAALALYDGDSE+SSEQL+AFI ATGNEVEPYWPM+FSKFL GKMEDLITSVGGGGG  A A  A  A  AA    KKEKKEEKEEDADL G MDMF GGGDGY
Sbjct:    1 MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMF-GGGDGY 118
The following BLAST results are available for this feature:
BLAST of NO03G05070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29947.12.400e-4181.5160s acidic ribosomal protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05070NO03G05070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05070.1NO03G05070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05070.1.cds1NO03G05070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05070.1.cds2NO03G05070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05070.1 ID=NO03G05070.1|Name=NO03G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=360bp
ATGTCCAACTTGACCAAGGACCAGAAGGACGAGCTTGTCACTTCTTACGC
CGCCCTGGCCCTCTACGACGGCGATTCCGAAATCTCCTCTGAGCAGCTCA
ATGCCTTTATTACCGCCACCGGCAACGAGGTAGAGCCGTACTGGCCCATG
CTTTTCTCCAAGTTCTTGGCCGGTAAGATGGAGGACCTCATCACCAGCGT
CGGTGGGGGGGGGGGCGCTGCTGCTCCTGCGGGCGCGGCGGCTGCGGCAC
CGGAGGCTGCTCCGGAGGCGGGAAAGAAGGAGAAGAAGGAGGAGAAGGAG
GAGGATGCGGATTTGGCCGGGGGGATGGATATGTTCGGGGGTGGGGGTGA
TGGCTACTAA
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protein sequence of NO03G05070.1

>NO03G05070.1-protein ID=NO03G05070.1-protein|Name=NO03G05070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MSNLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPM
LFSKFLAGKMEDLITSVGGGGGAAAPAGAAAAAPEAAPEAGKKEKKEEKE
EDADLAGGMDMFGGGGDGY*
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mRNA from alignment at chr3:1436194..1436850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05070.1 ID=NO03G05070.1|Name=NO03G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at chr3:1436194..1436850+ (Nannochloropsis oceanica)
ATGTCCAACTTGACCAAGGACCAGAAGGACGAGCTTGTCACTTCTTACGC
CGCCCTGGCCCTCTACGACGGCGATGTGAGTAGCAGAAGTAGCAGGAAAG
AGGGAGGGGAAGAGGGAATGGTCGGGGGGGAAATGGGTGGAAAATGCCAG
GGATGCAGGCGACTGCTTCTTCCATCTCCACGCCGTTTCCACCTCACCTC
CTCTTGGTGATTTTTACCAACAAGAAAGGGGACTGGAGGATCCTATTTCA
ATGAGGGTGGATGCACGCGTGTGGCGAGCGGCAACCAGCTCCTTCCTTCC
TGTCTGATTTCACCGCTCAGCATTCTGACTCTCCTTCTCTCCTTCCCTCC
CCCGCCTCCCAACATCACACAGTCCGAAATCTCCTCTGAGCAGCTCAATG
CCTTTATTACCGCCACCGGCAACGAGGTAGAGCCGTACTGGCCCATGCTT
TTCTCCAAGTTCTTGGCCGGTAAGATGGAGGACCTCATCACCAGCGTCGG
TGGGGGGGGGGGCGCTGCTGCTCCTGCGGGCGCGGCGGCTGCGGCACCGG
AGGCTGCTCCGGAGGCGGGAAAGAAGGAGAAGAAGGAGGAGAAGGAGGAG
GATGCGGATTTGGCCGGGGGGATGGATATGTTCGGGGGTGGGGGTGATGG
CTACTAA
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Coding sequence (CDS) from alignment at chr3:1436194..1436850+

>NO03G05070.1 ID=NO03G05070.1|Name=NO03G05070.1|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at chr3:1436194..1436850+ (Nannochloropsis oceanica)
ATGTCCAACTTGACCAAGGACCAGAAGGACGAGCTTGTCACTTCTTACGC
CGCCCTGGCCCTCTACGACGGCGATTCCGAAATCTCCTCTGAGCAGCTCA
ATGCCTTTATTACCGCCACCGGCAACGAGGTAGAGCCGTACTGGCCCATG
CTTTTCTCCAAGTTCTTGGCCGGTAAGATGGAGGACCTCATCACCAGCGT
CGGTGGGGGGGGGGGCGCTGCTGCTCCTGCGGGCGCGGCGGCTGCGGCAC
CGGAGGCTGCTCCGGAGGCGGGAAAGAAGGAGAAGAAGGAGGAGAAGGAG
GAGGATGCGGATTTGGCCGGGGGGATGGATATGTTCGGGGGTGGGGGTGA
TGGCTACTAA
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Synonyms
Publications