NO03G04980, NO03G04980 (gene) Nannochloropsis oceanica

Overview
NameNO03G04980
Unique NameNO03G04980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2286
Alignment locationchr3:1415114..1417399 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA primase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1415114..1417399 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006269DNA replication, synthesis of RNA primer
GO:0009058biosynthetic process
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003896DNA primase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR014052DNA_primase_ssu_euk/arc
IPR002755DNA_primase_S
Homology
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_009035193.1 (hypothetical protein AURANDRAFT_58835 [Aureococcus anophagefferens] >EGB10393.1 hypothetical protein AURANDRAFT_58835 [Aureococcus anophagefferens])

HSP 1 Score: 404.8 bits (1039), Expect = 3.700e-109
Identity = 213/449 (47.44%), Postives = 277/449 (61.69%), Query Frame = 0
Query:   35 EFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRR---LTTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            +F  +LLR +Y RLFPY+ M KWL+Y    D+          ++RE S T+ DD+YIRYQ F DA  M+  + K+QPHKIDIGAVF   PKDH ++K   F+P EREL+FDID++DYDD+RTCC GA +C KCW +MT A +V +++LREDFGF+ ++WVYSGRRGVHCWV D + R LTN+ R A+++Y S+  GNEN++   K   L  PLHPS  RA+ +LEP+F   V+ E+GQ +L S   W  LL +LP ED+A ++ +   R    +T  ++W  +K    +                               ELWKYEVVF +CYPRLD NVSK  NHLLKSPFA HPKTGRVCVP D      FDP  V TLK LA QIDA   +         V D +KT+LK AV   EK  ++P+   + K  R E+E+ AAM+GDF
Sbjct:   15 KFDADLLRMYYARLFPYEQMCKWLAYQPHGDASTPVGTGSTLAKRELSLTLADDVYIRYQCFGDAKAMKELMTKRQPHKIDIGAVFNASPKDHLSIK--NFRPEERELVFDIDLSDYDDVRTCCQGATVCRKCWQYMTCACRVCESSLREDFGFEHIMWVYSGRRGVHCWVGDAESRKLTNEARLAIIKYFSVVGGNENSA---KKTDLQAPLHPSLERAYKLLEPLFIKHVIPEDGQKLLASPEHWSKLLATLP-EDIADQIAKHWARAGDASTPAQKWDALKGLCASPDRGSSAKKQKRAQVD---------------ELWKYEVVFTHCYPRLDENVSKHRNHLLKSPFAAHPKTGRVCVPFDAKQCAAFDPTAVVTLKDLAKQIDASTED---------VPDLEKTDLKHAVRFFEKSFIDPLLKSLHKGQRDEKEQQAAMVGDF 433          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_008610885.1 (DNA primase, eukaryotic-type, small subunit [Saprolegnia diclina VS20] >EQC35568.1 DNA primase, eukaryotic-type, small subunit [Saprolegnia diclina VS20])

HSP 1 Score: 404.4 bits (1038), Expect = 4.800e-109
Identity = 215/450 (47.78%), Postives = 270/450 (60.00%), Query Frame = 0
Query:   33 DQEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTT--AEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++ FSPELL  +Y RLFPY+ M KWL Y  D   + G    +  SRREFSFT+ +D+YIRY++FRDA E +A ++K  P KIDIGAVFT+ P D   V A  F P EREL+FD+D+TDYDD+RTCC  AKIC +CW FM  AVKV+DTALREDFGFQ L+WVYSGRRG+HCWV D   R LTND RSAVV+YL+   GNEN   K     L  PLHPS  RA+ ILEP+F   +L ++GQG+L S   W  LL+ +PDED+      +  +        +W  +K  +H    +                          L     E+VF Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPIDP  ID FDP  VPTL  L  Q++  + +H      +  +DY K        L +   + P+ L + K+ ++  E  AA  GD+
Sbjct:    3 NESFSPELLGLYYDRLFPYELMTKWLGY--DCSMDKGGPGTELLSRREFSFTLENDVYIRYKAFRDADEFKAEMKKLMPFKIDIGAVFTVSPADKGKVDASKFVPEERELVFDVDLTDYDDVRTCCQDAKICARCWRFMVAAVKVLDTALREDFGFQHLMWVYSGRRGIHCWVSDYTARMLTNDARSAVVQYLTTVEGNENTKRK---VVLRDPLHPSLERAYTILEPLFHDIILSDDGQGILSSPEHWKKLLEMVPDEDMRATFHNKWLKNPNEPPATKWASLKAAIHEALTSKKRKQLGDDKRR-------------LLGTCIAEIVFAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDPRKIDTFDPDTVPTLADLERQLNGEETKH-----VKPFADYTK--------LFDAKFIHPIQLALIKQKKVLAETQAAATGDW 421          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: ETP45022.1 (hypothetical protein F442_08487 [Phytophthora parasitica P10297])

HSP 1 Score: 404.1 bits (1037), Expect = 6.200e-109
Identity = 216/452 (47.79%), Postives = 277/452 (61.28%), Query Frame = 0
Query:   34 QEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRL---TTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALEL--WKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++FS ELL+ +Y RLFPYQ M +WLSY      +GG    +F  RRE S+T+ +D YIRY++F +A E++ ++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIRTCC GA IC +CW FM  AVKV++ ALREDFGF+ LLWVYSGRRG+HCWV DE  R L N+ RSAV+ YLSL  GNEN + K K   L  PLHPS  RA+ +LEP+FE  +L ++GQG++ SE  W+ LL  +PDED+   + R        T   E+WRE++  +  +                            A EL     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID  +++ FDPFKVPTL  L  ++D               SD   T +K  V+  E   ++P+A V K++ R  R   AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY------DGG---EEFLFRRELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENLARKVK---LREPLHPSLDRAYRLLEPLFEDMILSDKGQGIMCSEKQWNKLLAMVPDEDIRANMTRRWSATNCNTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELD---------------SDKSATSMKKYVDFFESSFMKPLAAVAKRKERDARVSDAAMTGDW 428          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: EJK44484.1 (hypothetical protein THAOC_36967 [Thalassiosira oceanica])

HSP 1 Score: 402.9 bits (1034), Expect = 1.400e-108
Identity = 225/498 (45.18%), Postives = 300/498 (60.24%), Query Frame = 0
Query:    2 STASSSRRTSTS-GTKDKDSMDVAGPATPAVNDQEFSPELLRFFYTRLFPYQAMFKWLSY-------GNDPDSEGGHVVRDFFSRREFSFTI----NDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTC-CTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDE--DLALKL-RREMRRLTTAEERWREIK---TQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            +T++   RTS+S G     + +    ++PA     FSPELL  +Y+RLFPY  ++ WLSY       GN+  +         F RREFS TI     +++YIRYQSF    E+  AIQK++P KIDIGAVF  PPKD+ ++ +   +  EREL+FDID+TDYDD+R C C+GAKIC KCW FM MA+KV+D  LR+DFGF+ L W YSGRRGVHCWVCDE  R L+ND RSAV  Y  +  G+E N    KN  +T P+HP+ +RA+ +LEP F   VL EEG G++ S   W  LL +LP+    +A KL ++  +  +T  E+W E+K     L  KTG+                          +E W  E VF+Y YPRLD+NVSK  NHLLKSPF VHPKTGRVCVPI+  + D FDPF VPTL  L  ++D Y+AE+ +DE    + D++KT LKG  E  +K  ++P+   + +  R+ RER    I  +
Sbjct:   18 TTSTKKARTSSSQGAPSTSTTNAGNKSSPADASVVFSPELLAMYYSRLFPYHMLYSWLSYDPATAKPGNNAKAGSSLGSACTFPRREFSMTIEPQPGNEVYIRYQSFLSQDELMEAIQKRRPVKIDIGAVFNYPPKDNKSLPSGKLQTQERELVFDIDLTDYDDVRNCGCSGAKICGKCWKFMGMAIKVMDEGLRKDFGFKNLAWFYSGRRGVHCWVCDESARKLSNDARSAVASYFEVDLGSEKN----KNFHITSPVHPTLSRAYRVLEPEFVKDVLPEEGHGIMSSRKMWTKLLTTLPESCMSVADKLDKKWQKENSTPREKWVELKKGIMTLIGKTGH------------AKAQKNLSNSERVKIEHWPMETVFRYTYPRLDINVSKMQNHLLKSPFCVHPKTGRVCVPIEVDSADCFDPFAVPTLAQLMTELDDYEAENGKDE---SIEDWQKTSLKGPFENFQKKFLKPL---LDEERRILRERREMSIASW 493          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_013762614.1 (DNA primase [Thecamonas trahens ATCC 50062] >KNC48557.1 DNA primase [Thecamonas trahens ATCC 50062])

HSP 1 Score: 396.0 bits (1016), Expect = 1.700e-106
Identity = 212/447 (47.43%), Postives = 274/447 (61.30%), Query Frame = 0
Query:    6 SSRRTSTSGTKDKDSMDVAGPAT-----PAVNDQEFSPELLRFFYTRLFPYQAMFKWLSYGN----------------------DPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRL--TTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWK----YEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQI 420
            S  +  + GTK +    VAG A+     P     EF PELLRF+Y+RLFP+   F+WLSYG+                          +G  +   + SRREFSFT+ DD+YIRYQSF  AAE+EA I+KK+P KIDIGAV+  PPKDH T+ A AFKP+E+EL+FDIDMTDYD++RTCC+GA IC KCW FMT+A++V+DTALREDFGF+ LLWVYSGRRG+HCWVCD   R L+ +GRSAV EYL+L RG+E++   G+   +T P+HPS  RA  ++E  FE  VL  E QG+      WD +L  + DE     +R  + +     A   W  IK                                MYA   ++     E++ ++CYPRLD++VSKG+NHLLKSPF VHPKTGRVCVP+DP  + DF PF VPT+  LAA++
Sbjct:   17 SPEKDESRGTKRRVDEVVAGEASQVNVAPTELSDEF-PELLRFYYSRLFPFAPFFEWLSYGDVSGTSVAAATGLXXXXXXXXXXXXRGDGMGLQGSYVSRREFSFTLEDDVYIRYQSFASAAELEAEIRKKRPFKIDIGAVYNAPPKDHKTIPAGAFKPLEKELVFDIDMTDYDEVRTCCSGADICTKCWPFMTIAIRVLDTALREDFGFEHLLWVYSGRRGIHCWVCDPRARALSQNGRSAVAEYLNLIRGSEDS---GRKVFVTTPMHPSVERAAAVVEEYFEELVL--EEQGMFGCAERWDKILPLISDESARAGIRNALIQQDGDNALGVWEGIK-------------------------------DMYAQNSYRSADLTEIMLQFCYPRLDIHVSKGLNHLLKSPFCVHPKTGRVCVPLDPARVADFSPFDVPTVSQLAAEL 426          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_022093945.1 (DNA primase small subunit-like isoform X1 [Acanthaster planci])

HSP 1 Score: 396.0 bits (1016), Expect = 1.700e-106
Identity = 208/433 (48.04%), Postives = 263/433 (60.74%), Query Frame = 0
Query:   28 TPAVNDQEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYD------AEHAQDEVARGVSDYKKTELKGAVELLEKCV 455
            TPAV  Q+  P+LL  +Y RLFPY   F+WL+YG  P S        +F  REFSFT+ DDIYIRYQSF D +EME  IQK+ P+KIDIGAVFT  PKDH TVKA +F+  E+EL+FDIDMTDYDD+R+CC GA IC KCW  M +AV++VD AL++DFGF   LWVYSGRRGVHCWV DE  R L+ + RSA+ EYLSL +G EN   + K   L   LHPS   A  I+   FE      + QG+L  + SWD +L  +PD +L   L   M +  TA +RW  ++  +  +                             L L   E+ F+YCYPRLDVNVSKGINHLLKSPF +HPKTGRVCVP     +DDFDP  VP +  L  +ID +D       +  +    + + DYKKT +  +V++ E+ V
Sbjct:   15 TPAVYCQDELPDLLPVYYKRLFPYNQYFRWLNYGGVPKS--------YFPNREFSFTLKDDIYIRYQSFADQSEMEKEIQKRCPYKIDIGAVFTHRPKDHRTVKATSFQAQEKELVFDIDMTDYDDVRSCCQGADICEKCWPLMKIAVRIVDRALQDDFGFDHRLWVYSGRRGVHCWVADETARKLSQNARSAIAEYLSLVKGGEN---QVKKVNLPEHLHPSVEYARQIINHYFEDYAF--QKQGLLSDKASWDKILAIVPDSNLRKLLSDHMEKAKTAVDRWDRLERCIKGEVSKGNVKK--------------------CLHL-ATEIKFQYCYPRLDVNVSKGINHLLKSPFCIHPKTGRVCVPFSAKNVDDFDPKTVPDISRLCREIDEFDRRQKAACDENEPPTKKRIKDYKKTSILQSVQVFEEFV 413          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: KUF89734.1 (DNA primase [Phytophthora nicotianae])

HSP 1 Score: 395.2 bits (1014), Expect = 2.900e-106
Identity = 212/452 (46.90%), Postives = 276/452 (61.06%), Query Frame = 0
Query:   34 QEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRL---TTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALEL--WKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++FS ELL+ +Y RLFPYQ M +WLSY      +GG    +F  RRE S+T+ +D YIRY++F +A E++ ++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIRTCC GA IC +CW FM  AVKV++ ALREDFGF+ LLWVYSGRRG+HCWV DE  R L N+ RSAV+ YLSL  GNEN++ K K   L      + +RA+ +LEP+FE  +L ++GQG++ SE  W+ LL  +PDED+   + R        T   E+WRE++  +  +                            A EL     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID  +++ FDPFKVPTL  L  ++D               SD   T +K  V+  E   ++P+A V K++ R  RE  AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY------DGG---EEFLFRRELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENSARKVKLHLLLTFFLLTDSRAYRLLEPLFEDMILSDKGQGIMCSEKQWNKLLAMVPDEDIRAXMTRRWSATNCNTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELD---------------SDKSATSMKKYVDFFESSFMKPLAAVAKRKERDARESDAAMTGDW 431          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_011680545.1 (PREDICTED: DNA primase small subunit-like [Strongylocentrotus purpuratus])

HSP 1 Score: 394.4 bits (1012), Expect = 4.900e-106
Identity = 204/425 (48.00%), Postives = 261/425 (61.41%), Query Frame = 0
Query:   38 PELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHA-------QDEVARGVSDYKKTELKGAVELLEKCVV 456
            PELL  +Y RLFP+   ++WL+YG  P S        +F  REFSFT+ +DIYIRYQSF D  EME  IQK+ P+KIDIGAVFT  PKDH T+KA AF+  E+EL+FDIDMTDYDD+R+CC GA IC KCW  MT+A+K+VD+AL EDFGF+  LWVYSGRRGVHCWVCDE  R L+ + RSA+ EYLS+ +G EN   + K   L   LHPS  RA  ++   FE   L +  Q +L  + SW  +L  +PD+ L   L  +M + + + ERW+ ++ ++  +                                   E+ F+YCYPRLDVNVSKG+NHLLKSPF VHPKTGRVCV +D   +D FDP  VP +  L  +ID YD ++        Q    + + DYKKT L   VE+ EK VV
Sbjct:   20 PELLPVYYKRLFPFGPYYRWLNYGGAPKS--------YFLNREFSFTLENDIYIRYQSFSDQNEMEKEIQKRCPYKIDIGAVFTHKPKDHRTLKAAAFQAQEKELVFDIDMTDYDDVRSCCQGADICSKCWPLMTIAIKIVDSALYEDFGFEHRLWVYSGRRGVHCWVCDEAARKLSQNARSAIAEYLSIVKGGEN---QVKKVSLPDQLHPSVERAKQVIVSYFEDYALNK--QDILGDKESWKKVLALVPDDTLRGHLENDMTKGSNSLERWKLLRERVSREVSVGRAKRCGQLVA---------------------EIAFQYCYPRLDVNVSKGVNHLLKSPFCVHPKTGRVCVAMDTAELDRFDPLAVPDISQLCLEIDEYDRKNQPTENDENQPPTKKRIKDYKKTSLLKNVEVFEKFVV 410          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: OQR91020.1 (DNA primase small subunit [Achlya hypogyna])

HSP 1 Score: 391.3 bits (1004), Expect = 4.200e-105
Identity = 210/451 (46.56%), Postives = 267/451 (59.20%), Query Frame = 0
Query:   34 QEFSPELLRFFYTRLFPYQAMFKWLSYG--NDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLT--TAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++FSPELL  +Y RLFPY+ M KWL Y    + D+  G    +  SRREFSFT+  D YIRY++FRDA E +  +++  P+KIDIGAVF++ P D   V +  F P EREL+FD+D+TDYDDIRTCC  AKIC +CW FM  AV V+D ALREDFGFQ L+WVYSGRRG+HCWV D   R LTND R+AVV+YL+   GNEN   K     L  PLHPS  RA+ ILEP+F   +L E GQ +L S + W  LL+ +PDE+L      +  + T  T + +W E+K+ +     +                          L     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPIDP  I+ FDP  VPTL  L  Q++  D  H Q       +DY        V+  +   + P+ L + K+ +   E  AA  GD+
Sbjct:    3 EKFSPELLSLYYDRLFPYEQMTKWLGYDTRQEKDASSG---TELLSRREFSFTLESDQYIRYKAFRDADEFKTEMKRLMPYKIDIGAVFSVSPADKGKVDSSKFIPEERELVFDVDLTDYDDIRTCCQDAKICARCWQFMVAAVLVLDRALREDFGFQHLMWVYSGRRGIHCWVSDYTARMLTNDARAAVVQYLTTVEGNENTKRK---VILKDPLHPSLERAYSILEPLFNDMILSESGQDILSSPDHWSKLLEMVPDEELRSTFHHKWLKTTELTPQAKWTELKSAIQTAINDKKRKLADDRRRN--------------LRTCVAEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDPRKIEAFDPETVPTLADLERQLNGEDTPHVQ-----RFADY--------VKFFDAKFLHPIQLALIKQQKAVAEAQAAATGDW 420          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_020902434.1 (DNA primase small subunit-like [Exaiptasia pallida])

HSP 1 Score: 391.0 bits (1003), Expect = 5.500e-105
Identity = 207/440 (47.05%), Postives = 271/440 (61.59%), Query Frame = 0
Query:   38 PELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLT-TAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYD----AEHAQDEV--ARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMER 471
            PELL+ +Y RLFPY+  + WLSYGN P        +  F+ REF FT+ DDIY+RYQSF +  EME  IQK+ P KIDIGAVFT  PKDH  +KA +F+  E+EL+FDIDMTDYD+IRTCC GA+ICPKCW FM +A+K++D AL+EDFGF   LWVYSGRRGVHCWVCD   R L+   RSAV EYLS+ +G ++   K K   L  PLHP  AR+  IL   F+  ++ E  Q +L  +  WD +L  + D+ +  KL         ++EERW +++  L +                             ++ +   E++F+Y YPRLD+NV+KG+NHLLKSPF VHPKTGRVCVPID    D FDPF VPT+  L  +ID YD    +E  +DE    + VS ++KT L  A+    K ++ P+     KR +MER
Sbjct:   21 PELLQQYYKRLFPYKYYYHWLSYGNVP--------KTCFTNREFCFTLKDDIYVRYQSFSNQDEMEKEIQKRNPFKIDIGAVFTHKPKDHKMIKAASFQAXEKELVFDIDMTDYDEIRTCCKGAEICPKCWKFMVVAMKILDVALKEDFGFNHRLWVYSGRRGVHCWVCDXAARKLSQSARSAVAEYLSVIKGGDS---KTKKVNLRKPLHPHLARSEKILSEYFKDFIINE--QDILSCKERWDGVLALVNDDSIRTKLDTVWSSSNKSSEERWEQLQAALESAKP--------------------------SVSIALQEIMFQYTYPRLDINVTKGLNHLLKSPFCVHPKTGRVCVPIDIEEADTFDPFSVPTISNLLEEIDDYDLNNVSETVEDEALKKKSVSAFEKTSLVKAIRTFRKFLM-PLQAENDKRRKMER 420          
The following BLAST results are available for this feature:
BLAST of NO03G04980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009035193.13.700e-10947.44hypothetical protein AURANDRAFT_58835 [Aureococcus... [more]
XP_008610885.14.800e-10947.78DNA primase, eukaryotic-type, small subunit [Sapro... [more]
ETP45022.16.200e-10947.79hypothetical protein F442_08487 [Phytophthora para... [more]
EJK44484.11.400e-10845.18hypothetical protein THAOC_36967 [Thalassiosira oc... [more]
XP_013762614.11.700e-10647.43DNA primase [Thecamonas trahens ATCC 50062] >KNC48... [more]
XP_022093945.11.700e-10648.04DNA primase small subunit-like isoform X1 [Acantha... [more]
KUF89734.12.900e-10646.90DNA primase [Phytophthora nicotianae][more]
XP_011680545.14.900e-10648.00PREDICTED: DNA primase small subunit-like [Strongy... [more]
OQR91020.14.200e-10546.56DNA primase small subunit [Achlya hypogyna][more]
XP_020902434.15.500e-10547.05DNA primase small subunit-like [Exaiptasia pallida... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005384NSK005384Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04980.1NO03G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522264gene_1705Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100351g4gene708Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04980.1NO03G04980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04980 ID=NO03G04980|Name=NO03G04980|organism=Nannochloropsis oceanica|type=gene|length=2286bp
AGGCACAGGACGCCGCTGTAGCAACGATTTCCTCCTTTGGCTTTCTGCGC
CTGAGTGCTTGCCCTGTTCCATACAACAAAGACAAGCTCCTAGCATGAGC
ACAGgtaggcaacggcagtacgatacgcgacaccacgtgcattttaccct
tttctttgatggtcctaggaagggcacctttggtttgcccttgcgcgcat
gtatcttttcctttttctttttcccgccttctccacttcccttccgccgt
gccgcacatagaggctcggacgcgttcgcaaatgatgcagcatggccatc
cttttgtttttttggtgagcgtggaattatgccaggccctttttcttcgc
ctggattgtagtctgctctcttttgtcccacccaccaccagcatcaatca
tggccaggccccactagcccagccctccccctccatctcccatgcacata
cacatttctatctcctcctccagaatcacgcctctacctattgtagtcat
gatccttctgcccatacttattccttcgtacctcaaccgactatgaacac
agCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGACAAGGACA
GCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACCAGGAATTC
AGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCGTATCAAGC
CATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGAGGGTGGGC
ATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTACCATCAAC
GATGACATCTACATCCGTTACCAATCTTTCCGGGATGCCGCGGAAATGGA
GGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGGGGCCGTGT
TTACGATGCCCCCGAAGGACCATCACACTGTCAAGGCCGAGgtaggttgc
aggttggggcatagaggggggtgggggagggagggggaaagtatactgcc
agtaacactaccgacacccattgcatctactctatggtgctcatatttcg
tatgtacttattttctcccttccttttcctccctctcttttgctagGCCT
TCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGACTAC
GACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATGCTG
GATTTTTATGACCATGGCCGTTAAAGTTGTCGATACGGCCCTCCGTGAGG
ACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGCGTG
CATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGGGCG
GAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACAACA
GTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCTTTT
GCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTTAGG
GGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGCTTC
TAGACAGTCTGCCGGATGAAGACCTGGCACTAAAGCTGAGGAGGGAGATG
AGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCAGTT
GCATGCGAAGACTGGTAATAGTGGAGGTGGGGCCAGGCGACAAAGTCGAG
GAGGATCGCTTGGTGGGGGAGGGAGGGGGGGAGGGGGGATGTATGCACTT
GAGTTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCTGGA
CGTGAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTGCGG
TGCACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCAATT
GATGACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGCTCA
GATTGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGGGTG
TGTCTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTGGAG
AAGTGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAGGAT
GGAGAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAGAGGGAGAGGG
AGGGGTAGGGGGTGATTAAGGTGCTGAGACGATGCTCACGCAGTAAGGAT
TGGAAAAAGGTTGAAACGAAAGGCAGGCAGCAGGACAACCACACGCGAAA
AAGTAAACTAGCAGCAAGGAGACGCCTTCAGTCTCG
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protein sequence of NO03G04980.1

>NO03G04980.1-protein ID=NO03G04980.1-protein|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MSTASSSRRTSTSGTKDKDSMDVAGPATPAVNDQEFSPELLRFFYTRLFP
YQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAA
EMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTD
YDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRG
VHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPS
FARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRRE
MRRLTTAEERWREIKTQLHAKTGNSGGGARRQSRGGSLGGGGRGGGGMYA
LELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVA
IDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELL
EKCVVEPMALVMKKRARMERERHAAMIGDF*
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Synonyms
Publications