NO03G04920, NO03G04920 (gene) Nannochloropsis oceanica

Overview
NameNO03G04920
Unique NameNO03G04920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr3:1402328..1403569 +

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Properties
Property NameValue
DescriptionGtp-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1402328..1403569 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR030386G_GB1_RHD3_dom
IPR008803RHD3/Sey1
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_005854576.1 (gtp-binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU21784.1 gtp-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.8 bits (403), Expect = 1.800e-35
Identity = 89/147 (60.54%), Postives = 105/147 (71.43%), Query Frame = 0
Query:  161 EEEELYTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGRRTTRGVWVDLGSEKGS----SCNSASSSSSPTATLSSA--CQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGE 302
            +E   Y  LQY VVAIVGPQASGKSTLLNAL+GTRFPVL V + G GRRTT+GVWVD+G   G+    S N   +       +  A   + + P+VV+DTEGLESV+RG GS LFDRQLS LAVT ADVI+LN WARD+RGGR G +
Sbjct:    2 KENGRYRNLQYTVVAIVGPQASGKSTLLNALYGTRFPVLEVGNVGVGRRTTQGVWVDMGVSDGARGMDSRNRTGAEEEEEGGVGRARVGRGRIPVVVMDTEGLESVSRGPGSHLFDRQLSTLAVTTADVILLNAWARDMRGGRWGSD 148          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_005537286.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81250.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 93.6 bits (231), Expect = 1.600e-15
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 0
Query:  159 FAEEEELY-TALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            F  E  L+   LQY  VA++G Q+SGKSTLLN LFGT FP +   DA  GR + TRG+W+ + +  G                         ++VLD EG +S  RGEG+  F+R+ +  A+  A V+I+NVWA+DI  GR     + +LL+T+ E
Sbjct:   30 FLHEHRLHERGLQYHTVAVLGCQSSGKSTLLNCLFGTNFPTM---DASIGRYQVTRGIWLGVDARSGE------------------------ILVLDLEGTDSRERGEGAASFERKAALFALALAQVLIINVWAQDI--GRYNA-ANLALLRTVFE 155          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_005650010.1 (root hair defective 3 GTP-binding protein [Coccomyxa subellipsoidea C-169] >EIE25466.1 root hair defective 3 GTP-binding protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 92.8 bits (229), Expect = 2.600e-15
Identity = 63/161 (39.13%), Postives = 88/161 (54.66%), Query Frame = 0
Query:  154 QGIQSFAEEEELY-TALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGRR-TTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            QG+  F E   +    + Y VVAI GPQ+SGKSTL+NALFGT F  +   DA +GRR TT+G+W+     KG      S+                  +VLD EG +   RGE  + F+RQ S  A+  ADV+++N+WA+D+  GR  G     LL+T+ +
Sbjct:   19 QGVNDFVERHNIRDVGVGYQVVAITGPQSSGKSTLMNALFGTTFEEM---DAMSGRRQTTKGIWL----AKGQKIEEPST------------------LVLDLEGSDGRERGEDDNSFERQSSLFALAVADVLLVNMWAKDV--GREAG-AGKPLLKTIFQ 151          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: PNH08156.1 (Protein ROOT HAIR DEFECTIVE 3 [Tetrabaena socialis])

HSP 1 Score: 92.4 bits (228), Expect = 3.500e-15
Identity = 60/161 (37.27%), Postives = 91/161 (56.52%), Query Frame = 0
Query:  154 QGIQSFAEEEELYTA-LQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            Q +Q+F ++ EL +    Y VVAI+GPQ+SGKSTLLN +FGT F ++   DA AGR +TT+G+W+               S SP  T       +  ++V+D EG +   RGE    F+RQ +  A+  ADV+++N+W  DI   +  G+    LL+T+ +
Sbjct:   17 QSLQTFVDDNELASCKTNYQVVAIMGPQSSGKSTLLNHVFGTSFRMM---DAMAGRGQTTKGIWL---------------SKSPKVT-------ETAVLVMDLEGSDGRERGEDDTNFERQSALFALAVADVLLVNIWCHDIGREQGAGK---PLLRTIFQ 149          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_001690372.1 (predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 90.1 bits (222), Expect = 1.700e-14
Identity = 61/164 (37.20%), Postives = 90/164 (54.88%), Query Frame = 0
Query:  151 WRTQGIQSFAEEEEL-YTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            + + G+QSF ++ EL      Y VVAI+GPQ+SGKSTLLN +FGT F ++   DA  GR +TT+G+W+               S SP         +   ++V+D EG +   RGE    F+RQ +  A+  ADV+++N+W  DI  GR  G     LL+T+ +
Sbjct:   14 FESAGVQSFVDKNELAQCRTNYAVVAIMGPQSSGKSTLLNYVFGTDFKMM---DAMEGRGQTTKGIWM---------------SKSPKV-------ADTTVLVMDLEGSDGRERGEDDTNFERQSALFALAVADVLLVNIWCHDI--GREHGS-GKPLLKTIFQ 149          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_002946414.1 (hypothetical protein VOLCADRAFT_79128 [Volvox carteri f. nagariensis] >EFJ52341.1 hypothetical protein VOLCADRAFT_79128 [Volvox carteri f. nagariensis])

HSP 1 Score: 90.1 bits (222), Expect = 1.700e-14
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 0
Query:  156 IQSFAEEEELYTA-LQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            +Q F E  +L      Y VVAI+GPQ+SGKSTLLN +FGT F ++   DA AGR +TT+G+W+               S SP  T       +  ++V+D EG +   RGE    F+RQ +  A++ ADV+++N+W  DI  GR  G     LL+T+ +
Sbjct:   19 VQQFVEANDLAACKTNYQVVAIMGPQSSGKSTLLNYVFGTNFTMM---DAMAGRGQTTKGIWM---------------SKSPKVT-------ETTVLVMDLEGSDGRERGEDDTNFERQSALFALSVADVLLVNIWCHDI--GREHGS-GKPLLKTIFQ 149          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_011399355.1 (Protein ROOT HAIR DEFECTIVE 3, partial [Auxenochlorella protothecoides] >KFM26423.1 Protein ROOT HAIR DEFECTIVE 3, partial [Auxenochlorella protothecoides])

HSP 1 Score: 90.1 bits (222), Expect = 1.700e-14
Identity = 61/148 (41.22%), Postives = 84/148 (56.76%), Query Frame = 0
Query:  167 TALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPL-VVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            T + Y VVAI+GPQ+SGKSTLLNALFGT F  +   DA +GR +TTRGVW                       L+ A +   PL +V+D EG +   RGE    F+RQ +  A+  ADV+++N+WA+D+  GR  G     LL+T+ +
Sbjct:   29 TGIDYTVVAIMGPQSSGKSTLLNALFGTSFTEM---DALSGRSQTTRGVW-----------------------LAPAPRISEPLTLVMDLEGSDGRERGEDDTSFERQSALFALAVADVVVVNMWAKDV--GRESG-AGKPLLKTIFQ 147          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: PNW77507.1 (hypothetical protein CHLRE_10g439600v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 90.1 bits (222), Expect = 1.700e-14
Identity = 61/164 (37.20%), Postives = 90/164 (54.88%), Query Frame = 0
Query:  151 WRTQGIQSFAEEEEL-YTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            + + G+QSF ++ EL      Y VVAI+GPQ+SGKSTLLN +FGT F ++   DA  GR +TT+G+W+               S SP         +   ++V+D EG +   RGE    F+RQ +  A+  ADV+++N+W  DI  GR  G     LL+T+ +
Sbjct:   14 FESAGVQSFVDKNELAQCRTNYAVVAIMGPQSSGKSTLLNYVFGTDFKMM---DAMEGRGQTTKGIWM---------------SKSPKV-------ADTTVLVMDLEGSDGRERGEDDTNFERQSALFALAVADVLLVNIWCHDI--GREHGS-GKPLLKTIFQ 149          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_641502.1 (hypothetical protein DDB_G0279823 [Dictyostelium discoideum AX4] >Q54W90.1 RecName: Full=Protein SEY1 homolog >EAL67525.1 hypothetical protein DDB_G0279823 [Dictyostelium discoideum AX4])

HSP 1 Score: 89.7 bits (221), Expect = 2.200e-14
Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = 0
Query:  152 RTQGIQSFAEEEELYT-ALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGRR-TTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            RT  + + +  ++  T    Y V++I+GPQ+SGKSTLLN LF TRF V+   DA  GR+ TT+GVW+ +          AS++++   T           ++LD EG +   RGE    F+R+ S  ++  + V+I+N+WA DI  GR     + SLL+T+ E
Sbjct:  121 RTTFLSTLSNRDDFLTKGFDYSVISILGPQSSGKSTLLNLLFNTRFAVM---DASTGRKQTTQGVWMGV----------ASTTNNKNET----------FLILDVEGTDGRERGEDEKAFERKTSLFSLALSSVLIINMWAHDI--GRYNA-ANISLLKTVFE 257          
BLAST of NO03G04920 vs. NCBI_GenBank
Match: PSC68109.1 (ROOT HAIR DEFECTIVE 3 [Micractinium conductrix])

HSP 1 Score: 89.7 bits (221), Expect = 2.200e-14
Identity = 62/160 (38.75%), Postives = 89/160 (55.62%), Query Frame = 0
Query:  155 GIQSFAEEEELYTA-LQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313
            G++ F +   + +A L Y VVAI+GPQ+SGKSTLLN LFGT F  +   DA  GR +TTRG+W+               + +P  T         P +VLD EG +   RGE    F+RQ +  A+  ADV+++N+WA+D+  GR  G     LL+T+ +
Sbjct:   25 GVEQFVKSAGVESAGLGYTVVAIMGPQSSGKSTLLNHLFGTSFEEM---DALTGRSQTTRGIWL---------------ARAPKVTAP-------PTLVLDLEGSDGRERGEDDTSFERQSALFALAVADVVLVNMWAKDV--GRESG-AGKPLLKTIFQ 156          
The following BLAST results are available for this feature:
BLAST of NO03G04920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854576.11.800e-3560.54gtp-binding protein, partial [Nannochloropsis gadi... [more]
XP_005537286.11.600e-1539.10hypothetical protein, conserved [Cyanidioschyzon m... [more]
XP_005650010.12.600e-1539.13root hair defective 3 GTP-binding protein [Coccomy... [more]
PNH08156.13.500e-1537.27Protein ROOT HAIR DEFECTIVE 3 [Tetrabaena socialis... [more]
XP_001690372.11.700e-1437.20predicted protein [Chlamydomonas reinhardtii][more]
XP_002946414.11.700e-1438.36hypothetical protein VOLCADRAFT_79128 [Volvox cart... [more]
XP_011399355.11.700e-1441.22Protein ROOT HAIR DEFECTIVE 3, partial [Auxenochlo... [more]
PNW77507.11.700e-1437.20hypothetical protein CHLRE_10g439600v5 [Chlamydomo... [more]
XP_641502.12.200e-1436.20hypothetical protein DDB_G0279823 [Dictyostelium d... [more]
PSC68109.12.200e-1438.75ROOT HAIR DEFECTIVE 3 [Micractinium conductrix][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005391NSK005391Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04920.1NO03G04920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04920.1NO03G04920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04920 ID=NO03G04920|Name=NO03G04920|organism=Nannochloropsis oceanica|type=gene|length=1242bp
ATGACGAGGAAGCGGCTGACGCCACCAATACAGCTCAGCCATCCAAGGAG
ACCAAGGACGTTGCCTAGCCTCCCCACCAGTAGCTGTCTATCCCTCATCA
TCACTGCAACCTTACTCCTCGAGCTGGTCGTTACCCTCCTGCGACCCACA
ACCACCGTTGCTACCTTAAGCGCACCCTCCTCTAAGCTATGGGGCCCTCA
GAGCCGCCCATGGTCCTTGCACGCAGCGCGAGGGGGGGGGGTAGGGTCCA
GTAAGAGCAGCAGCAGTCCGCCTCCCGCCCATCCAACCCCTGCTCGACAA
AGGAAAGAGGAGGAAAATGAGGCACATTTTTTTTTTACCATCGGAGAACG
CTTTCAGTCAATGGTGACGCACGAATGCCACCTCGAAGAGGCGGACGTGG
AGGATCAGCAGGAGGAGGAGGGGGAGGAGGAGGAAAAGAAGCAAGCAACC
TGGCGGACACAAGGCATACAGAGTTTTGCAGAGGAGGAGGAGTTGTACAC
CGCATTGCAATATGGCGTGGTGGCCATTGTTGGCCCACAAGCAAGTGGGA
AATCCACCTTATTGAATGCTTTGTTTGGAACAAGGTTTCCGGTGCTTAAT
GTGAGGGATGCAGGGGCGGGAAGGAGGACGACGAGGGGCGTTTGGGTTGA
CCTTGGCAGCGAGAAAGGGAGTAGCTGCAACAGTGCCAGCAGTAGTAGCA
GTCCAACAGCAACCTTATCGTCTGCTTGCCAAAGTCAAAGACCGCTGGTG
GTCCTGGACACGGAAGGGTTGGAAAGCGTGGCACGTGGGGAGGGGAGCGA
CCTCTTCGATCGGCAGCTCTCCGCGCTAGCAGTAACGGCCGCCGACGTTA
TCATTTTAAATGTATGGGCGAGGGATATTAGAGGGGGCCGGATGGGAGGG
GAGCTGCATGCATCGTTGCTGCAGACATTGATCGAGCGGACGACGACGGT
GACGACGAGGAGCTCGAGTGGAAGGGCGAGTGAAGGAGGAAAGAAAAAGA
AAGAAGAGAAAGAGAATCAGGGAAAGACAGTAGCAACAACAACCACGACG
AAGACCACTGTCTCTAGACTGACTAAGAGGAGGAAGGCGTTGGTGGTGGT
CTTGAGGGACTCAGAGCAGCTGGATGGAGACGCGGCGGGGGCCCTGGGCA
TCGTCACGCGCTGCCTTGAAGAGGCTTACGCTGCTCTGGGACCCCCCCCC
CTTCCTCCTCCTCTTCCTTCTCCTCCTTTTCCGCCTCTTTAG
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protein sequence of NO03G04920.1

>NO03G04920.1-protein ID=NO03G04920.1-protein|Name=NO03G04920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MTRKRLTPPIQLSHPRRPRTLPSLPTSSCLSLIITATLLLELVVTLLRPT
TTVATLSAPSSKLWGPQSRPWSLHAARGGGVGSSKSSSSPPPAHPTPARQ
RKEEENEAHFFFTIGERFQSMVTHECHLEEADVEDQQEEEGEEEEKKQAT
WRTQGIQSFAEEEELYTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLN
VRDAGAGRRTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLV
VLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGG
ELHASLLQTLIERTTTVTTRSSSGRASEGGKKKKEEKENQGKTVATTTTT
KTTVSRLTKRRKALVVVLRDSEQLDGDAAGALGIVTRCLEEAYAALGPPP
LPPPLPSPPFPPL*
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Synonyms
Publications