NO03G04920.1, NO03G04920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04920.1
Unique NameNO03G04920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr3:1402328..1403569 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1402328..1403569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04920.1 vs.
Match: XP_005854576.1 (gtp-binding protein, partial [Nannochloropsis gaditana CCMP526]; EKU21784.1 gtp-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.1 bits (401), Expect = 3.000e-35
Identity = 89/147 (60.54%), Postives = 105/147 (71.43%), Query Frame = 0 
Query:  161 EEEELYTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGRRTTRGVWVDLGSEKGS----SCNSASSSSSPTATLSSA--CQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGE 302
            +E   Y  LQY VVAIVGPQASGKSTLLNAL+GTRFPVL V + G GRRTT+GVWVD+G   G+    S N   +       +  A   + + P+VV+DTEGLESV+RG GS LFDRQLS LAVT ADVI+LN WARD+RGGR G +
Sbjct:    2 KENGRYRNLQYTVVAIVGPQASGKSTLLNALYGTRFPVLEVGNVGVGRRTTQGVWVDMGVSDGARGMDSRNRTGAEEEEEGGVGRARVGRGRIPVVVMDTEGLESVSRGPGSHLFDRQLSTLAVTTADVILLNAWARDMRGGRWGSD 148
The following BLAST results are available for this feature:
BLAST of NO03G04920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854576.13.000e-3560.54gtp-binding protein, partial [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04920NO03G04920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04920.1NO03G04920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04920.1.cds1NO03G04920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04920.1 ID=NO03G04920.1|Name=NO03G04920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ATGACGAGGAAGCGGCTGACGCCACCAATACAGCTCAGCCATCCAAGGAG
ACCAAGGACGTTGCCTAGCCTCCCCACCAGTAGCTGTCTATCCCTCATCA
TCACTGCAACCTTACTCCTCGAGCTGGTCGTTACCCTCCTGCGACCCACA
ACCACCGTTGCTACCTTAAGCGCACCCTCCTCTAAGCTATGGGGCCCTCA
GAGCCGCCCATGGTCCTTGCACGCAGCGCGAGGGGGGGGGGTAGGGTCCA
GTAAGAGCAGCAGCAGTCCGCCTCCCGCCCATCCAACCCCTGCTCGACAA
AGGAAAGAGGAGGAAAATGAGGCACATTTTTTTTTTACCATCGGAGAACG
CTTTCAGTCAATGGTGACGCACGAATGCCACCTCGAAGAGGCGGACGTGG
AGGATCAGCAGGAGGAGGAGGGGGAGGAGGAGGAAAAGAAGCAAGCAACC
TGGCGGACACAAGGCATACAGAGTTTTGCAGAGGAGGAGGAGTTGTACAC
CGCATTGCAATATGGCGTGGTGGCCATTGTTGGCCCACAAGCAAGTGGGA
AATCCACCTTATTGAATGCTTTGTTTGGAACAAGGTTTCCGGTGCTTAAT
GTGAGGGATGCAGGGGCGGGAAGGAGGACGACGAGGGGCGTTTGGGTTGA
CCTTGGCAGCGAGAAAGGGAGTAGCTGCAACAGTGCCAGCAGTAGTAGCA
GTCCAACAGCAACCTTATCGTCTGCTTGCCAAAGTCAAAGACCGCTGGTG
GTCCTGGACACGGAAGGGTTGGAAAGCGTGGCACGTGGGGAGGGGAGCGA
CCTCTTCGATCGGCAGCTCTCCGCGCTAGCAGTAACGGCCGCCGACGTTA
TCATTTTAAATGTATGGGCGAGGGATATTAGAGGGGGCCGGATGGGAGGG
GAGCTGCATGCATCGTTGCTGCAGACATTGATCGAGCGGACGACGACGGT
GACGACGAGGAGCTCGAGTGGAAGGGCGAGTGAAGGAGGAAAGAAAAAGA
AAGAAGAGAAAGAGAATCAGGGAAAGACAGTAGCAACAACAACCACGACG
AAGACCACTGTCTCTAGACTGACTAAGAGGAGGAAGGCGTTGGTGGTGGT
CTTGAGGGACTCAGAGCAGCTGGATGGAGACGCGGCGGGGGCCCTGGGCA
TCGTCACGCGCTGCCTTGAAGAGGCTTACGCTGCTCTGGGACCCCCCCCC
CTTCCTCCTCCTCTTCCTTCTCCTCCTTTTCCGCCTCTTTAG
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protein sequence of NO03G04920.1

>NO03G04920.1-protein ID=NO03G04920.1-protein|Name=NO03G04920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MTRKRLTPPIQLSHPRRPRTLPSLPTSSCLSLIITATLLLELVVTLLRPT
TTVATLSAPSSKLWGPQSRPWSLHAARGGGVGSSKSSSSPPPAHPTPARQ
RKEEENEAHFFFTIGERFQSMVTHECHLEEADVEDQQEEEGEEEEKKQAT
WRTQGIQSFAEEEELYTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLN
VRDAGAGRRTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLV
VLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGG
ELHASLLQTLIERTTTVTTRSSSGRASEGGKKKKEEKENQGKTVATTTTT
KTTVSRLTKRRKALVVVLRDSEQLDGDAAGALGIVTRCLEEAYAALGPPP
LPPPLPSPPFPPL*
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mRNA from alignment at chr3:1402328..1403569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04920.1 ID=NO03G04920.1|Name=NO03G04920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at chr3:1402328..1403569+ (Nannochloropsis oceanica)
ATGACGAGGAAGCGGCTGACGCCACCAATACAGCTCAGCCATCCAAGGAG
ACCAAGGACGTTGCCTAGCCTCCCCACCAGTAGCTGTCTATCCCTCATCA
TCACTGCAACCTTACTCCTCGAGCTGGTCGTTACCCTCCTGCGACCCACA
ACCACCGTTGCTACCTTAAGCGCACCCTCCTCTAAGCTATGGGGCCCTCA
GAGCCGCCCATGGTCCTTGCACGCAGCGCGAGGGGGGGGGGTAGGGTCCA
GTAAGAGCAGCAGCAGTCCGCCTCCCGCCCATCCAACCCCTGCTCGACAA
AGGAAAGAGGAGGAAAATGAGGCACATTTTTTTTTTACCATCGGAGAACG
CTTTCAGTCAATGGTGACGCACGAATGCCACCTCGAAGAGGCGGACGTGG
AGGATCAGCAGGAGGAGGAGGGGGAGGAGGAGGAAAAGAAGCAAGCAACC
TGGCGGACACAAGGCATACAGAGTTTTGCAGAGGAGGAGGAGTTGTACAC
CGCATTGCAATATGGCGTGGTGGCCATTGTTGGCCCACAAGCAAGTGGGA
AATCCACCTTATTGAATGCTTTGTTTGGAACAAGGTTTCCGGTGCTTAAT
GTGAGGGATGCAGGGGCGGGAAGGAGGACGACGAGGGGCGTTTGGGTTGA
CCTTGGCAGCGAGAAAGGGAGTAGCTGCAACAGTGCCAGCAGTAGTAGCA
GTCCAACAGCAACCTTATCGTCTGCTTGCCAAAGTCAAAGACCGCTGGTG
GTCCTGGACACGGAAGGGTTGGAAAGCGTGGCACGTGGGGAGGGGAGCGA
CCTCTTCGATCGGCAGCTCTCCGCGCTAGCAGTAACGGCCGCCGACGTTA
TCATTTTAAATGTATGGGCGAGGGATATTAGAGGGGGCCGGATGGGAGGG
GAGCTGCATGCATCGTTGCTGCAGACATTGATCGAGCGGACGACGACGGT
GACGACGAGGAGCTCGAGTGGAAGGGCGAGTGAAGGAGGAAAGAAAAAGA
AAGAAGAGAAAGAGAATCAGGGAAAGACAGTAGCAACAACAACCACGACG
AAGACCACTGTCTCTAGACTGACTAAGAGGAGGAAGGCGTTGGTGGTGGT
CTTGAGGGACTCAGAGCAGCTGGATGGAGACGCGGCGGGGGCCCTGGGCA
TCGTCACGCGCTGCCTTGAAGAGGCTTACGCTGCTCTGGGACCCCCCCCC
CTTCCTCCTCCTCTTCCTTCTCCTCCTTTTCCGCCTCTTTAG
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Coding sequence (CDS) from alignment at chr3:1402328..1403569+

>NO03G04920.1 ID=NO03G04920.1|Name=NO03G04920.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr3:1402328..1403569+ (Nannochloropsis oceanica)
ATGACGAGGAAGCGGCTGACGCCACCAATACAGCTCAGCCATCCAAGGAG
ACCAAGGACGTTGCCTAGCCTCCCCACCAGTAGCTGTCTATCCCTCATCA
TCACTGCAACCTTACTCCTCGAGCTGGTCGTTACCCTCCTGCGACCCACA
ACCACCGTTGCTACCTTAAGCGCACCCTCCTCTAAGCTATGGGGCCCTCA
GAGCCGCCCATGGTCCTTGCACGCAGCGCGAGGGGGGGGGGTAGGGTCCA
GTAAGAGCAGCAGCAGTCCGCCTCCCGCCCATCCAACCCCTGCTCGACAA
AGGAAAGAGGAGGAAAATGAGGCACATTTTTTTTTTACCATCGGAGAACG
CTTTCAGTCAATGGTGACGCACGAATGCCACCTCGAAGAGGCGGACGTGG
AGGATCAGCAGGAGGAGGAGGGGGAGGAGGAGGAAAAGAAGCAAGCAACC
TGGCGGACACAAGGCATACAGAGTTTTGCAGAGGAGGAGGAGTTGTACAC
CGCATTGCAATATGGCGTGGTGGCCATTGTTGGCCCACAAGCAAGTGGGA
AATCCACCTTATTGAATGCTTTGTTTGGAACAAGGTTTCCGGTGCTTAAT
GTGAGGGATGCAGGGGCGGGAAGGAGGACGACGAGGGGCGTTTGGGTTGA
CCTTGGCAGCGAGAAAGGGAGTAGCTGCAACAGTGCCAGCAGTAGTAGCA
GTCCAACAGCAACCTTATCGTCTGCTTGCCAAAGTCAAAGACCGCTGGTG
GTCCTGGACACGGAAGGGTTGGAAAGCGTGGCACGTGGGGAGGGGAGCGA
CCTCTTCGATCGGCAGCTCTCCGCGCTAGCAGTAACGGCCGCCGACGTTA
TCATTTTAAATGTATGGGCGAGGGATATTAGAGGGGGCCGGATGGGAGGG
GAGCTGCATGCATCGTTGCTGCAGACATTGATCGAGCGGACGACGACGGT
GACGACGAGGAGCTCGAGTGGAAGGGCGAGTGAAGGAGGAAAGAAAAAGA
AAGAAGAGAAAGAGAATCAGGGAAAGACAGTAGCAACAACAACCACGACG
AAGACCACTGTCTCTAGACTGACTAAGAGGAGGAAGGCGTTGGTGGTGGT
CTTGAGGGACTCAGAGCAGCTGGATGGAGACGCGGCGGGGGCCCTGGGCA
TCGTCACGCGCTGCCTTGAAGAGGCTTACGCTGCTCTGGGACCCCCCCCC
CTTCCTCCTCCTCTTCCTTCTCCTCCTTTTCCGCCTCTTTAG
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Synonyms
Publications