NO03G04900, NO03G04900 (gene) Nannochloropsis oceanica

Overview
NameNO03G04900
Unique NameNO03G04900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr3:1398008..1399539 -

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Properties
Property NameValue
DescriptionProtein BROTHER of FT and TFL 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1398008..1399539 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036610PEBP-like_sf
IPR035810PEBP_euk
IPR008914PtdEtn-bd_prot_PEBP
Homology
BLAST of NO03G04900 vs. NCBI_GenBank
Match: EWM29920.1 (tf1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 261.9 bits (668), Expect = 1.700e-66
Identity = 131/207 (63.29%), Postives = 155/207 (74.88%), Query Frame = 0
Query:    6 QGAPRYLISLALFFSSSLPFQLTQHFVLAHAQMASTLKQSAAPSSLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQN 213
            + +P +L++ A F S +   Q    F      +A   K  AA  +L+DAGVIPDV+D F P +QIR+ YD+ L+TPGAT+LP Q VHMP VTLEGS PG LYTL MSDPDAPSPEHP+HRE+LHWIV++IPGGA DIAEGT+V  Y PPTPP+GTHRYV TVMEQPG     +RPP QRGGFRTR F KE GM+VVGATFF AAHQ+
Sbjct:    3 RSSPPFLLTFA-FLSVASILQPPHRF----GAVAQMTKHHAA--NLRDAGVIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDVVGATFFKAAHQS 202          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_016560013.1 (PREDICTED: protein MOTHER of FT and TFL1-like [Capsicum annuum] >PHT56103.1 hypothetical protein CQW23_04589 [Capsicum baccatum] >PHT90679.1 hypothetical protein T459_05792 [Capsicum annuum])

HSP 1 Score: 149.4 bits (376), Expect = 1.200e-32
Identity = 75/177 (42.37%), Postives = 102/177 (57.63%), Query Frame = 0
Query:   38 MASTLKQSAAPSSLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQNN 214
            MAS      +   L    VI DV+D F P ++  V YD+  ++ G  + P  A H PT+ ++GS     LYTLVM+DPDAPSP  PT REWLHWIVTD+P G  D +EG +V  YM P PP G HRYVFT+  Q   +    +PP  R  F+TR F  + G+ +  A  ++ + + +
Sbjct:    1 MASMETPPRSVEPLVAGKVIGDVIDLFVPAVEFTVEYDSKQISNGVEITPAAAAHKPTLHIKGSPDSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDVPEGG-DASEGREVVEYMGPKPPAGIHRYVFTLFRQTESQQVPHKPPEVRSNFKTRQFATDNGLGLPVAALYFNSQKEH 176          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: PHU26429.1 (hypothetical protein BC332_04761 [Capsicum chinense])

HSP 1 Score: 149.1 bits (375), Expect = 1.600e-32
Identity = 75/177 (42.37%), Postives = 102/177 (57.63%), Query Frame = 0
Query:   38 MASTLKQSAAPSSLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQNN 214
            MAS      +   L    VI DV+D F P ++  V YD+  ++ G  + P  A H PT+ ++GS     LYTLVM+DPDAPSP  PT REWLHWIVTD+P G  D +EG +V  YM P PP G HRYVFT+  Q   +    +PP  R  F+TR F  + G+ +  A  ++ + + +
Sbjct:    1 MASMETPPRSVEPLVAGKVIGDVIDLFVPAVEFTVEYDSKQISNGVEITPAAAAHKPTLHIKGSPDSNNLYTLVMADPDAPSPTEPTFREWLHWIVTDVPEGG-DASEGREVVEYMGPKPPAGIHRYVFTLFRQTESQQVPHKPPEVRSNFKTRQFATDNGLGLPVAALYFNSQKEH 176          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_011652965.1 (PREDICTED: protein MOTHER of FT and TF 1 [Cucumis sativus] >KGN64620.1 hypothetical protein Csa_1G071830 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.800e-31
Identity = 77/163 (47.24%), Postives = 94/163 (57.67%), Query Frame = 0
Query:   50 SLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV-VGATFFYAAHQ 212
            SL    VI DVLD F+P   + V+Y +  V  G  + P  A   PTV ++     +LYTLVM DPDAPSP  PT REWLHWIV DIP GA D  +G +V  YM P PP G HRYVF V +Q       LRPP  R  F+TR F  + G+ + V A +F +  Q
Sbjct:    7 SLVVGRVIGDVLDMFTPAADVSVSYGSKHVANGGEIKPFVAADRPTVLIQAPVSNQLYTLVMVDPDAPSPSEPTFREWLHWIVVDIPEGA-DANKGKEVVHYMGPQPPTGIHRYVFAVFKQNTPLGGRLRPPTTRSNFKTRQFASQNGLGLPVAAVYFNSQKQ 168          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_009757896.1 (PREDICTED: protein MOTHER of FT and TF 1-like [Nicotiana sylvestris] >XP_016507970.1 PREDICTED: protein MOTHER of FT and TFL1-like [Nicotiana tabacum])

HSP 1 Score: 145.2 bits (365), Expect = 2.300e-31
Identity = 73/160 (45.62%), Postives = 96/160 (60.00%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV-VGATFFYAAHQNN 214
            VI DV+D F P ++  V Y +  ++ G  + P  A H P + ++GS     LYTLVM+DPDAPSP  PT REWLHWIVTDIP G  D +EG ++  YM P PP G HRYVFT+  Q   E    +PP  R  F TR F  + G+ + V A +F +  ++N
Sbjct:   16 VIGDVVDMFVPVVEFSVEYGSKQISNGVEIKPAAAAHKPRLHIQGSPDSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIPEGG-DASEGRELTEYMGPQPPTGIHRYVFTLFRQTEAEQVPHKPPAGRANFNTRKFASDNGLGLPVAALYFNSQKEHN 174          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_010268882.1 (PREDICTED: protein MOTHER of FT and TFL1-like [Nelumbo nucifera])

HSP 1 Score: 144.4 bits (363), Expect = 4.000e-31
Identity = 76/155 (49.03%), Postives = 94/155 (60.65%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV-VGATFFYA 209
            VI DVLD FSP ++  V Y +  V  G  + P  A + P V L GS     LYTLVM+DPDAPSP  PT REWLHWIV DI  G+ D  +G ++ +YM P PP G HRYVFT+ +Q G  +   RPP  RG F TR F  + G+ + V A +F A
Sbjct:   13 VIGDVLDMFSPTLEFTVHYGSKQVANGCEIKPSAAANKPKVQLSGSRLSNNLYTLVMTDPDAPSPSEPTMREWLHWIVVDIAEGS-DATKGKELVSYMGPRPPTGIHRYVFTLFQQKGPITEETRPPDARGSFNTRNFAAQNGLGLPVAAVYFNA 166          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_006341565.1 (PREDICTED: protein MOTHER of FT and TF 1 [Solanum tuberosum])

HSP 1 Score: 141.7 bits (356), Expect = 2.600e-30
Identity = 69/156 (44.23%), Postives = 93/156 (59.62%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQ 212
            VI DV+D F P + + V Y N  VT G  + P  A+  P +T+ G +P   YTLVM+DPDAPSP  PT REW+HWIVTDIP G  ++A G +V  Y+ P PP G HRY+  +  Q      +L+PP+ R  F TR F  +  +    AT ++ AH+
Sbjct:   13 VIGDVVDMFVPSVTMSVHYANKHVTNGCDIKPSIAIEPPKITI-GGHPDEFYTLVMTDPDAPSPSEPTMREWVHWIVTDIP-GCSNVARGKEVLGYVGPRPPVGIHRYILVLFRQNAPMQGILQPPVARAHFCTRVFAHQLDLGTPVATVYFNAHK 166          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_016604703.1 (hypothetical protein SPPG_07875 [Spizellomyces punctatus DAOM BR117] >KNC96663.1 hypothetical protein SPPG_07875 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 141.7 bits (356), Expect = 2.600e-30
Identity = 73/164 (44.51%), Postives = 100/164 (60.98%), Query Frame = 0
Query:   50 SLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGT--HRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQ 212
            +L D+ VIPDV+  F+P I + ++Y N  V+ G  + P +A H P V+     P  LYTLV++DPDAPS EHP  R W HW+VTDI  G  D+ +G  V +Y PPTPPKGT  HRYVF +  Q  +  R L+ P  RGG+  + F  +  ++  GA FF + H+
Sbjct:    8 ALVDSQVIPDVISDFTPTIALDISYKNRKVSLGNEISPSEAEHEPKVSFSPPNPDDLYTLVLADPDAPSREHPAKRCWRHWVVTDITHG--DVKKGKVVTSYHPPTPPKGTHLHRYVFILFAQ-SKSLRHLKLPEDRGGWHVQEFADQYDLKPEGANFFVSQHE 168          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: AAO31791.1 (SP2G [Solanum lycopersicum])

HSP 1 Score: 141.4 bits (355), Expect = 3.400e-30
Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAY-DNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQNN 214
            VI DVLD F P +   V Y    +   G  + P +A   P V ++GS +   LYTLVM+DPDAPSP  PT REWLHWIVTDIP G  D ++G ++  YM P PP G HRYVFT+  Q   E    +PP  R  F+TR F  + G+++  A  ++ + + +
Sbjct:   16 VIGDVLDMFVPVVDFTVEYASKQISNNGVEIKPAEAAQKPRVHIKGSLHSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIPEGG-DASQGREMVEYMGPKPPAGIHRYVFTLFRQKEAEQVPHKPPQGRSNFKTRQFASDNGLDLPVAALYFNSQKEH 174          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: NP_001316375.1 (protein SELF PRUNING 2G [Solanum lycopersicum])

HSP 1 Score: 141.4 bits (355), Expect = 3.400e-30
Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAY-DNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQNN 214
            VI DVLD F P +   V Y    +   G  + P +A   P V ++GS +   LYTLVM+DPDAPSP  PT REWLHWIVTDIP G  D ++G ++  YM P PP G HRYVFT+  Q   E    +PP  R  F+TR F  + G+++  A  ++ + + +
Sbjct:   19 VIGDVLDMFVPVVDFTVEYASKQISNNGVEIKPAEAAQKPRVHIKGSLHSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIPEGG-DASQGREMVEYMGPKPPAGIHRYVFTLFRQKEAEQVPHKPPQGRSNFKTRQFASDNGLDLPVAALYFNSQKEH 177          
The following BLAST results are available for this feature:
BLAST of NO03G04900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29920.11.700e-6663.29tf1-like protein [Nannochloropsis gaditana][more]
XP_016560013.11.200e-3242.37PREDICTED: protein MOTHER of FT and TFL1-like [Cap... [more]
PHU26429.11.600e-3242.37hypothetical protein BC332_04761 [Capsicum chinens... [more]
XP_011652965.11.800e-3147.24PREDICTED: protein MOTHER of FT and TF 1 [Cucumis ... [more]
XP_009757896.12.300e-3145.63PREDICTED: protein MOTHER of FT and TF 1-like [Nic... [more]
XP_010268882.14.000e-3149.03PREDICTED: protein MOTHER of FT and TFL1-like [Nel... [more]
XP_006341565.12.600e-3044.23PREDICTED: protein MOTHER of FT and TF 1 [Solanum ... [more]
XP_016604703.12.600e-3044.51hypothetical protein SPPG_07875 [Spizellomyces pun... [more]
AAO31791.13.400e-3043.75SP2G [Solanum lycopersicum][more]
NP_001316375.13.400e-3043.75protein SELF PRUNING 2G [Solanum lycopersicum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005393NSK005393Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04900.1NO03G04900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535984gene_1698Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g2gene715Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04900.1NO03G04900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04900 ID=NO03G04900|Name=NO03G04900|organism=Nannochloropsis oceanica|type=gene|length=1532bp
CGGGGGGGTGTTGGCGAATAATCCAGGCTTCATCCAACCTCCTACCATTC
TCCTTTCTTCGATGGGGGACAATAGAAGAGCTGTAGCTCTCTTACGGATG
GTGATGGAATAGTGATCGTATTCTTTGGATAATCACAGATTCATAAGTAT
CCTATGTACGATAGTCTGGCCCAGTATAATAAGCGTCTAAACCCTTAAAG
GACTGATAAACAATGTAGTCCATGAAGCCCTACCACTATACCCCGTCTCT
TGTTCTGTTCTGTGCATCGTTCTTGTGCAGTGTGTGTGTGCTCTCTAAAT
TTTGGCTGACAGAATATTTGGGTGTATCGTAGTTAGGAAAGCTGCCGTGT
TTGTTGTCCCATCCTGCCCTACAATTAAAGCTCGCCTTTCTCATCATCTT
TTCCTCCTCCCCCACTCATCAGCCCCCCCTCTCGTCTCCACCGCCGCCCG
TGCCATCCTTTACATGGCCTCTCTTCGCCAGGGAGCTCCACGCTATTTGA
TATCGCTCGCACTTTTCTTCTCTTCGTCGTTACCCTTCCAGCTTACGCAG
CACTTCGTCCTCGCGCACGCTCAGATGGCCTCTACACTCAAGCAGTCCGC
GGCCCCCAGCTCTTTGCAAGACGCGGGGGTCATTCCGGACGTCTTGGACT
GCTTCTCCCCAGGTATACAGATCCGCGTTGCGTATGATAATCATTTAGTC
ACTCCAGGTGCGACCCTTCTTCCTGTTCAAGCCGTGCACATGCCCACGGT
AACGCTCGAAGGCTCCTACCCAGGTCGGCTCTACACTCTTGTCATGTCCG
ATCCTGATGCTCCCTCCCCCGAGCACCCTACCCACCGTGAATGGCTGCAT
TGGATCGTCACAGACATCCCAGGAGGTGCAAAAGACATAGCGGAAGGCAC
GCAAGTCGCGGCTTACATGCCTCCGACCCCTCCGAAGGGAACACATCGAT
ATGTGTTTACTGTTATGGAACAACCGGGGCGCGAATCACGGGTTTTGCGT
CCACCCATGCAACGGGGAGGGTTTCGGACCCGTGCCTTCTTGAAGGAGGG
GGGAATGGAGGTGGTAGGAGCGACGTTCTTCTATGCAGCGCATCAGAATA
ATTAAGACGGGGGAAGTAGAAGGGAGCGAAGGAGGGAGGTGGAAATAAAT
TAATGGACTAAGGTGACGGAGGGAGGGCCAGGGGTTAAGTTAAAGAAGCA
AATACAACGGTGCCCAAGACTGTTGTACCCTGAGGGGCCGTTAAGCGGCT
ATCACTTGTACATACAGCGACGGAGAGAGAGTGGGGAATTTACGGTCTAG
CAGGAATTGTTCAAGGTTTAAATATCCGTTTAGCATGGCCGTTATATTCA
TTGGCACAAAAGACAAACACGCTTGAGATTGAGAAGATGGTTCGCACGAT
AGAAGTCGGGGTTGGAGGTCGATGGAATTCCCTATGCGATGGCCGTCATC
AATAATAGGCCATGACAGCCAGGGAAGATTCGCAGCTTGGCAATGACCGA
CATTGAGTCAAACAAACCGAGGCAAAACAACC
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protein sequence of NO03G04900.1

>NO03G04900.1-protein ID=NO03G04900.1-protein|Name=NO03G04900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MASLRQGAPRYLISLALFFSSSLPFQLTQHFVLAHAQMASTLKQSAAPSS
LQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEG
SYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAA
YMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV
VGATFFYAAHQNN*
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Synonyms
Publications