NO03G04900.1, NO03G04900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04900.1
Unique NameNO03G04900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr3:1398008..1399539 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1398008..1399539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04900.1 vs.
Match: EWM29920.1 (tf1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 261.9 bits (668), Expect = 1.700e-66
Identity = 131/207 (63.29%), Postives = 155/207 (74.88%), Query Frame = 0 
Query:    6 QGAPRYLISLALFFSSSLPFQLTQHFVLAHAQMASTLKQSAAPSSLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQN 213
            + +P +L++ A F S +   Q    F      +A   K  AA  +L+DAGVIPDV+D F P +QIR+ YD+ L+TPGAT+LP Q VHMP VTLEGS PG LYTL MSDPDAPSPEHP+HRE+LHWIV++IPGGA DIAEGT+V  Y PPTPP+GTHRYV TVMEQPG     +RPP QRGGFRTR F KE GM+VVGATFF AAHQ+
Sbjct:    3 RSSPPFLLTFA-FLSVASILQPPHRF----GAVAQMTKHHAA--NLRDAGVIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHMPQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDVVGATFFKAAHQS 202
The following BLAST results are available for this feature:
BLAST of NO03G04900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29920.11.700e-6663.29tf1-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04900NO03G04900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04900.1NO03G04900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04900.1.cds1NO03G04900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04900.1 ID=NO03G04900.1|Name=NO03G04900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp
CGGGGGGGTGTTGGCGAATAATCCAGGCTTCATCCAACCTCCTACCATTC
TCCTTTCTTCGATGGGGGACAATAGAAGAGCTGTAGCTCTCTTACGGATG
GTGATGGAATAGTGATCGTATTCTTTGGATAATCACAGATTCATAAGTAT
CCTATGTACGATAGTCTGGCCCAGTATAATAAGCGTCTAAACCCTTAAAG
GACTGATAAACAATGTAGTCCATGAAGCCCTACCACTATACCCCGTCTCT
TGTTCTGTTCTGTGCATCGTTCTTGTGCAGTGTGTGTGTGCTCTCTAAAT
TTTGGCTGACAGAATATTTGGGTGTATCGTAGTTAGGAAAGCTGCCGTGT
TTGTTGTCCCATCCTGCCCTACAATTAAAGCTCGCCTTTCTCATCATCTT
TTCCTCCTCCCCCACTCATCAGCCCCCCCTCTCGTCTCCACCGCCGCCCG
TGCCATCCTTTACATGGCCTCTCTTCGCCAGGGAGCTCCACGCTATTTGA
TATCGCTCGCACTTTTCTTCTCTTCGTCGTTACCCTTCCAGCTTACGCAG
CACTTCGTCCTCGCGCACGCTCAGATGGCCTCTACACTCAAGCAGTCCGC
GGCCCCCAGCTCTTTGCAAGACGCGGGGGTCATTCCGGACGTCTTGGACT
GCTTCTCCCCAGGTATACAGATCCGCGTTGCGTATGATAATCATTTAGTC
ACTCCAGGTGCGACCCTTCTTCCTGTTCAAGCCGTGCACATGCCCACGGT
AACGCTCGAAGGCTCCTACCCAGGTCGGCTCTACACTCTTGTCATGTCCG
ATCCTGATGCTCCCTCCCCCGAGCACCCTACCCACCGTGAATGGCTGCAT
TGGATCGTCACAGACATCCCAGGAGGTGCAAAAGACATAGCGGAAGGCAC
GCAAGTCGCGGCTTACATGCCTCCGACCCCTCCGAAGGGAACACATCGAT
ATGTGTTTACTGTTATGGAACAACCGGGGCGCGAATCACGGGTTTTGCGT
CCACCCATGCAACGGGGAGGGTTTCGGACCCGTGCCTTCTTGAAGGAGGG
GGGAATGGAGGTGGTAGGAGCGACGTTCTTCTATGCAGCGCATCAGAATA
ATTAAGACGGGGGAAGTAGAAGGGAGCGAAGGAGGGAGGTGGAAATAAAT
TAATGGACTAAGGTGACGGAGGGAGGGCCAGGGGTTAAGTTAAAGAAGCA
AATACAACGGTGCCCAAGACTGTTGTACCCTGAGGGGCCGTTAAGCGGCT
ATCACTTGTACATACAGCGACGGAGAGAGAGTGGGGAATTTACGGTCTAG
CAGGAATTGTTCAAGGTTTAAATATCCGTTTAGCATGGCCGTTATATTCA
TTGGCACAAAAGACAAACACGCTTGAGATTGAGAAGATGGTTCGCACGAT
AGAAGTCGGGGTTGGAGGTCGATGGAATTCCCTATGCGATGGCCGTCATC
AATAATAGGCCATGACAGCCAGGGAAGATTCGCAGCTTGGCAATGACCGA
CATTGAGTCAAACAAACCGAGGCAAAACAACC
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protein sequence of NO03G04900.1

>NO03G04900.1-protein ID=NO03G04900.1-protein|Name=NO03G04900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MASLRQGAPRYLISLALFFSSSLPFQLTQHFVLAHAQMASTLKQSAAPSS
LQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEG
SYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAA
YMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV
VGATFFYAAHQNN*
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mRNA from alignment at chr3:1398008..1399539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04900.1 ID=NO03G04900.1|Name=NO03G04900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp|location=Sequence derived from alignment at chr3:1398008..1399539- (Nannochloropsis oceanica)
CGGGGGGGTGTTGGCGAATAATCCAGGCTTCATCCAACCTCCTACCATTC
TCCTTTCTTCGATGGGGGACAATAGAAGAGCTGTAGCTCTCTTACGGATG
GTGATGGAATAGTGATCGTATTCTTTGGATAATCACAGATTCATAAGTAT
CCTATGTACGATAGTCTGGCCCAGTATAATAAGCGTCTAAACCCTTAAAG
GACTGATAAACAATGTAGTCCATGAAGCCCTACCACTATACCCCGTCTCT
TGTTCTGTTCTGTGCATCGTTCTTGTGCAGTGTGTGTGTGCTCTCTAAAT
TTTGGCTGACAGAATATTTGGGTGTATCGTAGTTAGGAAAGCTGCCGTGT
TTGTTGTCCCATCCTGCCCTACAATTAAAGCTCGCCTTTCTCATCATCTT
TTCCTCCTCCCCCACTCATCAGCCCCCCCTCTCGTCTCCACCGCCGCCCG
TGCCATCCTTTACATGGCCTCTCTTCGCCAGGGAGCTCCACGCTATTTGA
TATCGCTCGCACTTTTCTTCTCTTCGTCGTTACCCTTCCAGCTTACGCAG
CACTTCGTCCTCGCGCACGCTCAGATGGCCTCTACACTCAAGCAGTCCGC
GGCCCCCAGCTCTTTGCAAGACGCGGGGGTCATTCCGGACGTCTTGGACT
GCTTCTCCCCAGGTATACAGATCCGCGTTGCGTATGATAATCATTTAGTC
ACTCCAGGTGCGACCCTTCTTCCTGTTCAAGCCGTGCACATGCCCACGGT
AACGCTCGAAGGCTCCTACCCAGGTCGGCTCTACACTCTTGTCATGTCCG
ATCCTGATGCTCCCTCCCCCGAGCACCCTACCCACCGTGAATGGCTGCAT
TGGATCGTCACAGACATCCCAGGAGGTGCAAAAGACATAGCGGAAGGCAC
GCAAGTCGCGGCTTACATGCCTCCGACCCCTCCGAAGGGAACACATCGAT
ATGTGTTTACTGTTATGGAACAACCGGGGCGCGAATCACGGGTTTTGCGT
CCACCCATGCAACGGGGAGGGTTTCGGACCCGTGCCTTCTTGAAGGAGGG
GGGAATGGAGGTGGTAGGAGCGACGTTCTTCTATGCAGCGCATCAGAATA
ATTAAGACGGGGGAAGTAGAAGGGAGCGAAGGAGGGAGGTGGAAATAAAT
TAATGGACTAAGGTGACGGAGGGAGGGCCAGGGGTTAAGTTAAAGAAGCA
AATACAACGGTGCCCAAGACTGTTGTACCCTGAGGGGCCGTTAAGCGGCT
ATCACTTGTACATACAGCGACGGAGAGAGAGTGGGGAATTTACGGTCTAG
CAGGAATTGTTCAAGGTTTAAATATCCGTTTAGCATGGCCGTTATATTCA
TTGGCACAAAAGACAAACACGCTTGAGATTGAGAAGATGGTTCGCACGAT
AGAAGTCGGGGTTGGAGGTCGATGGAATTCCCTATGCGATGGCCGTCATC
AATAATAGGCCATGACAGCCAGGGAAGATTCGCAGCTTGGCAATGACCGA
CATTGAGTCAAACAAACCGAGGCAAAACAACC
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Coding sequence (CDS) from alignment at chr3:1398008..1399539-

>NO03G04900.1 ID=NO03G04900.1|Name=NO03G04900.1|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr3:1398008..1399539- (Nannochloropsis oceanica)
ATGGCCTCTCTTCGCCAGGGAGCTCCACGCTATTTGATATCGCTCGCACT
TTTCTTCTCTTCGTCGTTACCCTTCCAGCTTACGCAGCACTTCGTCCTCG
CGCACGCTCAGATGGCCTCTACACTCAAGCAGTCCGCGGCCCCCAGCTCT
TTGCAAGACGCGGGGGTCATTCCGGACGTCTTGGACTGCTTCTCCCCAGG
TATACAGATCCGCGTTGCGTATGATAATCATTTAGTCACTCCAGGTGCGA
CCCTTCTTCCTGTTCAAGCCGTGCACATGCCCACGGTAACGCTCGAAGGC
TCCTACCCAGGTCGGCTCTACACTCTTGTCATGTCCGATCCTGATGCTCC
CTCCCCCGAGCACCCTACCCACCGTGAATGGCTGCATTGGATCGTCACAG
ACATCCCAGGAGGTGCAAAAGACATAGCGGAAGGCACGCAAGTCGCGGCT
TACATGCCTCCGACCCCTCCGAAGGGAACACATCGATATGTGTTTACTGT
TATGGAACAACCGGGGCGCGAATCACGGGTTTTGCGTCCACCCATGCAAC
GGGGAGGGTTTCGGACCCGTGCCTTCTTGAAGGAGGGGGGAATGGAGGTG
GTAGGAGCGACGTTCTTCTATGCAGCGCATCAGAATAATTAA
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Synonyms
Publications