NO03G04880, NO03G04880 (gene) Nannochloropsis oceanica

Overview
NameNO03G04880
Unique NameNO03G04880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1053
Alignment locationchr3:1393257..1394309 +

Link to JBrowse

Properties
Property NameValue
DescriptionKinesin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1393257..1394309 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
Vocabulary: Molecular Function
TermDefinition
GO:0008017microtubule binding
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0003774motor activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
Homology
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BLAST of NO03G04880 vs. NCBI_GenBank
Match: EWM29922.1 (kinesin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 315.1 bits (806), Expect = 2.800e-82
Identity = 187/349 (53.58%), Postives = 209/349 (59.89%), Query Frame = 0 
Query:    1 MRNLDLGEDEDEVEMEEETNEEDVVFTGHRTRRQHLSTMAMNVEERKAVASALFGVDLTVERANGKGAVPVRAPNGVYYMEKIPAPEGRPVSYLYPARGMGDQLMREQVRQWQALSPMWVVDVPDFPTTREGFLSMRTGLLGATISRLWFVWRRPFLFIYKSKPPADSKAYHAPVDVVNVTDCDVILAEKNEDELGFVIKGTTKKWHLQAANEDDLTSWLVALGQPVKNLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGYRGRASTLASTASVGSVSTRGSHXXXXXXXXXXVYAGHGAYGGDGAKKSRTRNNGLVLSPMGPQTFDASHSGTAQHLRGPGRGMPY 350
            +R+LDLGE+E     E+ T E   +  G     Q LSTMA+NVEERKAVASALFGVDL V+R  GKGA+P+RAPNGVYY+E IP  EGRPV+Y YPARGMGDQ MREQVR+W  LSPMWV DVPDFPT REGFLSMRTGLL A  +RLWFVWRRPFLFIYKSKP   +  Y APVDVVNVTDC V L+ K  DELGF ++G  K   LQAANEDDLT+WL+ALGQPVKNLP                              L Y G     AS+ASV SVST  SH                                            A   G AQHLRGPG G+ +
Sbjct: 1614 VRDLDLGEEEG---AEDVTGESFAI--GSHAPPQPLSTMALNVEERKAVASALFGVDLAVQR-RGKGALPMRAPNGVYYLESIPVSEGRPVTYTYPARGMGDQAMREQVRRWDTLSPMWVQDVPDFPTGREGFLSMRTGLLNANSARLWFVWRRPFLFIYKSKPAGKTHVYQAPVDVVNVTDCQVSLSPK--DELGFRVEGLRKTLMLQAANEDDLTAWLLALGQPVKNLPAGVSPVLHLLMNGHTGTVHGGLPL------LCYSGG----ASSASVASVSTHTSHFQA----------------------------------------QARKRGVAQHLRGPGHGVAH 1904
The following BLAST results are available for this feature:
BLAST of NO03G04880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29922.12.800e-8253.58kinesin-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04880.1NO03G04880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04880.1NO03G04880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04880 ID=NO03G04880|Name=NO03G04880|organism=Nannochloropsis oceanica|type=gene|length=1053bp
ATGCGTAACTTGGACCTGGGCGAGGACGAAGACGAAGTAGAGATGGAGGA
AGAAACAAACGAGGAGGACGTGGTCTTCACAGGCCACCGCACTCGGCGCC
AGCACTTGTCTACCATGGCGATGAATGTGGAGGAGCGCAAGGCAGTCGCC
TCCGCTTTGTTTGGAGTGGATCTGACCGTGGAACGCGCGAACGGGAAGGG
GGCTGTACCTGTCCGGGCCCCCAACGGCGTTTACTATATGGAGAAGATCC
CCGCCCCTGAGGGTCGACCAGTCTCTTATCTCTACCCTGCGCGAGGGATG
GGCGATCAGTTGATGCGGGAGCAGGTACGGCAGTGGCAGGCCTTGTCGCC
AATGTGGGTGGTGGATGTACCTGATTTCCCGACGACGAGGGAGGGGTTCT
TGAGCATGCGCACGGGCTTGTTGGGGGCAACCATTTCGCGGTTGTGGTTC
GTCTGGCGCCGGCCGTTTTTATTCATTTACAAGAGTAAGCCGCCTGCGGA
CTCCAAGGCATACCATGCCCCGGTAGACGTCGTGAATGTTACGGATTGCG
ATGTGATTTTGGCGGAGAAGAACGAGGACGAGCTCGGCTTTGTGATCAAG
GGAACGACCAAGAAGTGGCACCTCCAGGCGGCGAACGAGGACGACCTCAC
CTCCTGGCTCGTCGCTTTGGGGCAACCCGTCAAGAATCTGCCCCCTGGCG
GTTCACAGGAGCTGATGATGCTCATGAACTGCAGCAGTAGCAGCAGCAGC
AGCAGTGTCGTGAGTGGGATGATGCCCCCCCGTCTTGGATACCGTGGACG
AGCGTCCACGCTAGCCTCGACTGCAAGTGTGGGAAGCGTGAGCACGCGGG
GAAGTCACTTTCAGCAGCAGCAGCAGCAGCAAGGGGGAGTTTATGCCGGG
CATGGTGCTTACGGTGGCGATGGAGCAAAAAAGTCCCGCACACGAAATAA
CGGTCTGGTGTTGTCTCCGATGGGCCCCCAGACTTTCGACGCTTCCCATT
CGGGCACAGCGCAGCACCTCAGAGGGCCGGGCCGAGGGATGCCTTACCGT
TAA
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protein sequence of NO03G04880.1

>NO03G04880.1-protein ID=NO03G04880.1-protein|Name=NO03G04880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MRNLDLGEDEDEVEMEEETNEEDVVFTGHRTRRQHLSTMAMNVEERKAVA
SALFGVDLTVERANGKGAVPVRAPNGVYYMEKIPAPEGRPVSYLYPARGM
GDQLMREQVRQWQALSPMWVVDVPDFPTTREGFLSMRTGLLGATISRLWF
VWRRPFLFIYKSKPPADSKAYHAPVDVVNVTDCDVILAEKNEDELGFVIK
GTTKKWHLQAANEDDLTSWLVALGQPVKNLPPGGSQELMMLMNCSSSSSS
SSVVSGMMPPRLGYRGRASTLASTASVGSVSTRGSHFQQQQQQQGGVYAG
HGAYGGDGAKKSRTRNNGLVLSPMGPQTFDASHSGTAQHLRGPGRGMPYR
*
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Synonyms
Publications