NO03G04800, NO03G04800 (gene) Nannochloropsis oceanica

Overview
NameNO03G04800
Unique NameNO03G04800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4578
Alignment locationchr3:1363401..1367978 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1363401..1367978 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04800 vs. NCBI_GenBank
Match: EWM29894.1 (hypothetical protein Naga_100035g17 [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 3.300e-42
Identity = 169/257 (65.76%), Postives = 177/257 (68.87%), Query Frame = 0 
Query:  153 EDGKLFLGCKKEGCNGILLVGTTTRHGAPYQCPRCLNKQKYCQDCQQLYINFRRHRILGHELYEFQRKRQVLIRNNHGLFVPADQSKKVPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKEEGEMMIYAPAGAVWTGGREGGRGGVPPTPEVAEELDDASDILVKLMQGQSSSNKRSK 410
            EDG+L+LGCKKEGCNGILLV  TT HGAPYQCPRCLNKQKYCQDCQQLYINFRRHR LGHELYEFQRKRQVL+RN HGLFVP +QSKK               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                        XXXX        I++PAGAV +G R    G +P  PEVAEELDDASDILVKLMQG  SSNKRSK
Sbjct:  142 EDGRLYLGCKKEGCNGILLVEPTTHHGAPYQCPRCLNKQKYCQDCQQLYINFRRHRTLGHELYEFQRKRQVLVRNIHGLFVPGNQSKK------GNLVTAPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALSTVGLDRCRSRRGRHAWVQGCDEIGLEEMGEVEAGLGXXXXXXXXXXXXIHSPAGAV-SGTRRHDGGRLPAPPEVAEELDDASDILVKLMQG--SSNKRSK 389
[Close]
BLAST of NO03G04800 vs. NCBI_GenBank
Match: EWM29893.1 (hypothetical protein Naga_100035g17 [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 2.300e-32
Identity = 159/257 (61.87%), Postives = 166/257 (64.59%), Query Frame = 0 
Query:  153 EDGKLFLGCKKEGCNGILLVGTTTRHGAPYQCPRCLNKQKYCQDCQQLYINFRRHRILGHELYEFQRKRQVLIRNNHGLFVPADQSKKVPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKEEGEMMIYAPAGAVWTGGREGGRGGVPPTPEVAEELDDASDILVKLMQGQSSSNKRSK 410
            EDG+L+LGCKKEGCNGILLV  TT HGAPYQCPRCLNKQKYCQDCQQLYINFRRHR LGHELYEFQRKRQ    +  G  V A                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                        XXXX        I++PAGAV +G R    G +P  PEVAEELDDASDILVKLMQG  SSNKRSK
Sbjct:  142 EDGRLYLGCKKEGCNGILLVEPTTHHGAPYQCPRCLNKQKYCQDCQQLYINFRRHRTLGHELYEFQRKRQ----SKKGNLVTA-----------------PGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALSTVGLDRCRSRRGRHAWVQGCDEIGLEEMGEVEAGLGXXXXXXXXXXXXIHSPAGAV-SGTRRHDGGRLPAPPEVAEELDDASDILVKLMQG--SSNKRSK 374
The following BLAST results are available for this feature:
BLAST of NO03G04800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29894.13.300e-4265.76hypothetical protein Naga_100035g17 [Nannochlorops... [more]
EWM29893.12.300e-3261.87hypothetical protein Naga_100035g17 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04800.1NO03G04800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|14035gene_1687Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g17gene724Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04800.1NO03G04800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04800 ID=NO03G04800|Name=NO03G04800|organism=Nannochloropsis oceanica|type=gene|length=4578bp
ATGTCGCTCGACGCGGCCGAGTCCATGGAGACGCGAGGGGATCCCGCCCA
CCAGCGCCAACAAGAGCTCGAACAACAGCAGCAGCTCCACTACGGACATA
CGGACCACCCTCCCCCCCCCTTGCCTCCCCCGCCCCCTTTCCCTCGCTCC
GACCCGCATCATCACCACCTCCATCCTCACGGCCCTCCTCCGCCTTTTGG
CTATGCAGTCTCCCTGGGGGTCCATGCCCCTCCTCCCCCTCCACATAGTC
ATCCGTCCCACCTCTTCCCCCAGCACGTCATAATGCCTCCCGCCCCTCCC
GGAGGCCTGAAAAGCGAAATGGACGACGACAAGGATATAATGGTAAGCGC
CGGCAACGGCGGCGATGGGCACGGCAGTCACGCCCACACCCACCCTAGCT
CTAGTTCAAGCAGCATCAACACCACCATCACCAGCGATGGAGGGCCGCCC
AACCAAGAGGACGGAAAGCTTTTCTTGGGGTGTAAAAAGGAAGGGTGTAA
CGGCATTTTGCTGGTGGGAACGACGACGCGGCATGGGGCGCCGTACCAGT
GTCCCCGGTGCTTGAACAAGCAGAAGTACTGTCAGGATTGTCAGCAGCTT
TACATAAACTTTCGCCGTCATCGGATATTAGGCCATGAGTTGTATGAGTT
CCAGCGGAAGCGACAGgtgcgtggggacggggagggagggagggagggag
ggagggagggaaggagggtatgtggttggtttgttttgggaataggtgcg
ttcggaagcttgtcattttttgggggggttgattggagtgcgttccctct
gtgtacagtgctcgggttgggccgggggaaaaggcatctggggcaggtct
ttcccctcctccatggtcgaggttgaggagtaggaatcctggctcacgtc
ctttgtatgtgtgtcaccctgtcatccaccctcttctaatcacggtaggg
ttacagatttgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtct
gtctgtctgtcctgcatcctgttttttaatcacggttggtctggggtcga
atctgtcgacacgtttgtcgttttaaaacatgtcgtttgaaaaggcggtt
tggagaaaggagagtaatgattaacagtgcggtgacacggtcgtgggcag
agcagcaccagcagaagaatgtccttcgctgccctgactctggttcacga
ttgcatggattaaatgcagatgaagaggaggagagggaagagaaggaggg
gggggaggaggtggaggaaaaggagaagggcatcctcggaagagtaaccc
ccccctctccctcccccctcctcctcctcctccccctactgctcttctct
tctcctgcaatcagactgtgtcaacctgccttcaaagctgtctctctcct
ctccgtctttctcatctctcccactttctctctccttcctcctcctctcc
ctctccctctctccctctccctctctctccttttgtcgtctcgcttcggt
gtgctcgatgattcccctctgtgacatagGTCCTCATACGTAACAACCAC
GGTCTCTTCGTTCCTGCCGATCAGAGTAAAAAGGTACCCGTTACCATCAC
CGGCCCCGGCATTTTCAGCAGCGGCAGCAGCAGCAGCAGTAGCAGCAGCA
GCAGCAGCAGCAGCAGCATTTCCGTCAGCAGCACCAGCGCAGGTTCAACG
TCTTCCCTCCTGGGAGGGGGAGGACGCCAATCCCAGAAGCAGAAGCAGGC
GGCGGCGGCTGCTGCTGCGGCTGCTGGCGTTGAGATGGGGGGACGACGAG
TAAGAGGGGATGGGCGCTCCCGGCGTCCGACTAAGGGTCGAGGTAAGGGA
CATGATGAAATTAGCCTTGAGGAGGAGGAGGAAGAGGAAGGGAATGAGGA
AGGGGAGAGGATGAAAGAGGAAGGGGAGATGATGATTTATGCGCCGGCGG
GCGCGGTGTGGACTGGAGGAAGGGAAGGAGGTAGAGGGGGGGTTCCTCCT
ACCCCTGAGGTGGCTGAGGAGTTGGATGACGCGTCAGATATTTTGGTCAA
GCTGATGCAGGGACAAAGCAGTAGCAATAAGCGCAGCAAGACGGGCGAAC
TCACATCTCCAGGTGGAGGGATGAACAAGCCGCCGCTGCCAAAGCAGCAG
CAGCAGCAACAACAACGACAACAACAACCTGTGTGCCAGCAACAGAAGCA
GCAGCAGTTGCAGCAGATGGAGACAACAACAGGTGCAGCAGCAGCCGCAA
CAGCCGCAGCTGCCGCAGCAGCAGCGGGAGCAGGAGCTGCAGCAGGGGCT
ATTGCATCCATGTCATCCGCCGCCGGCCATGTCTCTTCTCCAGGCCAAGC
CCAGCCCATCGAGCCCATGTCCCCCGACGGCCCGAATTCCTCTGCACTGC
CCCCCTCCTCCTCTGTTTCCAATGCCTCCTCCTCCTCCTCCTCCTCCTCT
GCCGCTGCTTTCTCCCCCCCTCCTTCCTTGCAGCCACCCGCCGCGTGGTC
CTCGTCCAACTTCCTTGCTTCCTTCAAGCCTCCCACCCTACTCCCTGCAA
ACGCGAGTCAGATGCAGCGTCAGCAGCCACGCTGGGTGAGTGGCGATGCT
GCCTCCTTCCTTCCCCCCCCCTTCTCCTTTAGTTCCAAGACCATGCGCGA
AAACGACCCTGTGGCTCCACTAGAGATTCCTCCTTCCCTTCCTCCCTTGC
CTACCCTCGTGGGGAAGGATTTTGGGCCGCCCTCTACAGCAGCTGCAGCG
GCAGCAGGGACGGAGCGGGACGCAGGGACGCAGACGTCGCCTTCGGGCTC
TTCTCCTCCCCCCCCCCTCCTCCTCCTGAGCAGCAGCAGCAGCAGGAGGA
GTGGTCGTCATCGTCCTGTGCATCGGGCGCAGCAGCAAAAGCTACTCTGC
CAGCGGCGATGGGATCAGGAGGAGGAGGAGGAGGAGTAGGGAATGGAGGC
AGCGTCCCTGTGGAGGTTAAGAATGTTACCCTTTTTGTTTAACGAGGGAG
GGAGGGATGAAGGGAGGAAGATGGGAGGACAGAGGGAGGGACGTTTTATT
TGTGTACAGGGACACTCTTATTATTTGCAAGAGACGAGACAATCGCTTTC
AATCCCAAGGGGAGAGTAGGAAAGAATGAGGAAGGGAGGAAACGATGGAG
AGAACAACGGGATTTGTGCATGCGCCTCTGTGTAGGGGGAAGAGGAGGAG
GAAAAATGACTATCTCACGATTTTTGTGTACATATGCTGAGACCAAGAGA
AAGCAGCCACAGCAGCACAAGCGGGAAGATGGAAGAAGGAAGACGATAAA
CATAAAGGGAGATAAAGTACCCCGAGGGAGAAGTGGAACGAGAAGACGAA
TGCGGTTCCTCTGTTTTGATCCATTCAGTGTCAGTCATCTGTATGTGCGT
GCATGTGCTTGTATGTACATGTATGGTGGAAAAAGAACCGATGGGGAACG
TAAGGAATGGCGAAGCAAGACGAATTGTGTGGTTGAGGAAGACGATGATG
GAGACGAAAAGCGTAAGGGCGATAGTTGCGAGTGGGCGAAAGGAAGTAAT
TAAGGCCACCAACACGAACCGCAGAAGACAAAATTCACACAAAGAAGGTG
GGGGATAAAAGGGGAAGGGGGGAAGAAAGAGACCATTTTTGACGTCAGCA
AAGGAGAAGAAGAGCGCGAGGATCATGGCAACCAACCCAAAAAAGCACGA
AGATGAAAAACGAAAGACCCACATTACACTTATATATTATTGTGACATTT
ATCAATCAAGCATGTGAAGATAATACGTCCGATATTCCCCAAGAGAGAAA
ATGAAAAAGTGAGAACGAGAATCAGGGAAAATGAGAGAGAGACAGAGAGA
GAGAAAATAAGAGAGAGATAGGGAGGATGGAGAGGAACAAAGGAAAAGGT
ACACTATAATACGCATATTTTTATGGACGTCGACCACAACCGCCATCATA
CAACTACCAAAGTGAAACGAAGATGAATAGGGGGAAAGGAAAGGAAAGCC
AGCAGCAGCAGCAGCGGAGGCAAGACAAGCGACAGCATCAACAGTCTCAT
ACGAACAACAGAAAAAGCGAGTCAATGGGCGGATATTTCAAACATGTACA
GAGAGACCTAAAAAAAAAGAAGCAGTTGAAGAGTAGGAAGAAGAAGAAGC
AGCAGCAGTAGCATTTGCAACAGCAGCAGCCACTCGCGAGAAGACTGGAT
CAAAGCAACCCATTCAAAGCAAGAAGAGGAGAAGGGCATGTCCAAGGTCA
ACACACAGACAGAAGATGTAAGCAAGCACATACCATCGGGCAGAGTAGTG
GGCGTACGAGTGAGGGAAAGTGAGAACGGGTGAAGGCAACAGCGGCAGCT
TACCTTGTAGATTTGTCTTCGTTTGTCGTCGCCCTGCACCCTACTAGTCT
ACGTGTCCTTCCATTCCACAAGGAGAAAATAATTCGGGACGACAAAGTGT
CTCCACTCCCTACATACGATTCATCATCCATTTATCCACATTAAGTGTAC
CAACAACGAGAAGAACAAGTACCAATACAAGACGCCCAAGGAAATAATTT
GCCAGTGCTTCCACCACTTTGGAAAGGA
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protein sequence of NO03G04800.1

>NO03G04800.1-protein ID=NO03G04800.1-protein|Name=NO03G04800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=692bp
MSLDAAESMETRGDPAHQRQQELEQQQQLHYGHTDHPPPPLPPPPPFPRS
DPHHHHLHPHGPPPPFGYAVSLGVHAPPPPPHSHPSHLFPQHVIMPPAPP
GGLKSEMDDDKDIMVSAGNGGDGHGSHAHTHPSSSSSSINTTITSDGGPP
NQEDGKLFLGCKKEGCNGILLVGTTTRHGAPYQCPRCLNKQKYCQDCQQL
YINFRRHRILGHELYEFQRKRQVLIRNNHGLFVPADQSKKVPVTITGPGI
FSSGSSSSSSSSSSSSSSISVSSTSAGSTSSLLGGGGRQSQKQKQAAAAA
AAAAGVEMGGRRVRGDGRSRRPTKGRGKGHDEISLEEEEEEEGNEEGERM
KEEGEMMIYAPAGAVWTGGREGGRGGVPPTPEVAEELDDASDILVKLMQG
QSSSNKRSKTGELTSPGGGMNKPPLPKQQQQQQQRQQQPVCQQQKQQQLQ
QMETTTGAAAAATAAAAAAAAGAGAAAGAIASMSSAAGHVSSPGQAQPIE
PMSPDGPNSSALPPSSSVSNASSSSSSSSAAAFSPPPSLQPPAAWSSSNF
LASFKPPTLLPANASQMQRQQPRWVSGDAASFLPPPFSFSSKTMRENDPV
APLEIPPSLPPLPTLVGKDFGPPSTAAAAAAGTERDAGTQTSPSGSSPPP
PLLLLSSSSSRRSGRHRPVHRAQQQKLLCQRRWDQEEEEEE*
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Synonyms
Publications