NO03G04780, NO03G04780 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_026768442.1 (pseudouridine synthase [Asinibacterium sp. OR53]) HSP 1 Score: 198.7 bits (504), Expect = 2.200e-47 Identity = 102/200 (51.00%), Postives = 138/200 (69.00%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y L+ KP+ L +FSA EGK+TLAD PRDVYPVGRLD+DSEG +LLTND +NHR+LDP HEREY VQV+G +T+E +++L + G+ +N+ GK H + PC + E APP + R+PPIR RK IP+ W+R+ +TEG+NRQVRRM A GFP LRL+R+R+E+L++ + PGE+ L +KL Sbjct: 3 YFLINKPYGCLSRFSAVEGKKTLADYF--KVPRDVYPVGRLDHDSEGLLLLTNDKTLNHRLLDPGFAHEREYWVQVDGAITKEAIAQL-QSGVIINID-GKAHHTLPCKAM------VFETAPP-VPDRDPPIRFRKEIPSPWIRMILTEGKNRQVRRMTAKTGFPTLRLIRYRIEQLELGNMQPGEIIELSENTIRKKL 191
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_037326020.1 (MULTISPECIES: pseudouridine synthase [Chitinophagaceae] >PQV60450.1 ribosomal large subunit pseudouridine synthase E [Vibrionimonas magnilacihabitans]) HSP 1 Score: 198.0 bits (502), Expect = 3.800e-47 Identity = 103/200 (51.50%), Postives = 137/200 (68.50%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y L+ KP+ L QFSA EGK+TLAD PRDVYPVGRLD+DSEG +LLTND +NHR+LDP HEREY VQV+G +T E +++L + G+ +N+ GK H + PC + E APP + R+PPIR RK IP+ W+R+ +TEG+NRQVRRM A GFP LRL+R+R+E+L++ + PGE+ L +KL Sbjct: 3 YFLINKPYGCLSQFSAVEGKKTLADYF--KVPRDVYPVGRLDHDSEGLLLLTNDKTLNHRLLDPGFAHEREYWVQVDGAITGEAIAQL-QSGVIINID-GKAHHTLPCRAM------VFETAPP-VPDRDPPIRFRKEIPSPWIRMILTEGKNRQVRRMTAKAGFPTLRLIRYRIEQLELGKMQPGEIIELSENTIRKKL 191
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_092726728.1 (pseudouridine synthase [Hydrobacter penzbergensis] >SDX56917.1 ribosomal large subunit pseudouridine synthase E [Hydrobacter penzbergensis]) HSP 1 Score: 196.4 bits (498), Expect = 1.100e-46 Identity = 102/200 (51.00%), Postives = 136/200 (68.00%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y + KP+ L QFSA EGK+TLAD PRDVYPVGRLD+DSEG +LLTND +NHR+LDP HEREY VQV+G +T E +++L + G+ +N+ GK H + PC + E APP + R+PPIR RK IP+ W+R+ +TEG+NRQVRRM A GFP LRL+R+R+E+L++ + PGE+ L +KL Sbjct: 3 YFFINKPYGCLSQFSAVEGKKTLADYF--KVPRDVYPVGRLDHDSEGLLLLTNDKTLNHRLLDPGFAHEREYWVQVDGAITGEAIAQL-QSGVIINID-GKAHHTLPCRAM------VFETAPP-VPDRDPPIRFRKEIPSPWIRMILTEGKNRQVRRMTAKAGFPTLRLIRYRIEQLELGKMQPGEIIELSENTICKKL 191
BLAST of NO03G04780 vs. NCBI_GenBank
Match: SCB95977.1 (ribosomal large subunit pseudouridine synthase E [Chitinophaga costaii]) HSP 1 Score: 196.1 bits (497), Expect = 1.400e-46 Identity = 97/200 (48.50%), Postives = 136/200 (68.00%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y L++KP+ VL +FS GK TLAD P+DVYPVGRLDYDSEG +LLTNDT +N+R+L+P H REY VQV+G +T + +++L+ G+++N+ GK +R++ C + + P + R PPIR RK IP W+RL +TEG+NRQVR+M A VGFP LRL+R+R+ L V G+ PG++R L R+E +L Sbjct: 15 YYLIYKPYEVLTRFSPEAGKATLADHF--RVPKDVYPVGRLDYDSEGLLLLTNDTTINNRLLNPTFAHSREYWVQVDGAITADAINQLQH-GVNINI-EGKRYRTKRCTAM-------AFDHEPAVPERHPPIRFRKSIPAPWIRLILTEGKNRQVRKMTAAVGFPTLRLIRYRIGHLSVEGMQPGDMRTLTRDEVETQL 203
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_089709321.1 (pseudouridine synthase [Chitinophaga costaii] >PUZ26675.1 pseudouridine synthase [Chitinophaga costaii]) HSP 1 Score: 196.1 bits (497), Expect = 1.400e-46 Identity = 97/200 (48.50%), Postives = 136/200 (68.00%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y L++KP+ VL +FS GK TLAD P+DVYPVGRLDYDSEG +LLTNDT +N+R+L+P H REY VQV+G +T + +++L+ G+++N+ GK +R++ C + + P + R PPIR RK IP W+RL +TEG+NRQVR+M A VGFP LRL+R+R+ L V G+ PG++R L R+E +L Sbjct: 5 YYLIYKPYEVLTRFSPEAGKATLADHF--RVPKDVYPVGRLDYDSEGLLLLTNDTTINNRLLNPTFAHSREYWVQVDGAITADAINQLQH-GVNINI-EGKRYRTKRCTAM-------AFDHEPAVPERHPPIRFRKSIPAPWIRLILTEGKNRQVRKMTAAVGFPTLRLIRYRIGHLSVEGMQPGDMRTLTRDEVETQL 193
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_012788351.1 (pseudouridine synthase [Chitinophaga pinensis] >ACU58175.1 pseudouridine synthase [Chitinophaga pinensis DSM 2588]) HSP 1 Score: 195.3 bits (495), Expect = 2.500e-46 Identity = 99/205 (48.29%), Postives = 136/205 (66.34%), Query Frame = 0 Query: 65 YDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREG---GLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 + Y +++KPF VL +F EGK +LAD P DVYPVGRLDYDSEG ++LTND ++NHR+LDP HEREY VQV+G V E + +L++G +D GK +++R C + EE PP + R PPIR RK IP W+RL + EG+NRQVR+M A VGFP LRL+R+R+ ++ V GL PG++R + R+E ++ L Sbjct: 3 FKYYIIYKPFQVLTRFGKEEGKASLADYF--DVPSDVYPVGRLDYDSEGLLILTNDKSLNHRLLDPKFSHEREYWVQVDGAVNAEAIQQLKQGVKIAID-----GKPYQTRRCQ------AAIFEEEPP-VPERNPPIRFRKLIPAPWIRLTLGEGKNRQVRKMTAAVGFPTLRLIRYRIARITVEGLEPGQMREMDRKEIFDLL 193
BLAST of NO03G04780 vs. NCBI_GenBank
Match: SJZ68310.1 (ribosomal large subunit pseudouridine synthase E [Sediminibacterium ginsengisoli]) HSP 1 Score: 195.3 bits (495), Expect = 2.500e-46 Identity = 101/200 (50.50%), Postives = 133/200 (66.50%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y +++KP+ VL QFS GK+TLAD PRDVYPVGRLD+DSEG ++LTNDT +NHR+L P HEREY VQV+G +T + L+ L E G+D+N+ GK HR+ P R+ L E P + R PPIR RK IP W+ + + EG+NRQVR+M A GFP LRL+R R+E++D+ L PG +R L Y+KL Sbjct: 40 YFIIYKPYLVLSQFSPVHGKQTLADFF--DVPRDVYPVGRLDHDSEGLLILTNDTQLNHRLLHPKFAHEREYWVQVDGAITLQALTNL-EAGIDINVD-GKIHRTSPA----RVHLFSEE---PDVPERNPPIRYRKEIPAPWISMILNEGKNRQVRKMTAAAGFPTLRLIRRRIEEIDLVDLQPGAIRELSGRIVYQKL 228
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_078830930.1 (pseudouridine synthase [Sediminibacterium ginsengisoli]) HSP 1 Score: 195.3 bits (495), Expect = 2.500e-46 Identity = 101/200 (50.50%), Postives = 133/200 (66.50%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y +++KP+ VL QFS GK+TLAD PRDVYPVGRLD+DSEG ++LTNDT +NHR+L P HEREY VQV+G +T + L+ L E G+D+N+ GK HR+ P R+ L E P + R PPIR RK IP W+ + + EG+NRQVR+M A GFP LRL+R R+E++D+ L PG +R L Y+KL Sbjct: 4 YFIIYKPYLVLSQFSPVHGKQTLADFF--DVPRDVYPVGRLDHDSEGLLILTNDTQLNHRLLHPKFAHEREYWVQVDGAITLQALTNL-EAGIDINVD-GKIHRTSPA----RVHLFSEE---PDVPERNPPIRYRKEIPAPWISMILNEGKNRQVRKMTAAAGFPTLRLIRRRIEEIDLVDLQPGAIRELSGRIVYQKL 192
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_079471550.1 (pseudouridine synthase [Chitinophaga ginsengisegetis] >SKD08356.1 23S rRNA pseudouridine2457 synthase [Chitinophaga ginsengisegetis]) HSP 1 Score: 194.1 bits (492), Expect = 5.500e-46 Identity = 100/202 (49.50%), Postives = 134/202 (66.34%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKLQL 269 Y +++KP+ VL +F+ K LAD P DVYPVGRLDYDSEG ++LTND +N ++L P H HEREY VQV+G +T E + +L E G+ +N+ GK +R++ C +E E P + PR PPIR RK IP W+R+ + EG+NRQVRRM A VGFP LRLVR+R+E + +AG+ GE+ L REE Y KL+L Sbjct: 5 YYIIYKPYEVLTRFTPEGNKACLADYF--KVPSDVYPVGRLDYDSEGLLILTNDKTLNQQLLLPQHAHEREYWVQVDGAITAEAVQRL-EAGVQINVD-GKLYRTKQC-------RAEIFEEEPLLPPRNPPIRFRKSIPAPWIRMVLQEGKNRQVRRMTAAVGFPTLRLVRYRMEDITIAGMQSGEMVELSREEIYRKLKL 195
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_072159103.1 (pseudouridine synthase [Persicobacter sp. CCB-QB2]) HSP 1 Score: 193.7 bits (491), Expect = 7.200e-46 Identity = 106/202 (52.48%), Postives = 140/202 (69.31%), Query Frame = 0 Query: 65 YDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y Y L++KPFN L QF EG TLAD+ P+DVYPVGRLD DSEG ++LTND A+NH++L P +H++EY VQVEGE+TE+ L +LR G+ +N+ + K H + P +RI A P +E R PPIR RK IPTSW+ L +TEG+NRQVR+MVA VGFPCLRLVR +E+L V G+ GEV+ + ++ YE + Sbjct: 6 YYYYLIYKPFNTLTQFKG-EGD-TLADLY--DFPKDVYPVGRLDKDSEGLLILTNDKAINHQLLHPKFKHKKEYWVQVEGEITEDALKQLR-AGVTINVEK-KDHFTAPA-WAKRI-------AEPPLEKRNPPIRERKNIPTSWISLTITEGKNRQVRKMVASVGFPCLRLVRAGIEELKVEGMKIGEVKKIAQDRLYESV 193 The following BLAST results are available for this feature:
BLAST of NO03G04780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G04780 ID=NO03G04780|Name=NO03G04780|organism=Nannochloropsis oceanica|type=gene|length=1290bpback to top protein sequence of NO03G04780.1 >NO03G04780.1-protein ID=NO03G04780.1-protein|Name=NO03G04780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bpback to top Synonyms
Publications
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