NO03G04780.1, NO03G04780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04780.1
Unique NameNO03G04780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length807
Alignment locationchr3:1358049..1359338 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1358049..1359338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04780.1 vs.
Match: WP_018616215.1 (pseudouridine synthase [Segetibacter koreensis])

HSP 1 Score: 203.4 bits (516), Expect = 9.000e-49
Identity = 99/203 (48.77%), Postives = 143/203 (70.44%), Query Frame = 0
Query:   64 VYDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267
            ++ Y +++KP++VL QFS+ + K TL +      P+DVYPVGRLDYDSEG ++LTND ++NHR+L+P ++HEREY VQVEG +T++ +  LR+G + +++  GK H++ PC        +     PP +  R PPIR RK IP SW+ L + EG+NRQVRRM A VGFP LRL+R+R++KL +A + PGE++ L +EE YE L
Sbjct:    3 MHRYFIIYKPYHVLTQFSSEDRKTTLKEHF--NVPKDVYPVGRLDYDSEGLLILTNDASLNHRLLNPQYKHEREYWVQVEGSITKQAIDDLRKGVV-ISID-GKQHKTLPCK-------AYSFTEPPTVFERHPPIRFRKNIPVSWISLTLIEGKNRQVRRMTAKVGFPTLRLIRYRIQKLTLADMRPGEMKELTKEEIYEAL 194          
The following BLAST results are available for this feature:
BLAST of NO03G04780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_018616215.19.000e-4948.77pseudouridine synthase [Segetibacter koreensis][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04780NO03G04780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04780.1NO03G04780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04780.1.cds1NO03G04780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04780.1.cds2NO03G04780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04780.1 ID=NO03G04780.1|Name=NO03G04780.1|organism=Nannochloropsis oceanica|type=mRNA|length=807bp
ATGGGGAAGGGCAAGGGAGGGGAGGTTAAAATCGCCTTCGTCGACCCCAC
ATTCAGGGTGTTGGCGTTGGAGAGGTTGAAGGAGGGAGGGGATGAGGCGG
CGAAGGAGGAAGTGCTCATGGAGGTTAAAATGGCCATGAGATCCCGTCGA
CTTCGCCCCCCCTCAGGCGCCCGCGGGGCAGGCCGCGCCGTGTACGACTA
CCTGCTTTTGTTCAAGCCTTTCAACGTGCTGTGTCAATTTTCGGCACACG
AGGGGAAGCGGACGCTTGCGGACGTGCTGCCGCCCACCACGCCCCGGGAT
GTTTATCCAGTGGGAAGGTTGGATTACGATTCCGAGGGTTTTGTATTGCT
GACGAATGACACGGCGGTTAACCACCGCATGCTGGACCCCGTACACGAAC
ATGAACGGGAGTACCTTGTTCAAGTCGAAGGAGAGGTGACTGAGGAAGGA
TTGAGCAAATTAAGAGAAGGAGGGCTCGATCTCAACCTCGGTCGGGGGAA
AACCCATCGTTCCCGACCTTGTCCCCTCGTTGAGCGTATAATCCTCTCTG
AAGGCGAAGAAGCCCCTCCGGGTATCGAGCCACGGGAACCCCCCATTCGG
GCAAGAAAGTTCATTCCCACCTCCTGGCTTCGCCTCGGCATGACAGAGGG
TAGAAACCGACAAGTGCGTCGCATGGTGGCCATGGTGGGGTTTCCTTGTT
TGCGCTTAGTGCGATGGCGAGTGGAGAAGCTTGACGTGGCGGGCTTGGGT
CCCGGAGAGGTGCGGGTGTTGAGAAGGGAAGAAACATACGAGAAACTACA
ACTATGA
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protein sequence of NO03G04780.1

>NO03G04780.1-protein ID=NO03G04780.1-protein|Name=NO03G04780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MGKGKGGEVKIAFVDPTFRVLALERLKEGGDEAAKEEVLMEVKMAMRSRR
LRPPSGARGAGRAVYDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRD
VYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEG
LSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIR
ARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLG
PGEVRVLRREETYEKLQL*
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mRNA from alignment at chr3:1358049..1359338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04780.1 ID=NO03G04780.1|Name=NO03G04780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp|location=Sequence derived from alignment at chr3:1358049..1359338- (Nannochloropsis oceanica)
ATGGGGAAGGGCAAGGGAGGGGAGGTTAAAATCGCCTTCGTCGACCCCAC ATTCAGGGTGTTGGCGTTGGAGAGGTTGAAGGAGGGAGGGGATGAGGCGG CGAAGGAGGAAGTGCTCATGGAGGTTAAAATGGCCATGGTGTGTCCAGTG GAAGCGTTTGAAGGGGAAGGGGGCGAGGGGGGAGGGGAGCCCTTCCCGAG GATAAACTCTAAGGAAAGATTAGGCAAAATATAATTTTCATTTTTTTTTT TTTTTTACATATCATATATTCATACACTCAGATACCATACTTGAGGCATA AACAGGCAGGGTCAAGTCCCCTAGCAACAGGGCTCGCCGGCAAACGCTTT AAAACGCTCAACGCCTCATCAAGCCTCCCATCTTATGTCCTATCCCGACC TTAAGATGCTACAATCACTGCTTCGAACAAAAACGTCCACACCAACCGCA ACGTGTCGCCGTGCTTCTGCAGGACAAGTCCCTGCATGCCTGTCTGTCTC CGCCTTCTCATGGACCGCGATTTCCAGACAGGCTCCAGCCTGCCTGTCTG TCGCCCCCCACTCCTCCTTAAGCAGCGGCGGCGGAAACAGACAAAGCCCC TCTCCACTACCATCGACCCAGAGATCCCGTCGACTTCGCCCCCCCTCAGG CGCCCGCGGGGCAGGCCGCGCCGTGTACGACTACCTGCTTTTGTTCAAGC CTTTCAACGTGCTGTGTCAATTTTCGGCACACGAGGGGAAGCGGACGCTT GCGGACGTGCTGCCGCCCACCACGCCCCGGGATGTTTATCCAGTGGGAAG GTTGGATTACGATTCCGAGGGTTTTGTATTGCTGACGAATGACACGGCGG TTAACCACCGCATGCTGGACCCCGTACACGAACATGAACGGGAGTACCTT GTTCAAGTCGAAGGAGAGGTGACTGAGGAAGGATTGAGCAAATTAAGAGA AGGAGGGCTCGATCTCAACCTCGGTCGGGGGAAAACCCATCGTTCCCGAC CTTGTCCCCTCGTTGAGCGTATAATCCTCTCTGAAGGCGAAGAAGCCCCT CCGGGTATCGAGCCACGGGAACCCCCCATTCGGGCAAGAAAGTTCATTCC CACCTCCTGGCTTCGCCTCGGCATGACAGAGGGTAGAAACCGACAAGTGC GTCGCATGGTGGCCATGGTGGGGTTTCCTTGTTTGCGCTTAGTGCGATGG CGAGTGGAGAAGCTTGACGTGGCGGGCTTGGGTCCCGGAGAGGTGCGGGT GTTGAGAAGGGAAGAAACATACGAGAAACTACAACTATGA
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Coding sequence (CDS) from alignment at chr3:1358049..1359338-

>NO03G04780.1 ID=NO03G04780.1|Name=NO03G04780.1|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr3:1358049..1359338- (Nannochloropsis oceanica)
ATGGGGAAGGGCAAGGGAGGGGAGGTTAAAATCGCCTTCGTCGACCCCAC
ATTCAGGGTGTTGGCGTTGGAGAGGTTGAAGGAGGGAGGGGATGAGGCGG
CGAAGGAGGAAGTGCTCATGGAGGTTAAAATGGCCATGAGATCCCGTCGA
CTTCGCCCCCCCTCAGGCGCCCGCGGGGCAGGCCGCGCCGTGTACGACTA
CCTGCTTTTGTTCAAGCCTTTCAACGTGCTGTGTCAATTTTCGGCACACG
AGGGGAAGCGGACGCTTGCGGACGTGCTGCCGCCCACCACGCCCCGGGAT
GTTTATCCAGTGGGAAGGTTGGATTACGATTCCGAGGGTTTTGTATTGCT
GACGAATGACACGGCGGTTAACCACCGCATGCTGGACCCCGTACACGAAC
ATGAACGGGAGTACCTTGTTCAAGTCGAAGGAGAGGTGACTGAGGAAGGA
TTGAGCAAATTAAGAGAAGGAGGGCTCGATCTCAACCTCGGTCGGGGGAA
AACCCATCGTTCCCGACCTTGTCCCCTCGTTGAGCGTATAATCCTCTCTG
AAGGCGAAGAAGCCCCTCCGGGTATCGAGCCACGGGAACCCCCCATTCGG
GCAAGAAAGTTCATTCCCACCTCCTGGCTTCGCCTCGGCATGACAGAGGG
TAGAAACCGACAAGTGCGTCGCATGGTGGCCATGGTGGGGTTTCCTTGTT
TGCGCTTAGTGCGATGGCGAGTGGAGAAGCTTGACGTGGCGGGCTTGGGT
CCCGGAGAGGTGCGGGTGTTGAGAAGGGAAGAAACATACGAGAAACTACA
ACTATGA
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Synonyms
Publications