NO03G04700, NO03G04700 (gene) Nannochloropsis oceanica

Overview
NameNO03G04700
Unique NameNO03G04700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2241
Alignment locationchr3:1340638..1342878 -

Link to JBrowse

Properties
Property NameValue
DescriptionHistone deacetylase 6
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1340638..1342878 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023696Ureohydrolase_domain
IPR023801His_deacetylse_dom
IPR000286His_deacetylse
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO03G04700 vs. NCBI_GenBank
Match: EWM29907.1 (histone deacetylase 6 [Nannochloropsis gaditana])

HSP 1 Score: 490.0 bits (1260), Expect = 1.100e-134
Identity = 275/534 (51.50%), Postives = 349/534 (65.36%), Query Frame = 0
Query:    1 MTVSWEIIVERDGKNS-----NSTNRSTSSTDLADLLHLPACPRLLGVANATALAATQTMTTVHNHDVEENKAETPSSSFVRLLSSSLVEEPVDRSLHLGAKRPRATETIAQPHFAPAVTTKASFKFCRPLGGTGLYYDAVHQRHHHPGRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLS-LAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLGVSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFPGTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLM-EKEGG 528
            M  S EII+ER+  N+      +  R+     L      PACPR+L ++ + A + T+   +    D  E  A  P+   + LL     + P  RS   G KRPR+  +        +VT+ A  K       TGLYYDA+H+ H+HP RKHPERPERVE I++HLA +G+LDKLT+L  A+   Y  +  VH+ +YL+RLRR E   +   +   + R           ++ +LQ+EA QFDSVYLN S++ CAR+A GGL+LLV+ V+ +         S  S EG+     LS  A     N  S S I  RS+  SHS P LRNGLALIRPPGHHAE+H ARGFCL+N+VA+AA+ AR+ LG+SK+LICDWDVHHGQGTQ+MFWKD SVLYFSVHR+D+G F+PG+GSP+ V       YTINVAWN+GGMGD EYR+VW+++LLPVARAF PELILVSAGFDGA+GD MGGCE+T + GFG M + LV  V SA+GRVVLALEGGY+LS+LGECVEACL  L    EGG
Sbjct:    1 MAASGEIILERESPNTCAGGIEAATRNRCKIKLDAFTGPPACPRVLHISPSVATSTTKAPAS--QLDAAEKCANPPALHRLHLLP----DRPTIRSCQTGIKRPRSPSSGHIQDVWASVTSGAPVKSSNL--ETGLYYDAIHRLHYHPDRKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQ---------LLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVG-------STRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKHAREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPGSGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEALTGPSEGG 510          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_013408875.1 (LOW QUALITY PROTEIN: histone deacetylase 6-like [Lingula anatina])

HSP 1 Score: 245.7 bits (626), Expect = 3.500e-61
Identity = 157/444 (35.36%), Postives = 222/444 (50.00%), Query Frame = 0
Query:  129 TGLYYDAVHQRH-HHPGRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLGVSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFPG--TGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGE----CVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCL 566
            T L YD V ++H +H    HPERP+R+  I + +    LL K  L   +  A  + + + H T + +++++++               + K +E        L+E   Q++SVYL + + +CA  A G L+ +VEAV+T++S                                                   +NG+A+IRPPGHHAE + A GFCL NNVAIAA++A++  GV K+LI DWDVHHG G Q +F  D SVLY S+HRYD G FFP    G+   V       + IN+ WN+ GMGD EY   + +V++PVA  F+P+L+LVSAGFD A+GD +G C++T   G+G MTQ L   +  A GRV+LALEGGY L  + E    C +  LGG     G                            +  H+KYW CL
Sbjct:  592 TALVYDEVMRKHKNHVDPGHPERPDRITKIYNKIQEYRLL-KHCLRVESRMATDEEVLTCHKTEHFKKMQQIK---------------ETKPRE--------LKEVQLQYNSVYLCQESYDCALLAVGSLLNVVEAVLTNKS---------------------------------------------------QNGVAVIRPPGHHAEINQACGFCLFNNVAIAARYAQKTFGVKKVLILDWDVHHGNGIQHIFEDDPSVLYISIHRYDQGFFFPAGPDGNYDKVGNGAGAGFNINIPWNKYGMGDAEYIAAFLQVIMPVAYEFDPDLVLVSAGFDAARGDPLGHCDIT-PAGYGHMTQML---MSLANGRVILALEGGYNLHSISESMAMCTKVLLGGTCPPLGS-------------LVPKTMAVESICNVLDTHKKYWKCL 943          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_006171993.1 (PREDICTED: histone deacetylase 6 isoform X1 [Tupaia chinensis] >XP_006171994.1 PREDICTED: histone deacetylase 6 isoform X1 [Tupaia chinensis] >XP_006171995.1 PREDICTED: histone deacetylase 6 isoform X1 [Tupaia chinensis] >XP_006171996.1 PREDICTED: histone deacetylase 6 isoform X1 [Tupaia chinensis])

HSP 1 Score: 244.2 bits (622), Expect = 1.000e-60
Identity = 166/467 (35.55%), Postives = 216/467 (46.25%), Query Frame = 0
Query:  125 PLGGTGLYYDAVHQRHHHP-GRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLG-VSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFP--GTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSKSV 588
            P   TGL YD     HH+     HPE P+R+  IMS L   GL  +   L  A  A    L + HS  Y+ RLR  E + S                         L  E A +DS+Y+  ST  CA+ A G +  LVEAV+                                                      + NG A++RPPGHHAE   A GFC  N+VA+AA+ A+   G   +ILI DWDVHHG GTQ MF  D SVLY S+HRYD+G+FFP    G+   +       +T+NVAWN   MGD +Y   W R++LP+A  F PEL+LVSAGFD A+GD +GGC+V+ + G+  +T  L   +  A GRV+L LEGGY L+ + E + AC+  L+                               TI VHR+YW  L     +D      EE+  SKSV
Sbjct:  475 PKARTGLVYDQRMMSHHNLWDNHHPEMPQRISRIMSRLEELGLARRCLPL-PARLATNAELLTCHSAEYVSRLRATERMKS-----------------------RELHREGANYDSIYICPSTFACAQLATGAVCRLVEAVLRGE---------------------------------------------------VLNGAAIVRPPGHHAEQDAACGFCFFNSVAVAARHAQALSGRALRILIVDWDVHHGNGTQHMFEDDPSVLYMSLHRYDHGTFFPMGHEGASNQIGRAAGIGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPE-GYAHLTHLL---MGLANGRVLLILEGGYNLTSISESMAACIHSLL--------GDSPPLLALQRPPLSGALASITETIQVHRRYWRSLRVTKAED-----KEELSISKSV 849          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_006171997.2 (PREDICTED: histone deacetylase 6 isoform X2 [Tupaia chinensis])

HSP 1 Score: 244.2 bits (622), Expect = 1.000e-60
Identity = 166/467 (35.55%), Postives = 216/467 (46.25%), Query Frame = 0
Query:  125 PLGGTGLYYDAVHQRHHHP-GRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLG-VSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFP--GTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSKSV 588
            P   TGL YD     HH+     HPE P+R+  IMS L   GL  +   L  A  A    L + HS  Y+ RLR  E + S                         L  E A +DS+Y+  ST  CA+ A G +  LVEAV+                                                      + NG A++RPPGHHAE   A GFC  N+VA+AA+ A+   G   +ILI DWDVHHG GTQ MF  D SVLY S+HRYD+G+FFP    G+   +       +T+NVAWN   MGD +Y   W R++LP+A  F PEL+LVSAGFD A+GD +GGC+V+ + G+  +T  L   +  A GRV+L LEGGY L+ + E + AC+  L+                               TI VHR+YW  L     +D      EE+  SKSV
Sbjct:  448 PKARTGLVYDQRMMSHHNLWDNHHPEMPQRISRIMSRLEELGLARRCLPL-PARLATNAELLTCHSAEYVSRLRATERMKS-----------------------RELHREGANYDSIYICPSTFACAQLATGAVCRLVEAVLRGE---------------------------------------------------VLNGAAIVRPPGHHAEQDAACGFCFFNSVAVAARHAQALSGRALRILIVDWDVHHGNGTQHMFEDDPSVLYMSLHRYDHGTFFPMGHEGASNQIGRAAGIGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPE-GYAHLTHLL---MGLANGRVLLILEGGYNLTSISESMAACIHSLL--------GDSPPLLALQRPPLSGALASITETIQVHRRYWRSLRVTKAED-----KEELSISKSV 822          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_014441096.1 (PREDICTED: histone deacetylase 6 isoform X3 [Tupaia chinensis])

HSP 1 Score: 244.2 bits (622), Expect = 1.000e-60
Identity = 166/467 (35.55%), Postives = 216/467 (46.25%), Query Frame = 0
Query:  125 PLGGTGLYYDAVHQRHHHP-GRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLG-VSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFP--GTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSKSV 588
            P   TGL YD     HH+     HPE P+R+  IMS L   GL  +   L  A  A    L + HS  Y+ RLR  E + S                         L  E A +DS+Y+  ST  CA+ A G +  LVEAV+                                                      + NG A++RPPGHHAE   A GFC  N+VA+AA+ A+   G   +ILI DWDVHHG GTQ MF  D SVLY S+HRYD+G+FFP    G+   +       +T+NVAWN   MGD +Y   W R++LP+A  F PEL+LVSAGFD A+GD +GGC+V+ + G+  +T  L   +  A GRV+L LEGGY L+ + E + AC+  L+                               TI VHR+YW  L     +D      EE+  SKSV
Sbjct:  271 PKARTGLVYDQRMMSHHNLWDNHHPEMPQRISRIMSRLEELGLARRCLPL-PARLATNAELLTCHSAEYVSRLRATERMKS-----------------------RELHREGANYDSIYICPSTFACAQLATGAVCRLVEAVLRGE---------------------------------------------------VLNGAAIVRPPGHHAEQDAACGFCFFNSVAVAARHAQALSGRALRILIVDWDVHHGNGTQHMFEDDPSVLYMSLHRYDHGTFFPMGHEGASNQIGRAAGIGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPE-GYAHLTHLL---MGLANGRVLLILEGGYNLTSISESMAACIHSLL--------GDSPPLLALQRPPLSGALASITETIQVHRRYWRSLRVTKAED-----KEELSISKSV 645          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_006997585.1 (PREDICTED: histone deacetylase 6 isoform X2 [Peromyscus maniculatus bairdii] >XP_015846093.1 PREDICTED: histone deacetylase 6 isoform X2 [Peromyscus maniculatus bairdii] >XP_015846094.1 PREDICTED: histone deacetylase 6 isoform X2 [Peromyscus maniculatus bairdii])

HSP 1 Score: 243.0 bits (619), Expect = 2.300e-60
Identity = 166/462 (35.93%), Postives = 216/462 (46.75%), Query Frame = 0
Query:  129 TGLYYDAVHQRHHHP-GRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDS-LESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLG-VSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFP--GTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSK 586
            TGL YD     H +     HPE P+R+  IM HL   GL  +  +L    R   D+ L + HS  Y++R+R  E + +                         L  E A FDS+Y+  ST  CA+ AAG    LVEAV++                                                     + NG+A++RPPGHHAEA  A GFC  N+VA+AA+ A+   G   +ILI DWDVHHG GTQ MF  D SVLY S+HRYD G+FFP    G+   V       +T+NV WN   MGD +Y   W R++LP+A  F PEL+LVSAGFD A+GD +GGC+VT + G+  +T  L   +  A GR++L LEGGY L+ + E + AC   L+                               TI VHRKYW  L     +D     GEE  SSK
Sbjct:  480 TGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEELGLASRCLILPV--RPAMDAELLTCHSAEYVERIRATEKMKT-----------------------RELHREGASFDSIYICPSTFSCAQLAAGAACRLVEAVLSGE---------------------------------------------------VLNGIAIVRPPGHHAEADAACGFCFFNSVAVAARHAQAIAGRALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRAAGLGFTVNVPWNGPRMGDADYLMTWYRLVLPIAYEFNPELVLVSAGFDAAQGDPLGGCQVTPE-GYAHLTHLL---MGLANGRIILVLEGGYNLASISESMAACTHSLL--------GDPPPPLTLLRPPQPGALASITETIQVHRKYWRSLRLMKMED-----GEECSSSK 848          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_015846092.1 (PREDICTED: histone deacetylase 6 isoform X1 [Peromyscus maniculatus bairdii])

HSP 1 Score: 243.0 bits (619), Expect = 2.300e-60
Identity = 166/462 (35.93%), Postives = 216/462 (46.75%), Query Frame = 0
Query:  129 TGLYYDAVHQRHHHP-GRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDS-LESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLG-VSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFP--GTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSK 586
            TGL YD     H +     HPE P+R+  IM HL   GL  +  +L    R   D+ L + HS  Y++R+R  E + +                         L  E A FDS+Y+  ST  CA+ AAG    LVEAV++                                                     + NG+A++RPPGHHAEA  A GFC  N+VA+AA+ A+   G   +ILI DWDVHHG GTQ MF  D SVLY S+HRYD G+FFP    G+   V       +T+NV WN   MGD +Y   W R++LP+A  F PEL+LVSAGFD A+GD +GGC+VT + G+  +T  L   +  A GR++L LEGGY L+ + E + AC   L+                               TI VHRKYW  L     +D     GEE  SSK
Sbjct:  526 TGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEELGLASRCLILPV--RPAMDAELLTCHSAEYVERIRATEKMKT-----------------------RELHREGASFDSIYICPSTFSCAQLAAGAACRLVEAVLSGE---------------------------------------------------VLNGIAIVRPPGHHAEADAACGFCFFNSVAVAARHAQAIAGRALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRAAGLGFTVNVPWNGPRMGDADYLMTWYRLVLPIAYEFNPELVLVSAGFDAAQGDPLGGCQVTPE-GYAHLTHLL---MGLANGRIILVLEGGYNLASISESMAACTHSLL--------GDPPPPLTLLRPPQPGALASITETIQVHRKYWRSLRLMKMED-----GEECSSSK 894          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_015846095.1 (PREDICTED: histone deacetylase 6 isoform X3 [Peromyscus maniculatus bairdii])

HSP 1 Score: 243.0 bits (619), Expect = 2.300e-60
Identity = 166/462 (35.93%), Postives = 216/462 (46.75%), Query Frame = 0
Query:  129 TGLYYDAVHQRHHHP-GRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDS-LESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLG-VSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFP--GTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSK 586
            TGL YD     H +     HPE P+R+  IM HL   GL  +  +L    R   D+ L + HS  Y++R+R  E + +                         L  E A FDS+Y+  ST  CA+ AAG    LVEAV++                                                     + NG+A++RPPGHHAEA  A GFC  N+VA+AA+ A+   G   +ILI DWDVHHG GTQ MF  D SVLY S+HRYD G+FFP    G+   V       +T+NV WN   MGD +Y   W R++LP+A  F PEL+LVSAGFD A+GD +GGC+VT + G+  +T  L   +  A GR++L LEGGY L+ + E + AC   L+                               TI VHRKYW  L     +D     GEE  SSK
Sbjct:  426 TGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEELGLASRCLILPV--RPAMDAELLTCHSAEYVERIRATEKMKT-----------------------RELHREGASFDSIYICPSTFSCAQLAAGAACRLVEAVLSGE---------------------------------------------------VLNGIAIVRPPGHHAEADAACGFCFFNSVAVAARHAQAIAGRALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRAAGLGFTVNVPWNGPRMGDADYLMTWYRLVLPIAYEFNPELVLVSAGFDAAQGDPLGGCQVTPE-GYAHLTHLL---MGLANGRIILVLEGGYNLASISESMAACTHSLL--------GDPPPPLTLLRPPQPGALASITETIQVHRKYWRSLRLMKMED-----GEECSSSK 794          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_015846096.1 (PREDICTED: histone deacetylase 6 isoform X4 [Peromyscus maniculatus bairdii] >XP_015846097.1 PREDICTED: histone deacetylase 6 isoform X4 [Peromyscus maniculatus bairdii])

HSP 1 Score: 243.0 bits (619), Expect = 2.300e-60
Identity = 166/462 (35.93%), Postives = 216/462 (46.75%), Query Frame = 0
Query:  129 TGLYYDAVHQRHHHP-GRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDS-LESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLG-VSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFP--GTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSK 586
            TGL YD     H +     HPE P+R+  IM HL   GL  +  +L    R   D+ L + HS  Y++R+R  E + +                         L  E A FDS+Y+  ST  CA+ AAG    LVEAV++                                                     + NG+A++RPPGHHAEA  A GFC  N+VA+AA+ A+   G   +ILI DWDVHHG GTQ MF  D SVLY S+HRYD G+FFP    G+   V       +T+NV WN   MGD +Y   W R++LP+A  F PEL+LVSAGFD A+GD +GGC+VT + G+  +T  L   +  A GR++L LEGGY L+ + E + AC   L+                               TI VHRKYW  L     +D     GEE  SSK
Sbjct:  340 TGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEELGLASRCLILPV--RPAMDAELLTCHSAEYVERIRATEKMKT-----------------------RELHREGASFDSIYICPSTFSCAQLAAGAACRLVEAVLSGE---------------------------------------------------VLNGIAIVRPPGHHAEADAACGFCFFNSVAVAARHAQAIAGRALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRAAGLGFTVNVPWNGPRMGDADYLMTWYRLVLPIAYEFNPELVLVSAGFDAAQGDPLGGCQVTPE-GYAHLTHLL---MGLANGRIILVLEGGYNLASISESMAACTHSLL--------GDPPPPLTLLRPPQPGALASITETIQVHRKYWRSLRLMKMED-----GEECSSSK 708          
BLAST of NO03G04700 vs. NCBI_GenBank
Match: XP_004612981.1 (PREDICTED: histone deacetylase 6 [Sorex araneus])

HSP 1 Score: 242.3 bits (617), Expect = 3.800e-60
Identity = 176/503 (34.99%), Postives = 228/503 (45.33%), Query Frame = 0
Query:   67 KAETPSSSFVRLLSSSLVEEPVDRSLHLGAKRPRATETIAQPHFAPAVTTKASFKFCRPLGGTGLYYDAVHQRHHHP-GRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQ-RLGVSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFP--GTGSPKGVXXXXXXXYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEXXXXXXXXXXXXXXXXXXXXXXXXRTIAVHRKYWPCL 566
            +A  P    + L + SL  +PV+R      K      ++  P  AP ++             TGL  D    +H++     HPERPER+  IM  L   GL+ +  LL +     Y+ L   HS  YL RLR                       EKM G    L  E+  FDS+Y+  ST  CA+ AAG    +VEAV++                                                     + NG+A++RPPGHHAE + A GFC  N V+IAA+ A+     V +ILI DWDVHHG GTQ  F  D SVLY S+HRYD+G+FFP    GS   V       Y INVAWN   MGD EY   W R++LPVA  F PELILVSAGFD A+GD +GGC VT + G+  +T  L   +  A GR+++ LEGGY L+ + E + AC   L+                               TI VHR+YW  L
Sbjct:  431 EALEPFWEILALSAESLKGDPVERESPENNKEKEKATSLESPS-APVLSWPTL------QARTGLISDQRMMQHYNIWDSHHPERPERISRIMCRLEELGLVKRCHLLAARPATDYELLR-CHSVEYLSRLRA---------------------TEKMKG--RELHRESISFDSIYICPSTFSCAQLAAGSTCRMVEAVLSGE---------------------------------------------------VLNGIAVVRPPGHHAEMNTACGFCFFNTVSIAARHAQAFSRKVLRILIIDWDVHHGNGTQHTFEDDSSVLYISLHRYDHGTFFPVGDEGSSSKVGRGDGAGYNINVAWNGPRMGDTEYLAAWHRLVLPVAYEFNPELILVSAGFDAARGDPLGGCLVTPE-GYAHLTHLL---MGLAGGRIIIVLEGGYNLTSISESMAACTRTLL--------GDPPPLLALDRPLKANALASISETIQVHRRYWRSL 839          
The following BLAST results are available for this feature:
BLAST of NO03G04700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29907.11.100e-13451.50histone deacetylase 6 [Nannochloropsis gaditana][more]
XP_013408875.13.500e-6135.36LOW QUALITY PROTEIN: histone deacetylase 6-like [L... [more]
XP_006171993.11.000e-6035.55PREDICTED: histone deacetylase 6 isoform X1 [Tupai... [more]
XP_006171997.21.000e-6035.55PREDICTED: histone deacetylase 6 isoform X2 [Tupai... [more]
XP_014441096.11.000e-6035.55PREDICTED: histone deacetylase 6 isoform X3 [Tupai... [more]
XP_006997585.12.300e-6035.93PREDICTED: histone deacetylase 6 isoform X2 [Perom... [more]
XP_015846092.12.300e-6035.93PREDICTED: histone deacetylase 6 isoform X1 [Perom... [more]
XP_015846095.12.300e-6035.93PREDICTED: histone deacetylase 6 isoform X3 [Perom... [more]
XP_015846096.12.300e-6035.93PREDICTED: histone deacetylase 6 isoform X4 [Perom... [more]
XP_004612981.13.800e-6034.99PREDICTED: histone deacetylase 6 [Sorex araneus][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005414NSK005414Nannochloropsis salina (N. salina CCMP1776)gene
NSK005510NSK005510Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04700.1NO03G04700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573061gene_1675Nannochloropsis oceanica (N. oceanica CCMP1779)gene
HDAC6gene731Nannochloropsis gaditana (N. gaditana B-31)gene
Naga_100017g40gene813Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04700.1NO03G04700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04700 ID=NO03G04700|Name=NO03G04700|organism=Nannochloropsis oceanica|type=gene|length=2241bp
AATGAGgtacgtgcccgacacaaaatacgtgacaatcgaaagcgatacat
atatatgagcgttgagcgagccgttgaggtgcatccgagacgtggtcgct
tcgcatgccccgatccttcctcacggccgtgccaaatatagccccattta
ggctctgacccaatcaatcttttccacaatcaacgcagGTGGGCTGTGCT
TGCGTGAGGATGACAGTGTCTTGGGAGATAATTGTTGAGCGTGATGGCAA
GAACAGCAATAGCACTAACCGCAGTACCAGCAGCACGGACCTCGCTGACC
TCCTTCACCTGCCCGCCTGCCCACGCTTGCTGGGGGTCGCAAACGCCACG
GCTTTAGCTGCGACACAGACTATGACTACAGTACACAATCACGATGTGGA
AGAGAACAAGGCTGAGACGCCATCCTCTTCTTTCGTGCGGCTGCTCTCCT
CTTCTCTCGTGGAGGAGCCAGTAGACCGGTCGCTCCACTTAGGGGCCAAG
CGACCTCGCGCCACCGAGACCATTGCTCAGCCCCATTTCGCACCCGCAGT
AACAACAAAAGCGAGCTTTAAATTTTGCCGTCCCCTTGGCGGTACTGGGT
TGTATTACGACGCAGTGCACCAGCGACATCACCACCCTGGACGAAAGCAC
CCCGAGCGGCCTGAGCGAGTGGAAGCCATCATGTCGCACCTTGCCTGTCA
GGGCCTCCTCGACAAACTCACTCTGCTACAAAGTGCAGATAGAGCTTGCT
ATGATAGCTTGGAAAGCGTACACAGTACATACTACCTGCAAAGACTCCGA
AGATTGGAAGCTCTCTCATCTACTATTTCTGACACCGACAATGAAGGGAG
GGGCGATGAGAAGTTCAAAGAAAAGATGGGCGGTGTCATGGCACGCCTCC
AGGAAGAAGCAGCACAGTTCGACTCTGTCTACCTGAACGAATCCACGATT
GAATGTGCACGGAAAGCAGCGGGTGGATTAATGCTCTTGGTGGAAGCTGT
CATGACTTCGCGATCGAGACAGTTATCTTTTTCTACAAGTGCAGGGAGCC
AAGAAGGTATCTTATCACCACCAAGACTCTCCTTGGCCGAAAGTAGCAAT
TGTAACGTCAGTAGTACTTCCATTATTACATCAAGAAGCAGCACCACTTC
TCACTCTCTGCCACCCCTTCGTAACGGCCTCGCCCTGATTCGTCCCCCCG
GGCATCATGCGGAAGCGCACCATGCCCGTGGCTTCTGTCTTCTTAATAAT
GTCGCGATCGCCGCTCAATTTGCCCGACAAAGGCTAGGTGTCAGCAAAAT
CTTGATATGTGACTGGGACGTGCATCATGGGCAGGGTACCCAGCAGATGT
TCTGGAAGGATAAGTCTGTGCTATATTTCTCTGTGCATAGGTATGACAAT
GGAAGCTTTTTTCCGGGCACGGGCTCACCGAAAGGGGTAGGAGAGGGGGA
GGGAGAGGGTTACACAATAAATGTGGCATGGAATGAGGGAGGGATGGGGG
ACAGGGAGTACAGGGAGGTCTGGAGGAGGGTATTATTGCCGGTAGCGAGG
GCATTTGAGCCGGAGTTGATTTTGGTGTCGGCGGGGTTCGACGGGGCAAA
AGGGGATGGAATGGGGGGATGTGAGGTTACAGGAAAGGGTGGATTTGGAT
GGATGACGCAACGGCTGGTGCGGGAGGTAGAGAGCGCGCAGGGAAGGGTG
GTGTTGGCCCTGGAGGGAGGTTACAAATTGAGTGTGTTGGGGGAGTGCGT
GGAGGCTTGTTTGGGAGGTTTGATGGAGAAGGAAGGAGGAGAAGGTGGGG
ATGAGGAGACGAACGAGGATACTGAAGAGGAAGAGATTAGAGAGGAGGCG
ACAGAGGCGATTGCGAGGACGATTGCGGTGCACAGGAAGTACTGGCCATG
TTTGGGTGGGGGGCTTGGTGATGACGGTCACGGGAAGGAGGGAGAGGAGG
TGAAGAGTAGTAAAAGTGTATAAGGCGAGTAACGGTTGTGTAGCCCTTGC
TATTTTCAAACGGTAAGGTAGGTAATATTTTAAACGGTACGGTAGGTGTA
TATGCTTCCACGCATCTCGAGAGAGAAAGAAAATTGATAGGACTGTGTGG
CTTGTTGGAGCGTTTGTCGGCTTTTCATACACTCATTATCTTGGCGTTAG
TAAGAGTAACGCTTGGGTGCGTGTGTAAATGACAATGTAAAAATTTAAAG
AGAAAGGAAAATAAAGATAAAATATGACTGGCGAGGCGTTT
back to top

protein sequence of NO03G04700.1

>NO03G04700.1-protein ID=NO03G04700.1-protein|Name=NO03G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MTVSWEIIVERDGKNSNSTNRSTSSTDLADLLHLPACPRLLGVANATALA
ATQTMTTVHNHDVEENKAETPSSSFVRLLSSSLVEEPVDRSLHLGAKRPR
ATETIAQPHFAPAVTTKASFKFCRPLGGTGLYYDAVHQRHHHPGRKHPER
PERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLE
ALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECA
RKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNV
SSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAI
AAQFARQRLGVSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSF
FPGTGSPKGVGEGEGEGYTINVAWNEGGMGDREYREVWRRVLLPVARAFE
PELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLA
LEGGYKLSVLGECVEACLGGLMEKEGGEGGDEETNEDTEEEEIREEATEA
IARTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSKSV*
back to top
Synonyms
Publications