NO03G04700.1, NO03G04700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04700.1
Unique NameNO03G04700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2059
Alignment locationchr3:1340638..1342878 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1340638..1342878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04700.1 vs.
Match: EWM29907.1 (histone deacetylase 6 [Nannochloropsis gaditana])

HSP 1 Score: 505.4 bits (1300), Expect = 2.400e-139
Identity = 282/536 (52.61%), Postives = 356/536 (66.42%), Query Frame = 0 
Query:    1 MTVSWEIIVERDGKNS-----NSTNRSTSSTDLADLLHLPACPRLLGVANATALAATQTMTTVHNHDVEENKAETPSSSFVRLLSSSLVEEPVDRSLHLGAKRPRATETIAQPHFAPAVTTKASFKFCRPLGGTGLYYDAVHQRHHHPGRKHPERPERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLEALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECARKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLS-LAESSNCNVSSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLGVSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFPGTGSPKGVGEGEGEGYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECVEACLGGLMEKEGGEGG 531
            M  S EII+ER+  N+      +  R+     L      PACPR+L ++ + A + T+   +    D  E  A  P+   + LL     + P  RS   G KRPR+  +        +VT+ A  K       TGLYYDA+H+ H+HP RKHPERPERVE I++HLA +G+LDKLT+L  A+   Y  +  VH+ +YL+RLRR E   +   +   + R           ++ +LQ+EA QFDSVYLN S++ CAR+A GGL+LLV+ V+ +         S  S EG+     LS  A     N  S S I  RS+  SHS P LRNGLALIRPPGHHAE+H ARGFCL+N+VA+AA+ AR+ LG+SK+LICDWDVHHGQGTQ+MFWKD SVLYFSVHR+D+G F+PG+GSP+ VGEGEGEGYTINVAWN+GGMGD EYR+VW+++LLPVARAF PELILVSAGFDGA+GD MGGCE+T + GFG M + LV  V SA+GRVVLALEGGY+LS+LGECVEACL  L     G GG
Sbjct:    1 MAASGEIILERESPNTCAGGIEAATRNRCKIKLDAFTGPPACPRVLHISPSVATSTTKAPAS--QLDAAEKCANPPALHRLHLLP----DRPTIRSCQTGIKRPRSPSSGHIQDVWASVTSGAPVKSSNL--ETGLYYDAIHRLHYHPDRKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQ---------LLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVG-------STRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKHAREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPGSGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEALTGPSEGGGG 512
The following BLAST results are available for this feature:
BLAST of NO03G04700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29907.12.400e-13952.61histone deacetylase 6 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04700NO03G04700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04700.1NO03G04700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04700.1.cds1NO03G04700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04700.1 ID=NO03G04700.1|Name=NO03G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2059bp
AATGAGGTGGGCTGTGCTTGCGTGAGGATGACAGTGTCTTGGGAGATAAT
TGTTGAGCGTGATGGCAAGAACAGCAATAGCACTAACCGCAGTACCAGCA
GCACGGACCTCGCTGACCTCCTTCACCTGCCCGCCTGCCCACGCTTGCTG
GGGGTCGCAAACGCCACGGCTTTAGCTGCGACACAGACTATGACTACAGT
ACACAATCACGATGTGGAAGAGAACAAGGCTGAGACGCCATCCTCTTCTT
TCGTGCGGCTGCTCTCCTCTTCTCTCGTGGAGGAGCCAGTAGACCGGTCG
CTCCACTTAGGGGCCAAGCGACCTCGCGCCACCGAGACCATTGCTCAGCC
CCATTTCGCACCCGCAGTAACAACAAAAGCGAGCTTTAAATTTTGCCGTC
CCCTTGGCGGTACTGGGTTGTATTACGACGCAGTGCACCAGCGACATCAC
CACCCTGGACGAAAGCACCCCGAGCGGCCTGAGCGAGTGGAAGCCATCAT
GTCGCACCTTGCCTGTCAGGGCCTCCTCGACAAACTCACTCTGCTACAAA
GTGCAGATAGAGCTTGCTATGATAGCTTGGAAAGCGTACACAGTACATAC
TACCTGCAAAGACTCCGAAGATTGGAAGCTCTCTCATCTACTATTTCTGA
CACCGACAATGAAGGGAGGGGCGATGAGAAGTTCAAAGAAAAGATGGGCG
GTGTCATGGCACGCCTCCAGGAAGAAGCAGCACAGTTCGACTCTGTCTAC
CTGAACGAATCCACGATTGAATGTGCACGGAAAGCAGCGGGTGGATTAAT
GCTCTTGGTGGAAGCTGTCATGACTTCGCGATCGAGACAGTTATCTTTTT
CTACAAGTGCAGGGAGCCAAGAAGGTATCTTATCACCACCAAGACTCTCC
TTGGCCGAAAGTAGCAATTGTAACGTCAGTAGTACTTCCATTATTACATC
AAGAAGCAGCACCACTTCTCACTCTCTGCCACCCCTTCGTAACGGCCTCG
CCCTGATTCGTCCCCCCGGGCATCATGCGGAAGCGCACCATGCCCGTGGC
TTCTGTCTTCTTAATAATGTCGCGATCGCCGCTCAATTTGCCCGACAAAG
GCTAGGTGTCAGCAAAATCTTGATATGTGACTGGGACGTGCATCATGGGC
AGGGTACCCAGCAGATGTTCTGGAAGGATAAGTCTGTGCTATATTTCTCT
GTGCATAGGTATGACAATGGAAGCTTTTTTCCGGGCACGGGCTCACCGAA
AGGGGTAGGAGAGGGGGAGGGAGAGGGTTACACAATAAATGTGGCATGGA
ATGAGGGAGGGATGGGGGACAGGGAGTACAGGGAGGTCTGGAGGAGGGTA
TTATTGCCGGTAGCGAGGGCATTTGAGCCGGAGTTGATTTTGGTGTCGGC
GGGGTTCGACGGGGCAAAAGGGGATGGAATGGGGGGATGTGAGGTTACAG
GAAAGGGTGGATTTGGATGGATGACGCAACGGCTGGTGCGGGAGGTAGAG
AGCGCGCAGGGAAGGGTGGTGTTGGCCCTGGAGGGAGGTTACAAATTGAG
TGTGTTGGGGGAGTGCGTGGAGGCTTGTTTGGGAGGTTTGATGGAGAAGG
AAGGAGGAGAAGGTGGGGATGAGGAGACGAACGAGGATACTGAAGAGGAA
GAGATTAGAGAGGAGGCGACAGAGGCGATTGCGAGGACGATTGCGGTGCA
CAGGAAGTACTGGCCATGTTTGGGTGGGGGGCTTGGTGATGACGGTCACG
GGAAGGAGGGAGAGGAGGTGAAGAGTAGTAAAAGTGTATAAGGCGAGTAA
CGGTTGTGTAGCCCTTGCTATTTTCAAACGGTAAGGTAGGTAATATTTTA
AACGGTACGGTAGGTGTATATGCTTCCACGCATCTCGAGAGAGAAAGAAA
ATTGATAGGACTGTGTGGCTTGTTGGAGCGTTTGTCGGCTTTTCATACAC
TCATTATCTTGGCGTTAGTAAGAGTAACGCTTGGGTGCGTGTGTAAATGA
CAATGTAAAAATTTAAAGAGAAAGGAAAATAAAGATAAAATATGACTGGC
GAGGCGTTT
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protein sequence of NO03G04700.1

>NO03G04700.1-protein ID=NO03G04700.1-protein|Name=NO03G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MTVSWEIIVERDGKNSNSTNRSTSSTDLADLLHLPACPRLLGVANATALA
ATQTMTTVHNHDVEENKAETPSSSFVRLLSSSLVEEPVDRSLHLGAKRPR
ATETIAQPHFAPAVTTKASFKFCRPLGGTGLYYDAVHQRHHHPGRKHPER
PERVEAIMSHLACQGLLDKLTLLQSADRACYDSLESVHSTYYLQRLRRLE
ALSSTISDTDNEGRGDEKFKEKMGGVMARLQEEAAQFDSVYLNESTIECA
RKAAGGLMLLVEAVMTSRSRQLSFSTSAGSQEGILSPPRLSLAESSNCNV
SSTSIITSRSSTTSHSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAI
AAQFARQRLGVSKILICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSF
FPGTGSPKGVGEGEGEGYTINVAWNEGGMGDREYREVWRRVLLPVARAFE
PELILVSAGFDGAKGDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLA
LEGGYKLSVLGECVEACLGGLMEKEGGEGGDEETNEDTEEEEIREEATEA
IARTIAVHRKYWPCLGGGLGDDGHGKEGEEVKSSKSV*
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mRNA from alignment at chr3:1340638..1342878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04700.1 ID=NO03G04700.1|Name=NO03G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr3:1340638..1342878- (Nannochloropsis oceanica)
AATGAGGTACGTGCCCGACACAAAATACGTGACAATCGAAAGCGATACAT
ATATATGAGCGTTGAGCGAGCCGTTGAGGTGCATCCGAGACGTGGTCGCT
TCGCATGCCCCGATCCTTCCTCACGGCCGTGCCAAATATAGCCCCATTTA
GGCTCTGACCCAATCAATCTTTTCCACAATCAACGCAGGTGGGCTGTGCT
TGCGTGAGGATGACAGTGTCTTGGGAGATAATTGTTGAGCGTGATGGCAA
GAACAGCAATAGCACTAACCGCAGTACCAGCAGCACGGACCTCGCTGACC
TCCTTCACCTGCCCGCCTGCCCACGCTTGCTGGGGGTCGCAAACGCCACG
GCTTTAGCTGCGACACAGACTATGACTACAGTACACAATCACGATGTGGA
AGAGAACAAGGCTGAGACGCCATCCTCTTCTTTCGTGCGGCTGCTCTCCT
CTTCTCTCGTGGAGGAGCCAGTAGACCGGTCGCTCCACTTAGGGGCCAAG
CGACCTCGCGCCACCGAGACCATTGCTCAGCCCCATTTCGCACCCGCAGT
AACAACAAAAGCGAGCTTTAAATTTTGCCGTCCCCTTGGCGGTACTGGGT
TGTATTACGACGCAGTGCACCAGCGACATCACCACCCTGGACGAAAGCAC
CCCGAGCGGCCTGAGCGAGTGGAAGCCATCATGTCGCACCTTGCCTGTCA
GGGCCTCCTCGACAAACTCACTCTGCTACAAAGTGCAGATAGAGCTTGCT
ATGATAGCTTGGAAAGCGTACACAGTACATACTACCTGCAAAGACTCCGA
AGATTGGAAGCTCTCTCATCTACTATTTCTGACACCGACAATGAAGGGAG
GGGCGATGAGAAGTTCAAAGAAAAGATGGGCGGTGTCATGGCACGCCTCC
AGGAAGAAGCAGCACAGTTCGACTCTGTCTACCTGAACGAATCCACGATT
GAATGTGCACGGAAAGCAGCGGGTGGATTAATGCTCTTGGTGGAAGCTGT
CATGACTTCGCGATCGAGACAGTTATCTTTTTCTACAAGTGCAGGGAGCC
AAGAAGGTATCTTATCACCACCAAGACTCTCCTTGGCCGAAAGTAGCAAT
TGTAACGTCAGTAGTACTTCCATTATTACATCAAGAAGCAGCACCACTTC
TCACTCTCTGCCACCCCTTCGTAACGGCCTCGCCCTGATTCGTCCCCCCG
GGCATCATGCGGAAGCGCACCATGCCCGTGGCTTCTGTCTTCTTAATAAT
GTCGCGATCGCCGCTCAATTTGCCCGACAAAGGCTAGGTGTCAGCAAAAT
CTTGATATGTGACTGGGACGTGCATCATGGGCAGGGTACCCAGCAGATGT
TCTGGAAGGATAAGTCTGTGCTATATTTCTCTGTGCATAGGTATGACAAT
GGAAGCTTTTTTCCGGGCACGGGCTCACCGAAAGGGGTAGGAGAGGGGGA
GGGAGAGGGTTACACAATAAATGTGGCATGGAATGAGGGAGGGATGGGGG
ACAGGGAGTACAGGGAGGTCTGGAGGAGGGTATTATTGCCGGTAGCGAGG
GCATTTGAGCCGGAGTTGATTTTGGTGTCGGCGGGGTTCGACGGGGCAAA
AGGGGATGGAATGGGGGGATGTGAGGTTACAGGAAAGGGTGGATTTGGAT
GGATGACGCAACGGCTGGTGCGGGAGGTAGAGAGCGCGCAGGGAAGGGTG
GTGTTGGCCCTGGAGGGAGGTTACAAATTGAGTGTGTTGGGGGAGTGCGT
GGAGGCTTGTTTGGGAGGTTTGATGGAGAAGGAAGGAGGAGAAGGTGGGG
ATGAGGAGACGAACGAGGATACTGAAGAGGAAGAGATTAGAGAGGAGGCG
ACAGAGGCGATTGCGAGGACGATTGCGGTGCACAGGAAGTACTGGCCATG
TTTGGGTGGGGGGCTTGGTGATGACGGTCACGGGAAGGAGGGAGAGGAGG
TGAAGAGTAGTAAAAGTGTATAAGGCGAGTAACGGTTGTGTAGCCCTTGC
TATTTTCAAACGGTAAGGTAGGTAATATTTTAAACGGTACGGTAGGTGTA
TATGCTTCCACGCATCTCGAGAGAGAAAGAAAATTGATAGGACTGTGTGG
CTTGTTGGAGCGTTTGTCGGCTTTTCATACACTCATTATCTTGGCGTTAG
TAAGAGTAACGCTTGGGTGCGTGTGTAAATGACAATGTAAAAATTTAAAG
AGAAAGGAAAATAAAGATAAAATATGACTGGCGAGGCGTTT
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Coding sequence (CDS) from alignment at chr3:1340638..1342878-

>NO03G04700.1 ID=NO03G04700.1|Name=NO03G04700.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr3:1340638..1342878- (Nannochloropsis oceanica)
ATGACAGTGTCTTGGGAGATAATTGTTGAGCGTGATGGCAAGAACAGCAA
TAGCACTAACCGCAGTACCAGCAGCACGGACCTCGCTGACCTCCTTCACC
TGCCCGCCTGCCCACGCTTGCTGGGGGTCGCAAACGCCACGGCTTTAGCT
GCGACACAGACTATGACTACAGTACACAATCACGATGTGGAAGAGAACAA
GGCTGAGACGCCATCCTCTTCTTTCGTGCGGCTGCTCTCCTCTTCTCTCG
TGGAGGAGCCAGTAGACCGGTCGCTCCACTTAGGGGCCAAGCGACCTCGC
GCCACCGAGACCATTGCTCAGCCCCATTTCGCACCCGCAGTAACAACAAA
AGCGAGCTTTAAATTTTGCCGTCCCCTTGGCGGTACTGGGTTGTATTACG
ACGCAGTGCACCAGCGACATCACCACCCTGGACGAAAGCACCCCGAGCGG
CCTGAGCGAGTGGAAGCCATCATGTCGCACCTTGCCTGTCAGGGCCTCCT
CGACAAACTCACTCTGCTACAAAGTGCAGATAGAGCTTGCTATGATAGCT
TGGAAAGCGTACACAGTACATACTACCTGCAAAGACTCCGAAGATTGGAA
GCTCTCTCATCTACTATTTCTGACACCGACAATGAAGGGAGGGGCGATGA
GAAGTTCAAAGAAAAGATGGGCGGTGTCATGGCACGCCTCCAGGAAGAAG
CAGCACAGTTCGACTCTGTCTACCTGAACGAATCCACGATTGAATGTGCA
CGGAAAGCAGCGGGTGGATTAATGCTCTTGGTGGAAGCTGTCATGACTTC
GCGATCGAGACAGTTATCTTTTTCTACAAGTGCAGGGAGCCAAGAAGGTA
TCTTATCACCACCAAGACTCTCCTTGGCCGAAAGTAGCAATTGTAACGTC
AGTAGTACTTCCATTATTACATCAAGAAGCAGCACCACTTCTCACTCTCT
GCCACCCCTTCGTAACGGCCTCGCCCTGATTCGTCCCCCCGGGCATCATG
CGGAAGCGCACCATGCCCGTGGCTTCTGTCTTCTTAATAATGTCGCGATC
GCCGCTCAATTTGCCCGACAAAGGCTAGGTGTCAGCAAAATCTTGATATG
TGACTGGGACGTGCATCATGGGCAGGGTACCCAGCAGATGTTCTGGAAGG
ATAAGTCTGTGCTATATTTCTCTGTGCATAGGTATGACAATGGAAGCTTT
TTTCCGGGCACGGGCTCACCGAAAGGGGTAGGAGAGGGGGAGGGAGAGGG
TTACACAATAAATGTGGCATGGAATGAGGGAGGGATGGGGGACAGGGAGT
ACAGGGAGGTCTGGAGGAGGGTATTATTGCCGGTAGCGAGGGCATTTGAG
CCGGAGTTGATTTTGGTGTCGGCGGGGTTCGACGGGGCAAAAGGGGATGG
AATGGGGGGATGTGAGGTTACAGGAAAGGGTGGATTTGGATGGATGACGC
AACGGCTGGTGCGGGAGGTAGAGAGCGCGCAGGGAAGGGTGGTGTTGGCC
CTGGAGGGAGGTTACAAATTGAGTGTGTTGGGGGAGTGCGTGGAGGCTTG
TTTGGGAGGTTTGATGGAGAAGGAAGGAGGAGAAGGTGGGGATGAGGAGA
CGAACGAGGATACTGAAGAGGAAGAGATTAGAGAGGAGGCGACAGAGGCG
ATTGCGAGGACGATTGCGGTGCACAGGAAGTACTGGCCATGTTTGGGTGG
GGGGCTTGGTGATGACGGTCACGGGAAGGAGGGAGAGGAGGTGAAGAGTA
GTAAAAGTGTATAA
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Synonyms
Publications