NO03G04540, NO03G04540 (gene) Nannochloropsis oceanica

Overview
NameNO03G04540
Unique NameNO03G04540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1575
Alignment locationchr3:1305559..1307133 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA primase large subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1305559..1307133 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003896DNA primase activity
GO:0016740transferase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006269DNA replication, synthesis of RNA primer
GO:0009058biosynthetic process
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR007238DNA_primase_lsu_euk/arc
Homology
BLAST of NO03G04540 vs. NCBI_GenBank
Match: ETM43079.1 (hypothetical protein L914_11371 [Phytophthora parasitica])

HSP 1 Score: 394.8 bits (1013), Expect = 4.100e-106
Identity = 202/464 (43.53%), Postives = 306/464 (65.95%), Query Frame = 0
Query:   16 RVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQG-------TVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            +V R    +LSLYN AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + + +LE+ ++  +P+            ++  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+ +FM+Q+GL+Y+  + +++   +++L+ V   +     G+           +F++PFT+ALDLVA R+V++EAG AYVP E +VSI+ A FR++LS+ L  AF   +   +  D R+AP+++N+AK +   D+S T    S + +  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DAI +W++EF K M+ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RH+++ +L + L+  GV   +++E+L L++  HYQ+AC K+FE +H G++     D + NHPN +F  S  YY  K  G
Sbjct:   12 QVPRHGLSMLSLYNEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSVQMKDREGRLEKTLSKHMPLRSAAPRRTGQAEDDAAKDVLSHFFLRMAFCQTEELRRWFLTQESTLFRYRLDKLTREEKIQFMKQNGLSYEEATMKEIEARQSKLKVVRDANDPKVRGK-------PLPAYFKVPFTEALDLVATRRVYIEAGTAYVPFEHVVSILFAAFRANLSKELSGAFRKYNRSLISKDERLAPVLSNLAKHHIDADYSSTPVPGSENAIRPDMIDGLAATSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAIAYWKQEFCKKMSVDDFNKKYAYNIRHNYGKEGKRKDYAPSNCMRIITGDPPKNGEYHGCPFRHFEQEHLRKALQ--GVSEGDKQEILSLAENHHYQIACKKYFEATHPGSDP----DVLINHPNGYFEESRKYYAAKEKG 462          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: KUF83281.1 (DNA primase large subunit [Phytophthora nicotianae])

HSP 1 Score: 394.0 bits (1011), Expect = 7.000e-106
Identity = 202/464 (43.53%), Postives = 305/464 (65.73%), Query Frame = 0
Query:   16 RVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQG-------TVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            +V R    +LSLYN AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + + +LE+ +   +P+            ++  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+ +FM+Q+GL+Y+  + +++   +++L+ V   +     G+           +F++PFT+ALDLVA R+V++EAG AYVP E +VSI+ A FR++LS+ L  AF   +   +  D R+AP+++N+AK +   D+S T    S + +  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DAI +W++EF K M+ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RH+++ +L + L+  GV   +++E+L L++  HYQ+AC K+FE +H G++     D + NHPN +F  S  YY  K  G
Sbjct:   12 QVPRHXLSMLSLYNEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSVQMKDREGRLEKTLNKHMPLRSAAPRRTGQAEDDAAKDVLSHFFLRMAFCQTEELRRWFLTQESTLFRYRLDKLTREEKIQFMKQNGLSYEEATMKEIEARQSKLKVVRDANDPKVRGK-------PLPAYFKVPFTEALDLVATRRVYIEAGTAYVPFEHVVSILFAAFRANLSKELSGAFRKYNRSLISKDERLAPVLSNLAKHHIDADYSSTPVPGSENAIRPDMIDGLAATSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAIAYWKQEFCKKMSVDDFNKKYAYNIRHNYGKEGKRKDYAPSNCMRIITGDPPKNGEYHGCPFRHFEQEHLRKALQ--GVSEGDKQEILSLAENHHYQIACKKYFEATHPGSDP----DVLINHPNGYFEESRKYYAAKEKG 462          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: ETK83198.1 (hypothetical protein L915_11537 [Phytophthora parasitica] >ETL89807.1 hypothetical protein L917_11321 [Phytophthora parasitica] >ETO71801.1 hypothetical protein F444_11919 [Phytophthora parasitica P1976] >ETP12898.1 hypothetical protein F441_11791 [Phytophthora parasitica CJ01A1] >ETP41011.1 hypothetical protein F442_11745 [Phytophthora parasitica P10297])

HSP 1 Score: 393.7 bits (1010), Expect = 9.200e-106
Identity = 202/464 (43.53%), Postives = 305/464 (65.73%), Query Frame = 0
Query:   16 RVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQG-------TVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            +V R    +LSLYN AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + + +LE+ +   +P+            ++  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+ +FM+Q+GL+Y+  + +++   +++L+ V   +     G+           +F++PFT+ALDLVA R+V++EAG AYVP E +VSI+ A FR++LS+ L  AF   +   +  D R+AP+++N+AK +   D+S T    S + +  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DAI +W++EF K M+ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RH+++ +L + L+  GV   +++E+L L++  HYQ+AC K+FE +H G++     D + NHPN +F  S  YY  K  G
Sbjct:   12 QVPRHGLSMLSLYNEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSVQMKDREGRLEKTLNKHMPLRSAAPRRTGQAEDDAAKDVLSHFFLRMAFCQTEELRRWFLTQESTLFRYRLDKLTREEKIQFMKQNGLSYEEATMKEIEARQSKLKVVRDANDPKVRGK-------PLPAYFKVPFTEALDLVATRRVYIEAGTAYVPFEHVVSILFAAFRANLSKELSGAFRKYNRSLISKDERLAPVLSNLAKHHIDADYSSTPVPGSENAIRPDMIDGLAATSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAIAYWKQEFCKKMSVDDFNKKYAYNIRHNYGKEGKRKDYAPSNCMRIITGDPPKNGEYHGCPFRHFEQEHLRKALQ--GVSEGDKQEILSLAENHHYQIACKKYFEATHPGSDP----DVLINHPNGYFEESRKYYAAKEKG 462          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: XP_024572980.1 (dna primase [Plasmopara halstedii] >CEG36611.1 dna primase [Plasmopara halstedii])

HSP 1 Score: 393.7 bits (1010), Expect = 9.200e-106
Identity = 204/456 (44.74%), Postives = 304/456 (66.67%), Query Frame = 0
Query:   24 LLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQ------GTVE-EVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            +LS Y  AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + +++LE+ +   +P+        G  E +  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+ +FM+Q+GL+Y+  + +++   +++L+AV         GQ           +F++PFT+ALDLVA R+V+LEAG AYV  E +VSI+ A FR++LSR L  AF   S   +  D R+AP+++N+AK +   D+S T    SG+T+  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DA+ FW++EF K ++ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RH+++ +L + L+  G+   +++E+L L++  HYQ+AC K+FE +H+G++     D + NHPN +F  S  YY  K  G
Sbjct:   20 MLSFYKEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSMQMKDREIRLEKTLNKYMPLRSTASRRTGQAEDDTTKDVLSHFFLRMAFCQTEELRRWFLTQESALFRYRLDKLTREEKIQFMKQNGLSYEEATLKEIEVRQSKLKAVRDAYDLKVRGQ-------PLPAYFKVPFTEALDLVASRRVYLEAGTAYVSFEHVVSILFAAFRTNLSRELSGAFRKYSRSLISKDERLAPVLSNLAKHHIDADYSVTPVPGSGNTIRPDMIDTLAVTSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAVAFWKQEFCKKISVDDFNKKYAYNIRHNYGKEGKRKDYAPPNCMRIITGDPPKTGEYHGCPFRHFEQEHLRKALQ--GISEGDKQEILLLAENHHYQIACKKYFEATHEGSDP----DVLINHPNGYFEESRKYYAAKEKG 462          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: XP_002898105.1 (DNA primase, putative [Phytophthora infestans T30-4] >EEY63518.1 DNA primase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 392.5 bits (1007), Expect = 2.100e-105
Identity = 202/464 (43.53%), Postives = 306/464 (65.95%), Query Frame = 0
Query:   16 RVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTV-------EEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            ++ R    +LSLYN AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + + +LE+ +   +P+            ++  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+ +FM+Q+GL+Y+  + +++   +++L+AV   +     GQ           +F++PFT+ALDLVA R+V++EAG A+VP E +VSI+ A FR++LS+ L  AF   +   V  D R+AP+++N+AK +   D+S T    S + +  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DAI +W++EF K M+ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RH+++ +L + L+  GV   +++E+L L++  HYQ+AC K+FE +H G++     D + NHPN ++  S  YY  K  G
Sbjct:   12 QLPRHGLSMLSLYNEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSVQMKDREGRLEKTLNKHMPLRSAAPRRTGQADDDTAKDVLSHFFLRMAFCQTEELRRWFLTQESTLFRYRLDKLTREEKIQFMKQNGLSYEEATMKEIEARQSKLKAVRDSNDFKVRGQ-------PLPAYFKVPFTEALDLVATRRVYIEAGTAFVPFEHVVSILFAAFRANLSKELSGAFRKYNRSLVSKDERLAPVLSNLAKHHIDADYSSTPVPGSENAIRPDMIDGLAATSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAIAYWKQEFCKKMSVDDFNKKYAYNIRHNYGKEGKRKDYAPSNCMRIITGDPPKNGEYHGCPFRHFEQEHLRKALQ--GVSEGDKQEILSLAENHHYQIACKKYFEATHPGSDP----DVLINHPNGYYEESRKYYATKEKG 462          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: ETL36592.1 (hypothetical protein L916_11453 [Phytophthora parasitica])

HSP 1 Score: 392.1 bits (1006), Expect = 2.700e-105
Identity = 201/464 (43.32%), Postives = 304/464 (65.52%), Query Frame = 0
Query:   16 RVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQG-------TVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            +V R    +LSLYN AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + + +LE+ +   +P+            ++  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+ +FM+Q+GL+Y+  + +++   +++L+ V   +     G+           +F++PFT+ALDLVA R+V++E G AYVP E +VSI+ A FR++LS+ L  AF   +   +  D R+AP+++N+AK +   D+S T    S + +  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DAI +W++EF K M+ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RH+++ +L + L+  GV   +++E+L L++  HYQ+AC K+FE +H G++     D + NHPN +F  S  YY  K  G
Sbjct:   12 QVPRHGLSMLSLYNEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSVQMKDREGRLEKTLNKHMPLRSAAPRRTGQAEDDAAKDVLSHFFLRMAFCQTEELRRWFLTQESTLFRYRLDKLTREEKIQFMKQNGLSYEEATMKEIEARQSKLKVVRDANDPKVRGK-------PLPAYFKVPFTEALDLVATRRVYIEVGTAYVPFEHVVSILFAAFRANLSKELSGAFRKYNRSLISKDERLAPVLSNLAKHHIDADYSSTPVPGSENAIRPDMIDGLAATSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAIAYWKQEFCKKMSVDDFNKKYAYNIRHNYGKEGKRKDYAPSNCMRIITGDPPKNGEYHGCPFRHFEQEHLRKALQ--GVSEGDKQEILSLAENHHYQIACKKYFEATHPGSDP----DVLINHPNGYFEESRKYYAAKEKG 462          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: OQS07199.1 (DNA primase [Thraustotheca clavata])

HSP 1 Score: 391.7 bits (1005), Expect = 3.500e-105
Identity = 205/435 (47.13%), Postives = 287/435 (65.98%), Query Frame = 0
Query:   25 LSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLA--DGRIAPLVNNMAKQYTGKDFSET--KSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFE-VSHKGAESVISLDGVGNHPNAFF 455
            LS+Y   P  E+TLEEFE Y++DRLQ+L+T+E +RLRG        K+E+ MA  LP+   T E+  KD++SHFILR+A C +E+LRRWFL  ES LF+ RL++    E+  FM+++ L YD V  E+   LK QL AV + + +    +  +  +V    + ++PFT+A+DL+  R+VFL+ G AYVP + LV+I+ ARFRS+LS+ L  AF       A  D R+ P++ N+AK + G D+      SG+ +    +D LA  +MPLCM+ LH  ++++  LKH GR+QYGLFLKG+G+ M+DAI FW   F K M  D FNK+YAY+IRH +GKEG+RKDYTPFNC KII G  P  GEYHGCP+RH+DE +L   L   G+   ++E ++ L++ + YQLAC +HFE +  KG     ++D VGNHPNAFF
Sbjct:   23 LSMYQEPPNVEVTLEEFESYSIDRLQMLKTLELVRLRG----RDDAKVEKAMAKFLPLR--TAEDREKDEISHFILRMAFCHSEELRRWFLTQESSLFKHRLDQASRDEKMNFMKKNRLVYDQVDTEEFAELKQQLTAVHL-ANKTSVKEALNMPDV----YVKVPFTEAIDLIGQRKVFLKCGVAYVPFDHLVTILFARFRSTLSKQLAIAFRKFNGSAAARDDRLLPVLKNLAKHHIGPDYGTVPQASGNAITPEMIDGLAATAMPLCMKTLHNAMKTQSHLKHGGRMQYGLFLKGIGLQMDDAITFWRNVFCKKMNVDEFNKKYAYNIRHNYGKEGKRKDYTPFNCVKIITGDPPKAGEYHGCPFRHFDEHHLRASLR--GINEIDKESIITLARNKDYQLACRRHFEALFPKG-----NIDAVGNHPNAFF 439          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: ETI43107.1 (hypothetical protein F443_11832 [Phytophthora parasitica P1569])

HSP 1 Score: 391.3 bits (1004), Expect = 4.600e-105
Identity = 201/464 (43.32%), Postives = 305/464 (65.73%), Query Frame = 0
Query:   16 RVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPM-------SQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            +V R    +LSLYN AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + + +LE+ +   +P+       +    ++  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+ +FM+Q+GL+Y+  + +++   +++L+ V   +     G+           +F++PFT+ALDLVA R+V++E G AYVP E +VSI+ A FR++LS+ L  AF   +   +  D R+AP+++N+AK +   D+S T    S + +  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DAI +W++EF K M+ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RH+++ +L + L+  GV   +++E+L L++  HYQ+AC K+FE +H G++     D + NHPN +F  S  YY  K  G
Sbjct:   12 QVPRHGLSMLSLYNEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSVQMKDREGRLEKTLNKHMPLRLAAPRRTGQAEDDAAKDVLSHFFLRMAFCQTEELRRWFLTQESTLFRYRLDKLTREEKIQFMKQNGLSYEEATMKEIEARQSKLKVVRDANDPKVRGK-------PLPAYFKVPFTEALDLVATRRVYIEVGTAYVPFEHVVSILFAAFRANLSKELSGAFRKYNRSLISKDERLAPVLSNLAKHHIDADYSSTPVPGSENAIRPDMIDGLAATSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAIAYWKQEFCKKMSVDDFNKKYAYNIRHNYGKEGKRKDYAPSNCMRIITGDPPKNGEYHGCPFRHFEQEHLRKALQ--GVSEGDKQEILSLAENHHYQIACKKYFEATHPGSDP----DVLINHPNGYFEESRKYYAAKEKG 462          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: CCI41265.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 383.6 bits (984), Expect = 9.500e-103
Identity = 197/462 (42.64%), Postives = 294/462 (63.64%), Query Frame = 0
Query:   22 TKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGT-------VEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRT-----QFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDF-----SETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEK 465
            T +LS+Y + P  E+TLEEFE +A++RL  L+ +E+ RL  I   E + +LE+V+   LP+   +        E++L D +SH+ LRIA C+TE+LRRWF++ ES LFR+RL+ +   E+  FM+++G+ +D VS  ++  +K +L AV          +   T++          +F++PFTQ LDLV  R+V++E G AYVP +++VSI+  RFR+SLS+ L  A+   +   +  DGR+ P++NN+AK +   D+     S   SG+ V    +D  +  SMPLCMR LHK L ++H L+  GR QYGLFLKG G+ +EDAI FW + F K MT D FNK YAY+IRH +GKEG+RKDY P++C  II G  P  GE+HGCP+RH+++  L + L+  GV   E++E+L+L +G+H+Q+AC ++FE+ H G    +++    NHPN +F  S  YY EK
Sbjct:   22 TCMLSMYESPPSVEVTLEEFEQFAINRLHALKAVENFRLGSINVKEKEQRLEKVLLKYLPLRNSSPGDLERAQEDMLADVLSHYFLRIAFCQTEELRRWFIQQESVLFRYRLDNMIRAEKLLFMKKNGIIFDEVSVSEIEMIKEKLTAV----------RNSFTLDRKERLRPLGSYFKVPFTQVLDLVGARKVYIEKGSAYVPFDQVVSILATRFRASLSKALAQAYRKYTRSMISRDGRLIPILNNLAKHHIDADYTIQSSSVFSSGEKVTPEAIDAFSRTSMPLCMRSLHKALLTDHHLRFAGRQQYGLFLKGTGLQLEDAIAFWRQHFCKRMTVDEFNKTYAYNIRHNYGKEGKRKDYVPYSCMSIITGNPPKSGEHHGCPFRHFEKDRLRKSLQ--GVKEHEKDEILRLVQGRHFQVACKRYFELQHPGYNGDLAV----NHPNKYFEESRRYYIEK 467          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: CCI41266.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 383.3 bits (983), Expect = 1.200e-102
Identity = 196/460 (42.61%), Postives = 293/460 (63.70%), Query Frame = 0
Query:   24 LLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGT-------VEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRT-----QFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDF-----SETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEK 465
            +LS+Y + P  E+TLEEFE +A++RL  L+ +E+ RL  I   E + +LE+V+   LP+   +        E++L D +SH+ LRIA C+TE+LRRWF++ ES LFR+RL+ +   E+  FM+++G+ +D VS  ++  +K +L AV          +   T++          +F++PFTQ LDLV  R+V++E G AYVP +++VSI+  RFR+SLS+ L  A+   +   +  DGR+ P++NN+AK +   D+     S   SG+ V    +D  +  SMPLCMR LHK L ++H L+  GR QYGLFLKG G+ +EDAI FW + F K MT D FNK YAY+IRH +GKEG+RKDY P++C  II G  P  GE+HGCP+RH+++  L + L+  GV   E++E+L+L +G+H+Q+AC ++FE+ H G    +++    NHPN +F  S  YY EK
Sbjct:    1 MLSMYESPPSVEVTLEEFEQFAINRLHALKAVENFRLGSINVKEKEQRLEKVLLKYLPLRNSSPGDLERAQEDMLADVLSHYFLRIAFCQTEELRRWFIQQESVLFRYRLDNMIRAEKLLFMKKNGIIFDEVSVSEIEMIKEKLTAV----------RNSFTLDRKERLRPLGSYFKVPFTQVLDLVGARKVYIEKGSAYVPFDQVVSILATRFRASLSKALAQAYRKYTRSMISRDGRLIPILNNLAKHHIDADYTIQSSSVFSSGEKVTPEAIDAFSRTSMPLCMRSLHKALLTDHHLRFAGRQQYGLFLKGTGLQLEDAIAFWRQHFCKRMTVDEFNKTYAYNIRHNYGKEGKRKDYVPYSCMSIITGNPPKSGEHHGCPFRHFEKDRLRKSLQ--GVKEHEKDEILRLVQGRHFQVACKRYFELQHPGYNGDLAV----NHPNKYFEESRRYYIEK 444          
The following BLAST results are available for this feature:
BLAST of NO03G04540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETM43079.14.100e-10643.53hypothetical protein L914_11371 [Phytophthora para... [more]
KUF83281.17.000e-10643.53DNA primase large subunit [Phytophthora nicotianae... [more]
ETK83198.19.200e-10643.53hypothetical protein L915_11537 [Phytophthora para... [more]
XP_024572980.19.200e-10644.74dna primase [Plasmopara halstedii] >CEG36611.1 dna... [more]
XP_002898105.12.100e-10543.53DNA primase, putative [Phytophthora infestans T30-... [more]
ETL36592.12.700e-10543.32hypothetical protein L916_11453 [Phytophthora para... [more]
OQS07199.13.500e-10547.13DNA primase [Thraustotheca clavata][more]
ETI43107.14.600e-10543.32hypothetical protein F443_11832 [Phytophthora para... [more]
CCI41265.19.500e-10342.64unnamed protein product [Albugo candida][more]
CCI41266.11.200e-10242.61unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005433NSK005433Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04540.1NO03G04540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|13482gene_1658Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g42gene746Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04540.1NO03G04540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04540 ID=NO03G04540|Name=NO03G04540|organism=Nannochloropsis oceanica|type=gene|length=1575bp
ATGCAAACCACTACCCGTGCCATCCACGGGGAGCCCAGCTACACGCGGGT
CAAGCGCGAGCCGACCAAGCTCCTGAGCCTCTACAATACAGCTCCCGAGG
CTGAAATCACCCTGGAGGAATTTGAGCTATACGCGCTGGACCGCCTCCAA
GTGCTGCGGACGATTGAAAGCTTGCGGCTGCGTGGCATTAAGGGCGACGA
GTTTAAGATGAAGCTCGAAGAGGTTATGGCGACGTGCTTGCCCATGAGTC
AGGGCACGGTGGAGGAAGTCCTGAAAGACCAAGTCTCGCATTTCATTCTG
CGCATCGCCCACTGCAAGACGGAGGACCTGCGTCGATGGTTCCTAAAGCA
CGAGAGCGAACTGTTTCGCTTTCGGTTGGAGAGGTTGGATAGTGGGGAAC
GGGCGAAATTTATGGAGCAGAGTGGGTTGGCGTACGACATGGTCTCAAAG
GAGGACGTGTTGCGTCTCAAGGCCCAATTGCAGGCCGTCCCTATCTTTAG
CCAGCAGCCGGGGTATGGCCAGGGGGGCCATACTGTAGAAGTGACGAGGA
CGCAGTTCTTTCGGATCCCGTTCACACAGGCATTGGATTTGGTTGCGCAC
CGACAGGTTTTCTTGGAGGCGGGGTTTGCGTATGTACCTGTTGAGAGGTT
GGTCAGCATTATTGTGGCCAGGTTTCGTAGTTCCTTGTCGCGGGGCCTCT
TGGATGCATTTGGGTCGATGCCTTACGTGTTGGCGGACGGGAGGATTGCG
CCGTTGGTGAATAACATGGCGAAGCAGTACACGGGGAAGGACTTCTCGGA
GACCAAGAGTGGCGATACGGTGAATGTGAATGACTTGGACATGCTCGCCG
ACAGGTCCATGCCGTTGTGCATGCGTGTGCTGCACAAGAATCTCCGGTCG
GAGCATAAACTAAAGCATTGGGGGCGGTTGCAGTATGGCTTGTTCTTGAA
GGGGGTGGGGATAGGCATGGAAGATGCGATCCAATTCTGGGAGCGGGAGT
TCACGAAGATTATGACGACGGATGTATTCAACAAGCAGTACGCGTATTCG
ATTAGGCATTATTTTGGAAAGGAGGGAAGAAGGAAGGATTATACGCCGTT
CAATTGCTCTAAGATAATCTTGGGTGCGGGCCCGGGGGTGGGGGAGTATC
ATGGATGCCCTTACAGACATTACGATGAGGCGAACTTGAACCGACTATTG
GAGAGGAGTGGGGTGGGGGTTACAGAGAGGGAGGAGATGTTGAAGCTCTC
CAAGGGGCAGCATTATCAGTTGGCGTGCGCGAAGCACTTTGAAGTAAGTC
ATAAGGGGGCGGAGAGTGTGATCAGTCTTGATGGGGTCGGCAACCACCCA
AATGCATTTTTTGCGGCCAGCATGGCTTACTATAAGGAGAAAAATGGGGG
GGAAACGGGAGGGAAAAGGGGAGGGAAAGAGTCGTCGCAGTCACCGGCGG
GGTCGCAAGCATCGGGATTCACGGCGGGAGGGGAGGGAGGGGAAGGGGAC
GATAGAGGGACGCCGACGTCGCCAATGGCGGCGGCGATGGAGGTGGAGGC
GGGGAGTGGGCACCCGCCGGAGTGA
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protein sequence of NO03G04540.1

>NO03G04540.1-protein ID=NO03G04540.1-protein|Name=NO03G04540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MQTTTRAIHGEPSYTRVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQ
VLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFIL
RIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSK
EDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAH
RQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLADGRIA
PLVNNMAKQYTGKDFSETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRS
EHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYS
IRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLL
ERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHP
NAFFAASMAYYKEKNGGETGGKRGGKESSQSPAGSQASGFTAGGEGGEGD
DRGTPTSPMAAAMEVEAGSGHPPE*
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Synonyms
Publications