NO03G04210, NO03G04210 (gene) Nannochloropsis oceanica

Overview
NameNO03G04210
Unique NameNO03G04210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2007
Alignment locationchr3:1216512..1218518 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA helicase, DEAD-box type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1216512..1218518 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO03G04210 vs. NCBI_GenBank
Match: EWM29847.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 824.3 bits (2128), Expect = 2.500e-235
Identity = 441/552 (79.89%), Postives = 482/552 (87.32%), Query Frame = 0
Query:   19 NALPATSTXXXXXXXTWAIHSSTR-RGRRAPTSTSTLLLLAMPFLLASTLTRPACLVTAFVGRPQVLT-VARASTRARTAATFRMMGAFGGISSQPFSSPAITPKTPSGNSNDGNNNALDLAEFRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKRDKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGEISFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARKRDYESGGKLSGLSSGKVGS--SSKGNKHTKYVANGQKSASGR 567
            +ALP T+T       + AIH  +R R     T +   LLLAMP LL+   TR  C+V+AF  RP   + V+R   R+R     RMMGAFGGISSQPFS+PAI  KT S + ++  N A DLAEFRRLGLGEE LEGLR +GIK+PSVIQR+AIP ALKG+D+AFSA+TGSGKTLAYLLPIMQ LKWQEA EG  RQ+CRPRALILVPTRELVTQV+EV K+LSHV+KLSSCGLHGG+DFGVQRRRLGGMVD+VVASPGRLLQHYEKGHVFFSQVT+VVVDEMDTMLKDGFGPDLKRLMVPLE KSKR+K+QYLMATATLTPAVK+LM +EGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQ RQNGER MIFCNTV SCRA EHALRE+AL S CYHGDMRS+ERAAALEKFK+GE+SFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLD+LSARKRDYESGGKLSGLSSGK+G+  SSKGN+H KYVAN Q+SASGR
Sbjct:   17 SALPNTAT-----TASRAIHFQSRLRLAFRTTPSICALLLAMPLLLSPHWTRSVCVVSAFHLRPSTASKVSRGVGRSR--EVLRMMGAFGGISSQPFSTPAIPSKTTSRSGDE--NAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHAKYVANRQRSASGR 559          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: CBJ32858.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 460.7 bits (1184), Expect = 7.300e-126
Identity = 233/426 (54.69%), Postives = 316/426 (74.18%), Query Frame = 0
Query:  133 NALDLAEFRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQ--EG--YARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVP-LETKSKRDKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGEISFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARKRDYESGGKLSGLSSGKVGSSSKGNKHT 554
            + ++  +F  LGL +++++ +   G   PS IQR AIP  L G +I F+A+TGSGKTLAYL+P++Q+LK +EAQ  EG    RQ+ RPRA++LVPTREL  QV+EV K LS   K SSCG+ GG+D+G QR+RL G VD+VV +PGRLL+H+E G+ F S+   VVVDE+DTML  GF  D+++L  P L   ++RD  Q++  TATLT AV+KL+ ++G++ K R +++ D H +LP++RH+M+D KG DK+  L+D+  Q  ++ +R ++FCNTV SCRA E  LREV + ++ YHG++ SDER++ LE+FK G+  +LVCTDIASRGLDMP V+HVVMFDFPLNPI+YLHRSGRTARMGAKG+VTSLL KRD VLA+A++ AV  GLPLD LS+R+ DY +GGKL  L   K   S KG+ H+
Sbjct:   13 DVIEEMDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGKTLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTMLTQGFAADIEKLNRPLLANPNRRDMAQFIFVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHTLPSLRHVMIDIKGRDKMSALIDIAQQHLKDFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPLFGRKGKVSVKGSHHS 438          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: CEM06502.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 387.5 bits (994), Expect = 7.900e-104
Identity = 202/420 (48.10%), Postives = 286/420 (68.10%), Query Frame = 0
Query:  137 LAEFRRLGLGEEVLEGLRAM-GIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKRDKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVV------------SQSRQNGE----RVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGEISFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARKRDYESGGKLSGLS 540
            + ++RRLGL E +  G  +M G  +P+ IQR+AIP  L G +I F+A TGSGKTLAYLLP+MQ LK +E      R+  RPRALIL PTREL  QV+EV +  S + KLSSC + GGD F  Q+R L  ++DVVV +PGR+L H++K ++  S+V+ VV+DE+DTML  GFGPD+ +L+ PL T+   ++ Q + ATATLT AV++L+ D+ + P  R++++   HKSLP +R+ M+DTKG DK+  L +++               R  GE      ++FCNTV SCRA +HA++E   +S+ YHG++  ++R A LE F+ G++ +LVCTD+A+RGLD+  V+ VVMFDFPLNPI+++HR+GRT     KG V  LL +RD+VLA+ VQ A+  G PL  LS+ ++DYE GG+L  LS
Sbjct:  843 MLKWRRLGLEESIARGTASMLGDVEPTAIQRLAIPQVLSGGNIVFAAETGSGKTLAYLLPMMQHLKSEELDGRSLRRPKRPRALILSPTRELSQQVLEVLRGSSQLAKLSSCSVIGGDSFAKQKRDLSKILDVVVGTPGRVLFHWDKSNLALSEVSYVVIDEVDTMLMQGFGPDINKLLQPLITRPDTEQPQLVFATATLTKAVRRLL-DQEDLPAVRYVEAPGLHKSLPNVRYEMIDTKGEDKLDALRELLKVRGPQRPAEGGDGQRGAGEVYRKSTLVFCNTVNSCRACQHAIQEAGFTSLAYHGEVPQEQRKANLEAFRHGQVPYLVCTDLAARGLDIAQVDQVVMFDFPLNPIDFIHRAGRTXXXXXKGSVLCLLQRRDRVLATGVQRAIRLGRPLSDLSSSRKDYEKGGRLEQLS 1261          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: XP_002183622.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44804.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 346.7 bits (888), Expect = 1.500e-91
Identity = 201/494 (40.69%), Postives = 294/494 (59.51%), Query Frame = 0
Query:  109 SSQPFSSPAITPKTPSGNSNDGNNNALDLAEFRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPALK--GEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKRDK------------IQYLMATATLTPAVKKLMVDEGN--------------------------FPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQSRQNGERV-----------MIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTG-----------EISFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTAR-----MGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARKRDYESGGKL 536
            S  PF  P  +P      +    N    L  + +LGL  E++E +  + ++ P+ +Q++AIP  LK   + +AF AATGSGKTLAY LP++Q LK  E    Y R+  RPR LILVPTRELV Q+  V K++SH +KLSSC + GG+D+GVQRR+L   +DVVVA+PGRL +H++  ++F   + ++VVDEMDTML+ GF  +L++L+ P+    + D+             + ++ +AT+T  ++K++ D  N                           P+T+ L++   HK++P ++ + +D    DK+ LL+D+VS S  +G  V           MIFCNT ASCRA + AL E  + S+ YHGD+ S  R+  L++F+             E   LVCTD+A+RGLD+P V+H+VMFDFPLN ++YLHRSGRTAR         G+VT+L++KRDKVLA+A++ AV +G  LD LS+RK DY  G +L
Sbjct:    4 SRAPFRMPRDSPDDSVPQAAAKTN----LLAWNQLGLWTELVEAMARLELQTPTPVQQLAIPELLKEPPQHLAFLAATGSGKTLAYALPLLQMLKQGEVFADYERRPKRPRLLILVPTRELVVQITSVIKSVSHSIKLSSCSITGGEDYGVQRRQLNRPIDVVVATPGRLTKHWKDSNLFLGSLEHIVVDEMDTMLEQGFYRELRQLLYPVLYHKQADQEINVEQDLDAKAPRIVLTSATMTQQIQKIIGDSDNKKNLVNAKRHHRKVEDAGFQVKVPMVLPRTKVLKAAGLHKTVPRLQQVFVDVGATDKLSLLVDIVS-SGGSGAAVAASLTDQQALTMIFCNTAASCRAAQFALSEARIESLAYHGDLNSAMRSENLKRFRAAGKKNCDNALAEEPRVLVCTDLAARGLDVPQVDHIVMFDFPLNALDYLHRSGRTARGVGGDRTGNGRVTALISKRDKVLANAIEQAVLRGDTLDGLSSRKSDYLPGARL 492          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: PRW05784.1 (DEAD-box ATP-dependent RNA helicase 39 [Chlorella sorokiniana])

HSP 1 Score: 345.9 bits (886), Expect = 2.600e-91
Identity = 186/395 (47.09%), Postives = 261/395 (66.08%), Query Frame = 0
Query:  140 FRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPAL--KGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYA-RQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKRDKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLD-TKGGDKVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGEIS---FLVCTDIASRGLDMP-FVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARK 527
            F  +G+  E+   L   GI  P+ IQ  A+P  L  +  D   ++ TGSGKTLAYLLP++Q LK  EA +G A  +  RPRAL+L PTREL  Q++ V KAL+H  K  S  ++GG D G QR +L   +DV+V +P R++QH EK HV++  V  VV+DE DTM   GFGP++K ++  +  +SK    + +M +AT+T AVK+LM +E  FP  + +++   H+ +   RH  L      +K+ LL+ VV      G+R+MIFCNT+ASCRA +H LRE  L + CYHGD+  DER AA++ F   ++S    LVCTD+A+RGLD+P  V+HV+ FDFPLNP++YLHR+GRTAR GA GK+TSL+ K D+VLA  ++ A+ +GLPLD+LSA +
Sbjct:   74 FGEIGVMPELQAALAEQGISTPTEIQAAAVPALLRHRSTDFVLASHTGSGKTLAYLLPVVQLLKEAEAHQGSAPAKPKRPRALVLGPTRELTDQILRVAKALAHTAKFRSALVNGGGDMGSQREQLERPLDVLVGTPQRVMQHAEKSHVYYGDVEVVVLDEADTMFDRGFGPEVKAILSAV--RSKAQPARCVMVSATMTKAVKRLMEEE--FPGMKQIETATLHRGVAGARHTFLPLPPAANKLDLLMQVVEGEHLRGKRLMIFCNTLASCRAADHFLRERGLQTACYHGDVPVDERKAAIQSFAHADLSRPPLLVCTDLAARGLDIPGRVDHVINFDFPLNPVDYLHRTGRTARAGATGKITSLVGKGDRVLAERIEDALQRGLPLDSLSANR 464          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: OAE27937.1 (hypothetical protein AXG93_3309s1340 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 341.3 bits (874), Expect = 6.500e-90
Identity = 184/416 (44.23%), Postives = 267/416 (64.18%), Query Frame = 0
Query:  120 PKTPSGNSNDGNNNALDLAE-FRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKR---DKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGD-KVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFK--TGEISF--LVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARK 527
            P   SG        +  LA+ F +LGL +E++  +  +GI  P+ +Q + IP    GE +  ++ TGSGKTLAY+LPI+Q L+  EA+ G A ++ RPRA++L PTREL  QV  V K+L H  +  +  + GG     Q   L   VD+VV +PGRLL H ++GH+ +  +  V +DE DTM   GFGP++++ + PL  +S +      Q ++ TAT+T AV+K++ +E  FP  R + +   HK + + RH  L   G + K++ L  V+  S   G RVM+FCNT+ SCRA +H LRE  + +V YHG++ ++ER   L KFK  TG  SF  LVCTD+A+RGLD+  V+HV+MFDFPLNP++YLHR+GRTARMGAKGKVTSL+TKRD  LA  ++ A+++G  L+AL++ +
Sbjct:   88 PGRLSGKEESAKPVSTPLAQSFEQLGLSDELMSAVIELGISKPTEVQSLGIPAVSNGESVVLASHTGSGKTLAYMLPIVQALRRDEAESGKATRARRPRAVVLCPTRELAEQVFHVAKSLCHHARFRAAMIGGGLKMKPQEDILNSAVDMVVGTPGRLLMHVKEGHMAYGDIKYVALDEADTMFDRGFGPEVRKFLGPLRNRSSQPGGTGFQTVLVTATITKAVQKVLDEE--FPGIRHIHTSTLHKKVSSARHDFLKLSGTENKLEALQQVLEPSLAKGNRVMVFCNTLNSCRAIDHFLRENGIQTVNYHGEIPAEERVENLNKFKEETGARSFPALVCTDLAARGLDL-VVDHVIMFDFPLNPVDYLHRTGRTARMGAKGKVTSLVTKRDSTLAGQIEDAMSRGESLEALTSSR 500          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: PTQ32736.1 (hypothetical protein MARPO_0095s0002 [Marchantia polymorpha])

HSP 1 Score: 341.3 bits (874), Expect = 6.500e-90
Identity = 184/416 (44.23%), Postives = 267/416 (64.18%), Query Frame = 0
Query:  120 PKTPSGNSNDGNNNALDLAE-FRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKR---DKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGD-KVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFK--TGEISF--LVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARK 527
            P   SG        +  LA+ F +LGL +E++  +  +GI  P+ +Q + IP    GE +  ++ TGSGKTLAY+LPI+Q L+  EA+ G A ++ RPRA++L PTREL  QV  V K+L H  +  +  + GG     Q   L   VD+VV +PGRLL H ++GH+ +  +  V +DE DTM   GFGP++++ + PL  +S +      Q ++ TAT+T AV+K++ +E  FP  R + +   HK + + RH  L   G + K++ L  V+  S   G RVM+FCNT+ SCRA +H LRE  + +V YHG++ ++ER   L KFK  TG  SF  LVCTD+A+RGLD+  V+HV+MFDFPLNP++YLHR+GRTARMGAKGKVTSL+TKRD  LA  ++ A+++G  L+AL++ +
Sbjct:   88 PGRLSGKEESAKPVSTPLAQSFEQLGLSDELMSAVIELGISKPTEVQSLGIPAVSNGESVVLASHTGSGKTLAYMLPIVQALRRDEAESGKATRARRPRAVVLCPTRELAEQVFHVAKSLCHHARFRAAMIGGGLKMKPQEDILNSAVDMVVGTPGRLLMHVKEGHMAYGDIKYVALDEADTMFDRGFGPEVRKFLGPLRNRSSQPGGTGFQTVLVTATITKAVQKVLDEE--FPGIRHIHTSTLHKKVSSARHDFLKLSGTENKLEALQQVLEPSLAKGNRVMVFCNTLNSCRAIDHFLRENGIQTVNYHGEIPAEERVENLNKFKEETGARSFPALVCTDLAARGLDL-VVDHVIMFDFPLNPVDYLHRTGRTARMGAKGKVTSLVTKRDSTLAGQIEDAMSRGESLEALTSSR 500          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: XP_022880066.1 (DEAD-box ATP-dependent RNA helicase 39 [Olea europaea var. sylvestris])

HSP 1 Score: 340.1 bits (871), Expect = 1.400e-89
Identity = 192/438 (43.84%), Postives = 274/438 (62.56%), Query Frame = 0
Query:  114 SSPAITPKTPSGNSNDGNNNALDLAE---------------FRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLE---TKSKRDKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGD-KVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKT--GEISFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSAR--KRD 529
            S+    P TP G+S+ G  +    +E               F  LGL EEV+  L  MGI +P+ IQ I IP  L+G+ +   + TGSGKTLAYLLP++Q L+  E   G   +  RPRA++L PTREL  QV  V+K++SH  +  S  + GG     Q   L   VD+VV +PGR+LQH E+G++ +  +  VV+DE DTM   GFGPD+++ + PL+   +K+  +  Q +M TAT+T AV+KL+ +E  F     L++   HK + + RH  +   G + K++ LL V+  S   G RVM+FCNT+ S RA +H L E  LS+V YHG++ +++R   L+KFK+  G+   LVCTD+A+RGLD+  V+HV+MFDFPLN I+YLHR+GRTARMGAKGKVTSL+ K+D +LA+ ++ A+ K   L++LS    KRD
Sbjct:   85 SAKITPPATPVGSSSSGKKSKYGESEGSRKKKGGGVEMVSSFWELGLSEEVMGALGEMGISEPTEIQCIGIPAVLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEILHGMLMKPRRPRAVVLCPTRELCEQVFRVSKSISHHARFRSTMVSGGGRLRPQEDSLNSPVDMVVGTPGRVLQHIEEGNMVYGDIRYVVLDEADTMFDRGFGPDIRKFIAPLKNRASKADSEGFQTVMVTATMTKAVQKLVDEE--FQGIIHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLNENQLSTVNYHGEVPAEQRVENLQKFKSNDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVMLANHIEEAIMKNESLESLSVESVKRD 519          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: PSC71941.1 (DEAD-box ATP-dependent RNA helicase 39 [Micractinium conductrix])

HSP 1 Score: 340.1 bits (871), Expect = 1.400e-89
Identity = 192/439 (43.74%), Postives = 275/439 (62.64%), Query Frame = 0
Query:  138 AEFRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPAL--KGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKRDKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLD-TKGGDKVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGE---ISFLVCTDIASRGLDMP-FVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARKRDYESGGKLSGLSSGKVGSSSKGNKHTKYVANG----QKSASG 566
            A F  LG+  E+   L   GI +P+ IQ  A+P  L  +  D   ++ TGSGKTLAYLLP++Q LK  E   G   +S RPRAL+L PTREL  Q+++V KALSH  K  S  ++GG D G QR +L   +DV+V +P R++QH EK H+++  V  VV+DE DTM   GFGP++K ++  + TK   +  + ++ +AT+T AV+KL+ D+  FP  R +++   H+ +   RH  L      +K+ LLL VV    + G+R+MIF NT+ASCRA +H L E  L + CYHGD+  +ER AA+ +F   +      LVCTD+A+RGLD+P  V+HVV FDFPLNPI+YLHR+GRTAR GA G++TSL+TK D+VLA  ++ A+ +GLPLDALS+ +       +    +  + G   K  KH+     G    ++++SG
Sbjct:   62 ASFGVLGVTAELQAALAEKGISEPTEIQAAAVPALLHDRSSDFMLASHTGSGKTLAYLLPVVQILKESELAGGATAKSRRPRALVLGPTRELTDQILQVAKALSHAAKFRSAVVNGGSDMGGQREQLERPLDVLVGTPQRVMQHAEKSHLYYGDVEVVVLDEADTMFDRGFGPEVKAILAAVRTKP--EPARCVLVSATMTKAVRKLIEDD--FPGMRQVETSSLHRGVAGARHTFLPMPPNANKLDLLLQVVEGEHRRGKRLMIFANTLASCRAADHFLSERGLQTACYHGDVPVEERRAAMTEFAAADGERPPLLVCTDLAARGLDIPGRVDHVVNFDFPLNPIDYLHRTGRTARAGATGRITSLVTKGDRVLAERIEEALQRGLPLDALSSDRAVLPQHMRPKKETLQRKGLERKAEKHSNKGVRGAGRVERTSSG 496          
BLAST of NO03G04210 vs. NCBI_GenBank
Match: XP_019174996.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 39 isoform X1 [Ipomoea nil])

HSP 1 Score: 339.7 bits (870), Expect = 1.900e-89
Identity = 185/407 (45.45%), Postives = 263/407 (64.62%), Query Frame = 0
Query:  130 GNNNALDLAEFRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKR---DKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGD-KVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFK--TGEISFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALS--ARKRD 529
            G N A++ + F  LGL EEV+  L  M I  P+ IQ I IP  L+G+ +   + TGSGKTLAYLLPI+Q L+  E   G   +  RPRA++L PTREL  QV  V K++SH  +  S  + GG     Q   L   +D+VV +PGR+LQH E+G++ +  +  VV+DE DTM   GFGPD+++ + PL+T++ +      Q ++ TAT+T AV+KL+ +E  F     L++   HK + + RH  +   G + K++ LL V+  S   G RVM+FCNT+ S RA +H L E  +S+V YHG++ +++R   LEKFK   G+   LVCTD+A+RGLD+  V+HV+MFDFP N I+YLHR+GRTARMGAKGKVTSL+ KRD +LA+ ++ A+ K   L++LS  + KRD
Sbjct:  115 GKNKAVEASSFEELGLSEEVMGALEEMNISLPTEIQAIGIPAVLRGKSVVLGSHTGSGKTLAYLLPIVQLLRRDEELYGILMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNSPIDMVVGTPGRVLQHIEEGNLVYGDIRYVVLDEADTMFDRGFGPDIRKFLRPLKTRAAKVDDQGFQTVLVTATMTKAVQKLVDEE--FQGIEHLRTSSFHKKIASARHDFIRLSGSENKLEALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEQRVENLEKFKRDDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAKRDLLLATKIEEALKKNESLESLSVDSIKRD 518          
The following BLAST results are available for this feature:
BLAST of NO03G04210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29847.12.500e-23579.89RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
CBJ32858.17.300e-12654.69DEAD box helicase [Ectocarpus siliculosus][more]
CEM06502.17.900e-10448.10unnamed protein product [Vitrella brassicaformis C... [more]
XP_002183622.11.500e-9140.69predicted protein [Phaeodactylum tricornutum CCAP ... [more]
PRW05784.12.600e-9147.09DEAD-box ATP-dependent RNA helicase 39 [Chlorella ... [more]
OAE27937.16.500e-9044.23hypothetical protein AXG93_3309s1340 [Marchantia p... [more]
PTQ32736.16.500e-9044.23hypothetical protein MARPO_0095s0002 [Marchantia p... [more]
XP_022880066.11.400e-8943.84DEAD-box ATP-dependent RNA helicase 39 [Olea europ... [more]
PSC71941.11.400e-8943.74DEAD-box ATP-dependent RNA helicase 39 [Micractini... [more]
XP_019174996.11.900e-8945.45PREDICTED: DEAD-box ATP-dependent RNA helicase 39 ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005470NSK005470Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04210.1NO03G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622231gene_1618Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g4gene779Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04210.1NO03G04210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04210 ID=NO03G04210|Name=NO03G04210|organism=Nannochloropsis oceanica|type=gene|length=2007bp
ATGCCAGGAGCCGCCTGCATAAACGCAGGGAGCAGGAAGACAGTTGACGC
AGTCAACGCCCTTCCAGCAACAAGCACCACATCCAGgtgagttgcatact
ttccgctttgatctagccatggacatcctttccttgttcatctcgcaacc
acaggaactgatttccaacgtttgttcaatcactgctattgcccatctca
attcacacacagAACTACTTCTTCAACTTGGGCCATTCATTCCTCTACCC
GCCGCGGTCGCCGCGCACCCACCTCCACATCCACCCTTCTTCTCCTGGCC
ATGCCATTCCTCCTTGCCTCCACCTTGACTCGCCCAGCATGCCTCGTGAC
CGCCTTCGTCGGCCGTCCACAGGTGCTGACCGTCGCACGTGCATCCACTC
GCGCACGCACCGCCGCCACCTTCCGGATGATGGGTGCTTTTGGCGGCATA
TCCTCCCAGCCCTTTTCTTCCCCCGCCATCACGCCTAAAACGCCTTCCGG
AAACAGCAATGACGGCAACAATAATGCGCTGGATCTGGCCGAGTTCCGTC
GCTTGGGCCTGGGTGAGGAGGTTCTGGAGGGCTTGCGGGCAATGGGCATT
AAAGACCCCTCCGTTATCCAGCGGATCGCAATTCCCCCCGCCTTGAAGGG
GGAAGACATCGCCTTTTCAGCTGCTACCGGTTCTGGCAAAACCTTAGCAT
ATCTCTTACCTATTATGCAGCGGCTAAAGTGGCAAGAAGCACAAGAAGGG
TATGCACGGCAGTCCTGTCGACCGCGGGCGTTGATTCTGGTACCGACCCG
CGAGCTAGTCACTCAGGTGGTGGAGGTCACAAAGGCACTGAGTCACGTCG
TCAAGTTGAGCTCGTGTGGGTTGCATGGAGGAGATGATTTTGGGGTGCAA
CGGCGGAGGTTGGGAGGGATGGTCGATGTAGTGGTGGCGTCGCCAGGGAG
GCTGCTGCAACACTATGAGAAGGGGCATGTATTTTTTTCGCAGGTCACCA
ACGTGGTGGTGGATGAGATGGACACGATGCTCAAGGATGGGTTTGGACCC
GATTTGAAGCGGCTAATGGTGCCTTTGGAAACAAAGAGCAAGCGCGATAA
GATCCAATATTTAATGGCGACAGCCACATTGACTCCCGCTGTCAAGAAGC
TGATGGTCGACGAGGGCAATTTCCCTAAAACGCGTTTTTTGCAGTCGGAG
GATGCTCACAAGTCTCTTCCGACGATGAGGCATATCATGCTTGATACCAA
GGGCGGCGACAAAGTACAGCTCTTGCTGGATGTCGTCAGCCAGAGCAGGC
AGAACGGGGAGAGGGTCATGATATTCTGTAATACCGTGGCGAGTTGCCGA
GCGACGGAGCACGCCCTGCGTGAGGTGGCTTTGTCCTCCGTGTGTTACCA
CGGAGACATGCGATCAGATGAGCGAGCGGCGGCGCTCGAGAAGTTCAAGA
CGGGAGAGATTTCGTTTTTGGTCTGCACAGATATTGCGTCCCGCGGGTTG
GATATGCCGTTTGTGGAGCACGTTGTTATGTTTGATTTTCCCTTGAACCC
CATCGAGTACTTGCACCGTTCTGGGCGCACAGCACGCATGGGGGCCAAGG
GGAAAGTGACTAGCTTGCTGACCAAGCGCGATAAAGTTTTGGCCTCGGCG
GTGCAGACGGCAGTGGCAAAAGGTCTGCCGTTAGATGCGCTCTCGGCACG
GAAGCGGGATTATGAATCGGGCGGCAAGTTGTCGGGCCTGTCGTCGGGCA
AAGTAGGTTCGTCGAGCAAGGGCAACAAACACACCAAATACGTGGCAAAT
GGGCAGAAAAGCGCCAGTGGTCGCGCAGGAAGCAGTGGAGGGCCCTCAGA
AAGGGGCAAGAGAGGGCCTGGGCGGCCGTCGTCGGGTTCATCCTCGTACG
GACCATCGAGAGGCGGTGCTGGCGGGGGAGGGGGGGTAAGAGGGCGGACG
TCTGCAGGGGCAGGCGCACGTAGGCGGGGCAGTGATAGTGGGGGCGGTGG
GCGATAA
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protein sequence of NO03G04210.1

>NO03G04210.1-protein ID=NO03G04210.1-protein|Name=NO03G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MPGAACINAGSRKTVDAVNALPATSTTSRTTSSTWAIHSSTRRGRRAPTS
TSTLLLLAMPFLLASTLTRPACLVTAFVGRPQVLTVARASTRARTAATFR
MMGAFGGISSQPFSSPAITPKTPSGNSNDGNNNALDLAEFRRLGLGEEVL
EGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRL
KWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLH
GGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDT
MLKDGFGPDLKRLMVPLETKSKRDKIQYLMATATLTPAVKKLMVDEGNFP
KTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQSRQNGERVMIF
CNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGEISFLVC
TDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTK
RDKVLASAVQTAVAKGLPLDALSARKRDYESGGKLSGLSSGKVGSSSKGN
KHTKYVANGQKSASGRAGSSGGPSERGKRGPGRPSSGSSSYGPSRGGAGG
GGGVRGRTSAGAGARRRGSDSGGGGR*
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Synonyms
Publications