NO03G04210.1, NO03G04210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04210.1
Unique NameNO03G04210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1881
Alignment locationchr3:1216512..1218518 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1216512..1218518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04210.1 vs.
Match: EWM29847.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 829.7 bits (2142), Expect = 6.000e-237
Identity = 462/597 (77.39%), Postives = 506/597 (84.76%), Query Frame = 0 
Query:   19 NALPATSTTSRTTSSTWAIHSSTRRGRRAPTSTSTL-LLLAMPFLLASTLTRPACLVTAFVGRPQVLT-VARASTRARTAATFRMMGAFGGISSQPFSSPAITPKTPSGNSNDGNNNALDLAEFRRLGLGEEVLEGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDGFGPDLKRLMVPLETKSKRDKIQYLMATATLTPAVKKLMVDEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQSRQNGERVMIFCNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGEISFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDALSARKRDYESGGKLSGLSSGKVGS--SSKGNKHTKYVANGQKSASGRAGSSGGPSERGKRGPGR-PSSGSSSYGPSRGGAGGGGGVRGRTSA 611
            +ALP T+TT+       AIH  +R      T+ S   LLLAMP LL+   TR  C+V+AF  RP   + V+R   R+R     RMMGAFGGISSQPFS+PAI  KT S + ++  N A DLAEFRRLGLGEE LEGLR +GIK+PSVIQR+AIP ALKG+D+AFSA+TGSGKTLAYLLPIMQ LKWQEA EG  RQ+CRPRALILVPTRELVTQV+EV K+LSHV+KLSSCGLHGG+DFGVQRRRLGGMVD+VVASPGRLLQHYEKGHVFFSQVT+VVVDEMDTMLKDGFGPDLKRLMVPLE KSKR+K+QYLMATATLTPAVK+LM +EGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQ RQNGER MIFCNTV SCRA EHALRE+AL S CYHGDMRS+ERAAALEKFK+GE+SFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLD+LSARKRDYESGGKLSGLSSGK+G+  SSKGN+H KYVAN Q+SASGRAGS  G  E+G RG  R PS+ S + GPSR    G   V G   A
Sbjct:   17 SALPNTATTASR-----AIHFQSRLRLAFRTTPSICALLLAMPLLLSPHWTRSVCVVSAFHLRPSTASKVSRGVGRSREV--LRMMGAFGGISSQPFSTPAIPSKTTSRSGDE--NAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHAKYVANRQRSASGRAGSIEGSPEKGARGVRRAPSAPSGAQGPSRRRGRGDSAVAGGEDA 604
The following BLAST results are available for this feature:
BLAST of NO03G04210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29847.16.000e-23777.39RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04210NO03G04210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04210.1NO03G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04210.1.cds1NO03G04210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04210.1.cds2NO03G04210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04210.1 ID=NO03G04210.1|Name=NO03G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp
ATGCCAGGAGCCGCCTGCATAAACGCAGGGAGCAGGAAGACAGTTGACGC
AGTCAACGCCCTTCCAGCAACAAGCACCACATCCAGAACTACTTCTTCAA
CTTGGGCCATTCATTCCTCTACCCGCCGCGGTCGCCGCGCACCCACCTCC
ACATCCACCCTTCTTCTCCTGGCCATGCCATTCCTCCTTGCCTCCACCTT
GACTCGCCCAGCATGCCTCGTGACCGCCTTCGTCGGCCGTCCACAGGTGC
TGACCGTCGCACGTGCATCCACTCGCGCACGCACCGCCGCCACCTTCCGG
ATGATGGGTGCTTTTGGCGGCATATCCTCCCAGCCCTTTTCTTCCCCCGC
CATCACGCCTAAAACGCCTTCCGGAAACAGCAATGACGGCAACAATAATG
CGCTGGATCTGGCCGAGTTCCGTCGCTTGGGCCTGGGTGAGGAGGTTCTG
GAGGGCTTGCGGGCAATGGGCATTAAAGACCCCTCCGTTATCCAGCGGAT
CGCAATTCCCCCCGCCTTGAAGGGGGAAGACATCGCCTTTTCAGCTGCTA
CCGGTTCTGGCAAAACCTTAGCATATCTCTTACCTATTATGCAGCGGCTA
AAGTGGCAAGAAGCACAAGAAGGGTATGCACGGCAGTCCTGTCGACCGCG
GGCGTTGATTCTGGTACCGACCCGCGAGCTAGTCACTCAGGTGGTGGAGG
TCACAAAGGCACTGAGTCACGTCGTCAAGTTGAGCTCGTGTGGGTTGCAT
GGAGGAGATGATTTTGGGGTGCAACGGCGGAGGTTGGGAGGGATGGTCGA
TGTAGTGGTGGCGTCGCCAGGGAGGCTGCTGCAACACTATGAGAAGGGGC
ATGTATTTTTTTCGCAGGTCACCAACGTGGTGGTGGATGAGATGGACACG
ATGCTCAAGGATGGGTTTGGACCCGATTTGAAGCGGCTAATGGTGCCTTT
GGAAACAAAGAGCAAGCGCGATAAGATCCAATATTTAATGGCGACAGCCA
CATTGACTCCCGCTGTCAAGAAGCTGATGGTCGACGAGGGCAATTTCCCT
AAAACGCGTTTTTTGCAGTCGGAGGATGCTCACAAGTCTCTTCCGACGAT
GAGGCATATCATGCTTGATACCAAGGGCGGCGACAAAGTACAGCTCTTGC
TGGATGTCGTCAGCCAGAGCAGGCAGAACGGGGAGAGGGTCATGATATTC
TGTAATACCGTGGCGAGTTGCCGAGCGACGGAGCACGCCCTGCGTGAGGT
GGCTTTGTCCTCCGTGTGTTACCACGGAGACATGCGATCAGATGAGCGAG
CGGCGGCGCTCGAGAAGTTCAAGACGGGAGAGATTTCGTTTTTGGTCTGC
ACAGATATTGCGTCCCGCGGGTTGGATATGCCGTTTGTGGAGCACGTTGT
TATGTTTGATTTTCCCTTGAACCCCATCGAGTACTTGCACCGTTCTGGGC
GCACAGCACGCATGGGGGCCAAGGGGAAAGTGACTAGCTTGCTGACCAAG
CGCGATAAAGTTTTGGCCTCGGCGGTGCAGACGGCAGTGGCAAAAGGTCT
GCCGTTAGATGCGCTCTCGGCACGGAAGCGGGATTATGAATCGGGCGGCA
AGTTGTCGGGCCTGTCGTCGGGCAAAGTAGGTTCGTCGAGCAAGGGCAAC
AAACACACCAAATACGTGGCAAATGGGCAGAAAAGCGCCAGTGGTCGCGC
AGGAAGCAGTGGAGGGCCCTCAGAAAGGGGCAAGAGAGGGCCTGGGCGGC
CGTCGTCGGGTTCATCCTCGTACGGACCATCGAGAGGCGGTGCTGGCGGG
GGAGGGGGGGTAAGAGGGCGGACGTCTGCAGGGGCAGGCGCACGTAGGCG
GGGCAGTGATAGTGGGGGCGGTGGGCGATAA
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protein sequence of NO03G04210.1

>NO03G04210.1-protein ID=NO03G04210.1-protein|Name=NO03G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MPGAACINAGSRKTVDAVNALPATSTTSRTTSSTWAIHSSTRRGRRAPTS
TSTLLLLAMPFLLASTLTRPACLVTAFVGRPQVLTVARASTRARTAATFR
MMGAFGGISSQPFSSPAITPKTPSGNSNDGNNNALDLAEFRRLGLGEEVL
EGLRAMGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRL
KWQEAQEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLH
GGDDFGVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDT
MLKDGFGPDLKRLMVPLETKSKRDKIQYLMATATLTPAVKKLMVDEGNFP
KTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQSRQNGERVMIF
CNTVASCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGEISFLVC
TDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTK
RDKVLASAVQTAVAKGLPLDALSARKRDYESGGKLSGLSSGKVGSSSKGN
KHTKYVANGQKSASGRAGSSGGPSERGKRGPGRPSSGSSSYGPSRGGAGG
GGGVRGRTSAGAGARRRGSDSGGGGR*
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mRNA from alignment at chr3:1216512..1218518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04210.1 ID=NO03G04210.1|Name=NO03G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at chr3:1216512..1218518+ (Nannochloropsis oceanica)
ATGCCAGGAGCCGCCTGCATAAACGCAGGGAGCAGGAAGACAGTTGACGC
AGTCAACGCCCTTCCAGCAACAAGCACCACATCCAGGTGAGTTGCATACT
TTCCGCTTTGATCTAGCCATGGACATCCTTTCCTTGTTCATCTCGCAACC
ACAGGAACTGATTTCCAACGTTTGTTCAATCACTGCTATTGCCCATCTCA
ATTCACACACAGAACTACTTCTTCAACTTGGGCCATTCATTCCTCTACCC
GCCGCGGTCGCCGCGCACCCACCTCCACATCCACCCTTCTTCTCCTGGCC
ATGCCATTCCTCCTTGCCTCCACCTTGACTCGCCCAGCATGCCTCGTGAC
CGCCTTCGTCGGCCGTCCACAGGTGCTGACCGTCGCACGTGCATCCACTC
GCGCACGCACCGCCGCCACCTTCCGGATGATGGGTGCTTTTGGCGGCATA
TCCTCCCAGCCCTTTTCTTCCCCCGCCATCACGCCTAAAACGCCTTCCGG
AAACAGCAATGACGGCAACAATAATGCGCTGGATCTGGCCGAGTTCCGTC
GCTTGGGCCTGGGTGAGGAGGTTCTGGAGGGCTTGCGGGCAATGGGCATT
AAAGACCCCTCCGTTATCCAGCGGATCGCAATTCCCCCCGCCTTGAAGGG
GGAAGACATCGCCTTTTCAGCTGCTACCGGTTCTGGCAAAACCTTAGCAT
ATCTCTTACCTATTATGCAGCGGCTAAAGTGGCAAGAAGCACAAGAAGGG
TATGCACGGCAGTCCTGTCGACCGCGGGCGTTGATTCTGGTACCGACCCG
CGAGCTAGTCACTCAGGTGGTGGAGGTCACAAAGGCACTGAGTCACGTCG
TCAAGTTGAGCTCGTGTGGGTTGCATGGAGGAGATGATTTTGGGGTGCAA
CGGCGGAGGTTGGGAGGGATGGTCGATGTAGTGGTGGCGTCGCCAGGGAG
GCTGCTGCAACACTATGAGAAGGGGCATGTATTTTTTTCGCAGGTCACCA
ACGTGGTGGTGGATGAGATGGACACGATGCTCAAGGATGGGTTTGGACCC
GATTTGAAGCGGCTAATGGTGCCTTTGGAAACAAAGAGCAAGCGCGATAA
GATCCAATATTTAATGGCGACAGCCACATTGACTCCCGCTGTCAAGAAGC
TGATGGTCGACGAGGGCAATTTCCCTAAAACGCGTTTTTTGCAGTCGGAG
GATGCTCACAAGTCTCTTCCGACGATGAGGCATATCATGCTTGATACCAA
GGGCGGCGACAAAGTACAGCTCTTGCTGGATGTCGTCAGCCAGAGCAGGC
AGAACGGGGAGAGGGTCATGATATTCTGTAATACCGTGGCGAGTTGCCGA
GCGACGGAGCACGCCCTGCGTGAGGTGGCTTTGTCCTCCGTGTGTTACCA
CGGAGACATGCGATCAGATGAGCGAGCGGCGGCGCTCGAGAAGTTCAAGA
CGGGAGAGATTTCGTTTTTGGTCTGCACAGATATTGCGTCCCGCGGGTTG
GATATGCCGTTTGTGGAGCACGTTGTTATGTTTGATTTTCCCTTGAACCC
CATCGAGTACTTGCACCGTTCTGGGCGCACAGCACGCATGGGGGCCAAGG
GGAAAGTGACTAGCTTGCTGACCAAGCGCGATAAAGTTTTGGCCTCGGCG
GTGCAGACGGCAGTGGCAAAAGGTCTGCCGTTAGATGCGCTCTCGGCACG
GAAGCGGGATTATGAATCGGGCGGCAAGTTGTCGGGCCTGTCGTCGGGCA
AAGTAGGTTCGTCGAGCAAGGGCAACAAACACACCAAATACGTGGCAAAT
GGGCAGAAAAGCGCCAGTGGTCGCGCAGGAAGCAGTGGAGGGCCCTCAGA
AAGGGGCAAGAGAGGGCCTGGGCGGCCGTCGTCGGGTTCATCCTCGTACG
GACCATCGAGAGGCGGTGCTGGCGGGGGAGGGGGGGTAAGAGGGCGGACG
TCTGCAGGGGCAGGCGCACGTAGGCGGGGCAGTGATAGTGGGGGCGGTGG
GCGATAA
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Coding sequence (CDS) from alignment at chr3:1216512..1218518+

>NO03G04210.1 ID=NO03G04210.1|Name=NO03G04210.1|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr3:1216512..1218518+ (Nannochloropsis oceanica)
ATGCCAGGAGCCGCCTGCATAAACGCAGGGAGCAGGAAGACAGTTGACGC
AGTCAACGCCCTTCCAGCAACAAGCACCACATCCAGAACTACTTCTTCAA
CTTGGGCCATTCATTCCTCTACCCGCCGCGGTCGCCGCGCACCCACCTCC
ACATCCACCCTTCTTCTCCTGGCCATGCCATTCCTCCTTGCCTCCACCTT
GACTCGCCCAGCATGCCTCGTGACCGCCTTCGTCGGCCGTCCACAGGTGC
TGACCGTCGCACGTGCATCCACTCGCGCACGCACCGCCGCCACCTTCCGG
ATGATGGGTGCTTTTGGCGGCATATCCTCCCAGCCCTTTTCTTCCCCCGC
CATCACGCCTAAAACGCCTTCCGGAAACAGCAATGACGGCAACAATAATG
CGCTGGATCTGGCCGAGTTCCGTCGCTTGGGCCTGGGTGAGGAGGTTCTG
GAGGGCTTGCGGGCAATGGGCATTAAAGACCCCTCCGTTATCCAGCGGAT
CGCAATTCCCCCCGCCTTGAAGGGGGAAGACATCGCCTTTTCAGCTGCTA
CCGGTTCTGGCAAAACCTTAGCATATCTCTTACCTATTATGCAGCGGCTA
AAGTGGCAAGAAGCACAAGAAGGGTATGCACGGCAGTCCTGTCGACCGCG
GGCGTTGATTCTGGTACCGACCCGCGAGCTAGTCACTCAGGTGGTGGAGG
TCACAAAGGCACTGAGTCACGTCGTCAAGTTGAGCTCGTGTGGGTTGCAT
GGAGGAGATGATTTTGGGGTGCAACGGCGGAGGTTGGGAGGGATGGTCGA
TGTAGTGGTGGCGTCGCCAGGGAGGCTGCTGCAACACTATGAGAAGGGGC
ATGTATTTTTTTCGCAGGTCACCAACGTGGTGGTGGATGAGATGGACACG
ATGCTCAAGGATGGGTTTGGACCCGATTTGAAGCGGCTAATGGTGCCTTT
GGAAACAAAGAGCAAGCGCGATAAGATCCAATATTTAATGGCGACAGCCA
CATTGACTCCCGCTGTCAAGAAGCTGATGGTCGACGAGGGCAATTTCCCT
AAAACGCGTTTTTTGCAGTCGGAGGATGCTCACAAGTCTCTTCCGACGAT
GAGGCATATCATGCTTGATACCAAGGGCGGCGACAAAGTACAGCTCTTGC
TGGATGTCGTCAGCCAGAGCAGGCAGAACGGGGAGAGGGTCATGATATTC
TGTAATACCGTGGCGAGTTGCCGAGCGACGGAGCACGCCCTGCGTGAGGT
GGCTTTGTCCTCCGTGTGTTACCACGGAGACATGCGATCAGATGAGCGAG
CGGCGGCGCTCGAGAAGTTCAAGACGGGAGAGATTTCGTTTTTGGTCTGC
ACAGATATTGCGTCCCGCGGGTTGGATATGCCGTTTGTGGAGCACGTTGT
TATGTTTGATTTTCCCTTGAACCCCATCGAGTACTTGCACCGTTCTGGGC
GCACAGCACGCATGGGGGCCAAGGGGAAAGTGACTAGCTTGCTGACCAAG
CGCGATAAAGTTTTGGCCTCGGCGGTGCAGACGGCAGTGGCAAAAGGTCT
GCCGTTAGATGCGCTCTCGGCACGGAAGCGGGATTATGAATCGGGCGGCA
AGTTGTCGGGCCTGTCGTCGGGCAAAGTAGGTTCGTCGAGCAAGGGCAAC
AAACACACCAAATACGTGGCAAATGGGCAGAAAAGCGCCAGTGGTCGCGC
AGGAAGCAGTGGAGGGCCCTCAGAAAGGGGCAAGAGAGGGCCTGGGCGGC
CGTCGTCGGGTTCATCCTCGTACGGACCATCGAGAGGCGGTGCTGGCGGG
GGAGGGGGGGTAAGAGGGCGGACGTCTGCAGGGGCAGGCGCACGTAGGCG
GGGCAGTGATAGTGGGGGCGGTGGGCGATAA
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Synonyms
Publications