NO03G04060, NO03G04060 (gene) Nannochloropsis oceanica

Overview
NameNO03G04060
Unique NameNO03G04060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length333
Alignment locationchr3:1182164..1182496 +

Link to JBrowse

Properties
Property NameValue
DescriptionFerredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1182164..1182496 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
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BLAST of NO03G04060 vs. NCBI_GenBank
Match: XP_005853433.1 (ferredoxin [Nannochloropsis gaditana CCMP526] >EKU22924.1 ferredoxin [Nannochloropsis gaditana CCMP526] >EWM29870.1 conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 177.9 bits (450), Expect = 1.700e-41
Identity = 85/109 (77.98%), Postives = 96/109 (88.07%), Query Frame = 0 
Query:    2 MAFRFVQTLALVLTTSAFFLPQAPHTYGVKRGGPVFNGDVEVIFPGNKKAKAKPGEALKAVAAKAKFSPNYGCEEGKCGSCELKGSDGKKYRVCITKVPKAAGPLTLKP 111
            M  R VQ L L++ T+AFF P AP + G+KRGGPV+NGDVEVI+PGNKK KAKPGEALKAVAA+A+++PNYGCEEGKCGSCE KGSDGKKYRVCITKVPK AGPLTLKP
Sbjct:    8 MMLRIVQALTLLMATTAFFAPHAP-SAGIKRGGPVYNGDVEVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLTLKP 115
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BLAST of NO03G04060 vs. NCBI_GenBank
Match: CBJ30370.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-11
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 0 
Query:    2 MAFRFVQTLALVLTTSAFFLPQAPHTYGVKRGGPVFNGDVEVIFPGNKKAKAKPGEALKAVAAKAKFSPNYGCEEGKCGSCELKGSDGKKYRVCITKVPKAAGPLT 108
            M  R V  +  +L  +A F+  +     V R     +   +V FPG KK KA  G  LK VA KA +   YGCEEGKCG+CE K  +GKK R+CI K+P  AGP T
Sbjct:    1 MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLS-MADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHK-VNGKKIRLCIGKLPAGAGPFT 104
The following BLAST results are available for this feature:
BLAST of NO03G04060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853433.11.700e-4177.98ferredoxin [Nannochloropsis gaditana CCMP526] >EKU... [more]
CBJ30370.11.100e-1144.34conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005457NSK005457Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04060.1NO03G04060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100106g15gene767Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04060.1NO03G04060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04060 ID=NO03G04060|Name=NO03G04060|organism=Nannochloropsis oceanica|type=gene|length=333bp
ATGATGGCCTTTCGTTTCGTCCAAACCTTGGCCTTGGTGCTGACCACTTC
TGCCTTTTTCCTCCCGCAAGCCCCCCACACATATGGCGTGAAGCGTGGCG
GCCCCGTTTTCAATGGCGACGTCGAGGTAATCTTCCCCGGAAATAAGAAG
GCCAAGGCCAAGCCAGGTGAAGCACTCAAAGCCGTGGCTGCGAAAGCGAA
ATTTAGCCCCAACTATGGCTGTGAGGAGGGAAAGTGCGGCTCATGCGAGC
TCAAAGGCAGCGATGGGAAGAAGTACCGAGTCTGCATCACCAAGGTGCCC
AAGGCTGCGGGACCCTTGACGTTGAAACCCTAA
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protein sequence of NO03G04060.1

>NO03G04060.1-protein ID=NO03G04060.1-protein|Name=NO03G04060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MMAFRFVQTLALVLTTSAFFLPQAPHTYGVKRGGPVFNGDVEVIFPGNKK
AKAKPGEALKAVAAKAKFSPNYGCEEGKCGSCELKGSDGKKYRVCITKVP
KAAGPLTLKP*
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Synonyms
Publications