NO03G03990, NO03G03990 (gene) Nannochloropsis oceanica

Overview
NameNO03G03990
Unique NameNO03G03990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3117
Alignment locationchr3:1164377..1167493 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1164377..1167493 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G03990 vs. NCBI_GenBank
Match: EWM29835.1 (hypothetical protein Naga_100017g30 [Nannochloropsis gaditana])

HSP 1 Score: 455.3 bits (1170), Expect = 4.400e-124
Identity = 340/901 (37.74%), Postives = 454/901 (50.39%), Query Frame = 0 
Query:   44 KDEEDERSNG--NADADSKMHIWPRYHLVDHLHVTLTTPPITQSLLPNWLLPSLSSVLPPPLPSMEGEAEQAQRSQRQHLQPPPLLFLSCADPFVIDNLVQDVFEKRPLDGPRVVVDFSSQDDGQSVQATYRIQSGSQP------LRHLSFFGETEDKDFEAAPLTGTVVLNLTPLLSLPVATPATNDMLRRVVDWITERQLPRPYNDKGQGGKH-QSLQVVLTATNPLGLWRLQKFSRLLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEEDDKTKEKEAAIPIFHLEILGPTHGYLFKQASLLLGSXXXXXXXXXXXXXXXXXXXXXXXGIAGTATTTVSPSFKDEEDHPPEHDQPPDQEAGFM---------VVDKAANALDLRHFLSLQPTLGVLSHFSEARDPDTAAATLHNLVANETERLRSAFSSTISSSGSSRKGTTTAAIILWDVLNAIHGDRIDMLSQGQIEGGTTQPRVVPLESVLQLCDNNFRILEALIAEGWVEFSYPELKGSSVTIEGSQSPFSGNVEEPEGREGSGRGQEETQIEGD--ERQTVNAENIVAPSQPDL----------PEGYEHESAIFPEAESGTA--------------TEIPIA----DESWLICRGSLETLQGGGMKNSDXXXXXXXXXXXXXXXXEGGLDSVPLPKWISTPAAVTMAWKTLEIDPALARYMHARADARHFVQEANVLGHHREALGMEWAELHKARMVLRERAPELSDEDFISLQLELIRLEKSAASRALEMLLRCKRLKELHEKMCGVLTAEEVPCIKLLSGQLVSSGSCGGDFQENETDGGVTCGSGEENAQFW--IPIEEKVLAEMGRGLRGVPVVDVTSMQSSSLSLSSSETDQEGKGEKSSASRWMRSWWPWRK 895
            +DEE +  +G   A  ++    WPR  LVD+LHV   T      L+P WL  S  S L         E E+     R     PPL+F++CADPFVI+NLV D FEKR  + P + + F S+ D        ++ S  +P      L  L+  GET   D       GTVVL+L+ LLSLP ++ ++  MLRRV+ WI ERQ   P + +G+  +  +SLQ +LTAT PL LWRLQ  +R   Q+                              E +          PIFHL+ILGP H  L +Q   LL S                        +  T T   SPS +     PP  D  P++ +G           V ++A++ L L  FLS +P+LGVLS  S A+D    A  + +LVA ET RLR         S + +      A++LWDVL AIHG+ ID+++ G ++    Q  +V LE VLQLCDNNF  LEAL+AEGW+EF YPE+          Q+  +G+  E E  +G G+      IE +   R+T+ A+  ++     L              E   A   E E G A              TE+ +         L+C+GS E L G    + D                  GLDSVPLP+W++TPA V +AWK LE+DPAL + M+ RADARHFVQEA++L +HR+AL  EWAEL++ R  LR RA EL+DEDFI+LQLELIRLEK AASRALEM LR KRL+ELH  +   L+AEE P ++LL G++         F++    G    G   E    +  +PIEE+VL EM RGLRGVPVVDVT+  SSS +       QE     ++A  W   WWPWR+
Sbjct:    3 RDEEKKSGSGISKATHEASETPWPRQRLVDYLHVETPTSSAFSHLIPKWLGKSFLSQL--------REGERKVSDIRGPPPRPPLIFVACADPFVIENLVSDAFEKRSNNLPHIRIHFQSKKDKGEEDVDLQLCSQVRPHYQETALLSLTENGETHGADVSLK--AGTVVLDLSSLLSLPNSSSSSIKMLRRVLAWI-ERQQVSPRHVEGENRQRGESLQFILTATTPLALWRLQNVAREQYQE----------------QTQKNYAKRGEDESESNVSATHDRGDTPIFHLQILGPNHDLLVRQVDWLLKSTCLSPDSTP---------------VELTLTRADSPSKEGMSKPPP--DSKPEESSGVSPSPNHVAAEVDNEASDELILNEFLSFRPSLGVLSSLSGAKDAKEGAKRVKDLVATETARLRVLLEGGGGKSHTDQ--PCMKAVLLWDVLQAIHGESIDIITCGNVQ-SAAQRGIVSLEKVLQLCDNNFGQLEALLAEGWLEFYYPEI---------DQTLQNGSSAEGENEKGRGKSYRHAHIEKNPTARETLTADGALSAWSDPLVMRKGSERMGESSAEILRAFHSEGEEGGAEVVNGTAVRSQLRSTEVALGSLNDQNPLLVCQGSFENLHGSDTDDDDK-----------------GLDSVPLPRWLTTPATVALAWKNLEMDPALIKRMNVRADARHFVQEASLLQYHRQALSAEWAELYRGRGALRARASELTDEDFINLQLELIRLEKGAASRALEMSLRRKRLQELHRALGDSLSAEETPSMELLKGEVPQ--PTRHVFEKGAVVGEEIPGPYIEGQDPYDELPIEERVLVEMDRGLRGVPVVDVTASMSSSRA-------QEXXXXXAAA--W--KWWPWRR 817
The following BLAST results are available for this feature:
BLAST of NO03G03990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29835.14.400e-12437.74hypothetical protein Naga_100017g30 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005497NSK005497Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03990.1NO03G03990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100017g30gene803Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03990.1NO03G03990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03990 ID=NO03G03990|Name=NO03G03990|organism=Nannochloropsis oceanica|type=gene|length=3117bp
ATGAAGCTATTTGGTGGCAAAACGGGAGAGGTTGGGTTGAAGCAACgtac
gtcgtcaagtttaaggaagtcatcctgtcatcacgaacgcagccacgcca
acccatgatcctcatcgaccctttccacatctacagGCATGGCATCAAGC
ATCACGCTTCGGCAGCTGGCGAAATTTGGGGCCGTGGTGGTGGGAGGCGG
GGTCACATCATGGTGGCTTAAAGACGAGGAGGACGAGAGAAGCAACGGCA
ATGCAGACGCGGACAGCAAGATGCACATCTGGCCGCGGTATCACCTTGTG
GACCACCTTCACGTCACGCTCACTACACCGCCCATAACTCAGTCATTGCT
CCCGAACTGGTTGCTGCCATCTTTGTCGTCAGTTTTACCGCCGCCGCTGC
CATCAATGGAGGGGGAAGCGGAGCAGGCGCAACGGTCTCAGCGGCAGCAT
CTTCAGCCTCCCCCACTTCTTTTCTTATCGTGCGCCGACCCCTTTGTCAT
CGATAATCTGGTGCAAGATGTATTTGAGAAGCGgtacgtgaaacgatggc
ttgttcgcgcgaataagggagggtgcgggcttattgataatgacgagaat
ggagagagcaacgaggctcctttgttcgatgccatttcagtcataattgc
tgcctttgctgctacaatattccaaacgtttgcgatagtcagtcaaatat
tttaattatctagtctcaagttttatactttaatccttctcccttctgaa
acacactcaatcgagcagGCCACTTGATGGGCCTCGCGTTGTGGTCGACT
TCAGCAGCCAAGACGACGGCCAAAGCGTACAGGCCACCTATCGCATCCAA
TCTGGAAGCCAGCCTTTGAGGCATTTATCCTTTTTTGGTGAAACAGAGGA
CAAGGATTTTGAGGCCGCACCACTGACGGGGACAGTCGTATTAAACCTTA
CGCCGCTCCTGTCCCTGCCCGTCGCCACGCCTGCCACGAACGACATGCTT
CGACGCGTTGTGGACTGGATCACGGAGCGGCAGCTTCCTCGGCCCTACAA
TGATAAAGGGCAAGGAGGCAAACACCAGAGTTTGCAGGTCGTCTTGACAG
CCACAAACCCTCTTGGGCTATGGCGCCTGCAGAAATTTTCCAGGCTCTTG
CAGCAGCAGCACCACCACCTCCAGCGGCTGCGGCTACCGCACCAGCACCA
GGAGGAGGAAGGAAAAAGTGAGCAGCGCCTGGAGCAGCAAGGTAGCCTTG
AAGAAGATGACAAAACGAAGGAGAAGGAAGCGGCTATCCCTATTTTCCAT
CTCGAAATTCTGGGACCCACGCATGGGTACTTATTCAAGCAAGCCTCGTT
GCTCTTGGGGTCCTCCTCCTCACCCGCACCACCCACGGCGACTTCGACAA
CAGCAGTTGCAATGACAGTGGAATCAGAACAGGGCATTGCTGGGACAGCC
ACAACGACGGTATCGCCCTCCTTCAAGGACGAGGAGGACCATCCTCCCGA
ACATGACCAACCACCAGACCAGGAAGCCGGGTTCATGGTGGTGGACAAGG
CCGCGAACGCCCTAGACCTCCGACACTTCCTCTCCCTGCAACCGACGCTG
GGGGTGCTCTCCCATTTCTCAGAAGCCCGTGACCCAGACACTGCCGCAGC
AACCCTTCACAATCTAGTCGCGAACGAGACGGAACGGCTTCGATCTGCTT
TTAGTAGTACAATTAGTAGCAGCGGCAGCAGTCGCAAAGGCACCACCACC
GCGGCTATCATTCTTTGGGATGTTCTTAATGCCATCCATGGAGACCGTAT
CGATATGCTTAGTCAGGGCCAAATTGAGGGAGGGACCACCCAACCACGAG
TGGTACCCCTTGAGAGCGTGCTGCAGCTCTGCGACAACAACTTTCGTATT
TTAGAGGCCTTGATAGCTGAGGGATGGGTGGAGTTTAGCTATCCCGAGTT
GAAGGGCAGCAGCGTCACAATAGAAGGGAGTCAGTCTCCTTTCAGTGGCA
ATGTGGAGGAGCCAGAAGGACGAGAAGGAAGTGGGCGAGGTCAAGAGGAA
ACTCAAATTGAGGGAGATGAGCGACAGACGGTAAATGCAGAGAACATTGT
GGCGCCCTCTCAACCCGACCTACCTGAAGGCTATGAGCATGAGTCAGCAA
TATTTCCAGAAGCAGAGTCAGGAACAGCGACGGAAATACCAATAGCAGAT
GAATCTTGGCTTATTTGCCGCGGCTCTCTCGAAACCCTGCAAGGAGGGGG
AATGAAGAACAGCGACAGCAGCAACAGCAGCAACAAGGGCAGCAAAGAGA
GCAAGGACGAAGAAGAGGGAGGCTTAGACTCCGTCCCCCTTCCGAAATGG
ATATCGACCCCTGCTGCTGTCACCATGGCATGGAAAACACTTGAGATCGA
CCCAGCACTCGCGCGATATATGCACGCTCGTGCGGATGCCCGGCACTTTG
TACAGGAGGCAAATGTACTTGGGCATCACCGGGAAGCCTTGGGTATGGAA
TGGGCGGAGCTACACAAAGCTCGAATGGTTTTAAGAGAACGAGCACCGGA
GCTGAGTGACGAGGATTTCATTAGCTTACAATTGGAACTGATTCGATTGG
AGAAGAGCGCGGCGTCAAGGGCTCTGGAGATGTTGTTGCGGTGTAAGCGT
TTGAAAGAACTTCATGAAAAGATGTGCGGTGTATTGACGGCAGAGGAAGT
TCCCTGCATTAAGCTGCTTAGCGGGCAGCTGGTAAGCAGTGGCAGTTGTG
GTGGTGATTTTCAAGAGAATGAGACGGATGGGGGTGTTACTTGTGGAAGT
GGGGAGGAAAACGCGCAGTTCTGGATTCCGATTGAAGAGAAAGTGCTGGC
GGAGATGGGGCGTGGCTTAAGAGGTGTGCCTGTGGTGGATGTCACGTCGA
TGCAGTCCTCATCCCTGTCCTTGTCTTCGTCTGAGACAGACCAAGAAGGA
AAAGGGGAAAAGTCAAGCGCCAGTCGGTGGATGCGGAGCTGGTGGCCCTG
GCGGAAGTTATTGGGTCGTTAACAATAGCGGCGAAAGTGTAAAAAATCGA
GGACGATAGACTGCAGAGTATGATTTACAAAGTCGAAGATAAAATCAAGG
GCCGCCACCAGCAATTA
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protein sequence of NO03G03990.1

>NO03G03990.1-protein ID=NO03G03990.1-protein|Name=NO03G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=899bp
MKLFGGKTGEVGLKQRMASSITLRQLAKFGAVVVGGGVTSWWLKDEEDER
SNGNADADSKMHIWPRYHLVDHLHVTLTTPPITQSLLPNWLLPSLSSVLP
PPLPSMEGEAEQAQRSQRQHLQPPPLLFLSCADPFVIDNLVQDVFEKRPL
DGPRVVVDFSSQDDGQSVQATYRIQSGSQPLRHLSFFGETEDKDFEAAPL
TGTVVLNLTPLLSLPVATPATNDMLRRVVDWITERQLPRPYNDKGQGGKH
QSLQVVLTATNPLGLWRLQKFSRLLQQQHHHLQRLRLPHQHQEEEGKSEQ
RLEQQGSLEEDDKTKEKEAAIPIFHLEILGPTHGYLFKQASLLLGSSSSP
APPTATSTTAVAMTVESEQGIAGTATTTVSPSFKDEEDHPPEHDQPPDQE
AGFMVVDKAANALDLRHFLSLQPTLGVLSHFSEARDPDTAAATLHNLVAN
ETERLRSAFSSTISSSGSSRKGTTTAAIILWDVLNAIHGDRIDMLSQGQI
EGGTTQPRVVPLESVLQLCDNNFRILEALIAEGWVEFSYPELKGSSVTIE
GSQSPFSGNVEEPEGREGSGRGQEETQIEGDERQTVNAENIVAPSQPDLP
EGYEHESAIFPEAESGTATEIPIADESWLICRGSLETLQGGGMKNSDSSN
SSNKGSKESKDEEEGGLDSVPLPKWISTPAAVTMAWKTLEIDPALARYMH
ARADARHFVQEANVLGHHREALGMEWAELHKARMVLRERAPELSDEDFIS
LQLELIRLEKSAASRALEMLLRCKRLKELHEKMCGVLTAEEVPCIKLLSG
QLVSSGSCGGDFQENETDGGVTCGSGEENAQFWIPIEEKVLAEMGRGLRG
VPVVDVTSMQSSSLSLSSSETDQEGKGEKSSASRWMRSWWPWRKLLGR*
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Synonyms
Publications