NO03G03900, NO03G03900 (gene) Nannochloropsis oceanica

Overview
NameNO03G03900
Unique NameNO03G03900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length264
Alignment locationchr3:1145628..1145891 +

Link to JBrowse

Properties
Property NameValue
DescriptionAlpha-glucosidase ii
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1145628..1145891 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
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BLAST of NO03G03900 vs. NCBI_GenBank
Match: EWM29793.1 (alpha-glucosidase ii [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 9.900e-13
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 0 
Query:    4 GSLSCVRVGGGMEAGMIKNEVERVVVVGWKSKPKSVTVSV--EGGKEGGEAQAALLLEFEYNGKKKVLTIRKPAVMVDENWTMVIR 88
            G L  VR GG  E    +N+VER+VV+GWK+KPK+VT+SV  +GG E  +A     LEF Y+ KK+VLTIRKP VM+DE+WT+ +R
Sbjct:  923 GMLRNVRQGGA-EDRPFRNQVERIVVLGWKAKPKAVTLSVSEQGGAE-KQATTQRSLEFMYDAKKRVLTIRKPEVMLDEDWTIGLR 1006
The following BLAST results are available for this feature:
BLAST of NO03G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29793.19.900e-1354.65alpha-glucosidase ii [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03900.1NO03G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03900.1NO03G03900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03900 ID=NO03G03900|Name=NO03G03900|organism=Nannochloropsis oceanica|type=gene|length=264bp
ATGCAAAAGGGCTCTTTGAGTTGCGTGAGGGTGGGGGGTGGAATGGAGGC
AGGGATGATCAAGAATGAGGTAGAGAGGGTGGTAGTGGTGGGCTGGAAGA
GTAAGCCGAAGAGTGTGACGGTTTCGGTGGAGGGAGGAAAGGAGGGAGGC
GAGGCGCAAGCGGCGCTGTTGTTGGAGTTTGAGTATAATGGGAAGAAGAA
GGTGTTGACTATTCGGAAGCCAGCGGTGATGGTGGATGAGAATTGGACGA
TGGTAATCCGATAG
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protein sequence of NO03G03900.1

>NO03G03900.1-protein ID=NO03G03900.1-protein|Name=NO03G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MQKGSLSCVRVGGGMEAGMIKNEVERVVVVGWKSKPKSVTVSVEGGKEGG
EAQAALLLEFEYNGKKKVLTIRKPAVMVDENWTMVIR*
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Synonyms
Publications