NO03G03840, NO03G03840 (gene) Nannochloropsis oceanica

Overview
NameNO03G03840
Unique NameNO03G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1522
Alignment locationchr3:1130735..1132256 +

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Properties
Property NameValue
DescriptionDNA methylase, N-6 adenine-specific, eukaryotic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1130735..1132256 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Homology
BLAST of NO03G03840 vs. NCBI_GenBank
Match: EWM29797.1 (DNA methylase, N-6 adenine-specific, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 253.4 bits (646), Expect = 7.000e-64
Identity = 122/209 (58.37%), Postives = 157/209 (75.12%), Query Frame = 0
Query:   39 GPIPMCENEGQDTEASERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSISPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEALPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKT-RKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPELM 247
            G IP+ E E  D      K+F+ ++PEN  +NQYWYS  TIA   +EVEEQAS T G IAFLSTPS+YFSISP  R+R+RL DFD++W+ DPG+++Y++ H  ALP EL+ + +MVV+DPPFITEEVW MY++A ++LL  +   E E+T  +  ILCTTVSENA  L  LLGVK+R F+PSIP+L YQFS+FSNYES RLD +NPEL+
Sbjct:    5 GHIPVVEIEPGDGNDEASKDFLFRNPENTMMNQYWYSPATIAVFVAEVEEQASHTSGNIAFLSTPSIYFSISPAVRKRSRLLDFDLKWSKDPGYIMYDFNHPGALPEELRSQSSMVVLDPPFITEEVWGMYSRAVRWLLKTTKDGEEERTGLEGRILCTTVSENADRLNRLLGVKKRHFQPSIPSLTYQFSTFSNYESPRLDQVNPELL 213          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: CBN76459.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 186.0 bits (471), Expect = 1.400e-43
Identity = 93/191 (48.69%), Postives = 125/191 (65.45%), Query Frame = 0
Query:   55 ERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSISPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEALPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            +R  F++K+PEN  LNQYWYS  TI ++ +EV E  S   G  AFLSTPS+YFS+    R + ++FD D +WA DPGFVLY+Y   + +P  L+  F MVV+DPPF+T +VW+ Y  A K LLL+  G        R +LC+T+ ENA  ++ LLG     FKPSIP LVYQ+S + NY+S RL + NPE+
Sbjct:    7 KRNRFLMKNPENGDLNQYWYSKATIDAIVAEVGEFGS---GGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATK-LLLRPGG-------ARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEI 186          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: XP_002905417.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68258.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 174.1 bits (440), Expect = 5.400e-40
Identity = 93/204 (45.59%), Postives = 130/204 (63.73%), Query Frame = 0
Query:   48 GQDTEASERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSI-----SPTTRQRARLFDFDVQWAWD-PGFVLYNYKHLEALPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            G+ T+    + F  K PE   LNQYWYSA T+A+LA E   +   +GG IAFLSTPS+YF++        +++   LFDFD ++A +   FV +++   + +P EL   F  V++DPPFIT EVW++YAK AK LL         +++   IL TT+ ENA ++Q LLG + R FKPSIP LVYQ++ F+NYES  LDA+NPE+
Sbjct:    3 GEATQKRHARSFWQKFPEKEELNQYWYSADTVATLAKEAIVETPESGGRIAFLSTPSVYFAVQTQQNDDLSQRECFLFDFDPKFASEGEHFVPFDFNKPDDIPSELVGTFDFVLVDPPFITREVWELYAKTAKLLL---------RSKDSKILLTTI-ENAAMIQELLGCRSRTFKPSIPHLVYQYALFTNYESPALDALNPEV 196          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: XP_009538711.1 (hypothetical protein PHYSODRAFT_307569 [Phytophthora sojae] >EGZ05850.1 hypothetical protein PHYSODRAFT_307569 [Phytophthora sojae])

HSP 1 Score: 172.2 bits (435), Expect = 2.000e-39
Identity = 91/220 (41.36%), Postives = 133/220 (60.45%), Query Frame = 0
Query:   32 FHKMEGPGPIPMCENEGQDTEASERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSISP-----TTRQRARLFDFDVQWAWD-PGFVLYNYKHLEALPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            FH  +  G +       + T+    + F  K PE   LNQYWYS  T+A+LA E   +A  +GG +AFLSTPS+YF++       +T+    LFDFD ++A +   FV +++   + +P EL   F  V++DPPFIT EVW++YA+  K LL         ++++  IL TT+ ENA ++  LLG + R FKPSIP LVYQ++ ++NYES  LDA+NPE+
Sbjct: 1104 FHARKQNGAMKDRSAPREATQIRRTRTFWQKFPEKEELNQYWYSVGTVATLAREAIVEAPESGGRVAFLSTPSVYFAVKSQQSDFSTQHECFLFDFDPKFASEGDHFVPFDFHKPQDVPSELAGTFDFVIVDPPFITREVWELYAETIKLLL---------RSKESKILLTTIEENAAMIHELLGCRARAFKPSIPHLVYQYALYTNYESPALDAVNPEV 1314          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: XP_013758105.1 (hypothetical protein AMSG_05034 [Thecamonas trahens ATCC 50062] >KNC49074.1 hypothetical protein AMSG_05034 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 172.2 bits (435), Expect = 2.000e-39
Identity = 93/191 (48.69%), Postives = 120/191 (62.83%), Query Frame = 0
Query:   55 ERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSISPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEALPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            ++  F+ K PEN   NQYWYSA TI +L  E    A A G  IA LSTPS++FS+    + RA LFD+D QW     FV Y+Y+  +  P +L + +  VV+DPPFIT EVW++YA     +++     EG K     I+CTTVSENA LL  L+GVK  RFKP IP LVYQ+S F+NY S  LD+ NPE+
Sbjct:   11 KKNRFLRKTPENGDFNQYWYSALTIETLVGE----AVAHGTRIACLSTPSVFFSLPKEVQARATLFDYDRQWDELDQFVFYDYREPDDFPAKLTNTYDFVVVDPPFITAEVWELYADVINRMVV-----EGGK-----IICTTVSENADLLDGLVGVKPVRFKPLIPQLVYQYSIFANYTSPALDSPNPEV 187          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: EJY84427.1 (N6-adenineMlase domain containing protein (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 171.4 bits (433), Expect = 3.500e-39
Identity = 89/188 (47.34%), Postives = 125/188 (66.49%), Query Frame = 0
Query:   59 FILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSI-SPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEALPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            F+ K+ EN  LNQYWYS  TI  LASE E+     G +IAFLSTPS+YFS+ +   +  ++ FD+D ++  DP F+ Y++   E +P EL+ +F MVVIDPPFIT EVW+ Y +A+K+LL     ++G+      IL +T+ EN   +  LLG K R+F+PSIP LVYQ+S +SNY+S  L+  NPE+
Sbjct:    7 FLAKNKENADLNQYWYSKPTINFLASECEQ----FGKKIAFLSTPSVYFSLKNKEIKANSKCFDYDEKFGKDPNFIFYDFNKPEDIPRELEKQFDMVVIDPPFITREVWEKYTEASKFLL----ADDGK------ILLSTIDENEAFILELLGAKRRQFRPSIPNLVYQYSLYSNYDSEGLNNKNPEI 180          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: GAX73222.1 (hypothetical protein CEUSTIGMA_g675.t1 [Chlamydomonas eustigma])

HSP 1 Score: 171.0 bits (432), Expect = 4.600e-39
Identity = 93/194 (47.94%), Postives = 121/194 (62.37%), Query Frame = 0
Query:   54 SERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSI--SPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEALPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            + +  F++K  EN  LNQYWYSA TI +L  E+   AS     +AFLSTPS+YFS+      ++ + +FDFD QW  DP F  Y++   E LP  L + F MVVIDPPFIT EVW+ Y KAAK LLLK+ G          ++ +TV+EN GLL  LLG K   FKPSIP L+YQ++ F+NY+   L   NPE+
Sbjct:    4 TSKNRFLIKTSENELLNQYWYSAATIEALVQEILSSAS----RVAFLSTPSVYFSLPKDSEVKKSSWVFDFDEQWRTDPHFCKYDFNKPEDLPGNLLNDFDMVVIDPPFITREVWEKYTKAAK-LLLKNEG---------KVIASTVAENDGLLSELLGSKPCNFKPSIPHLIYQYNFFTNYKPTALAEKNPEI 183          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: XP_003058074.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH58025.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 169.9 bits (429), Expect = 1.000e-38
Identity = 93/202 (46.04%), Postives = 124/202 (61.39%), Query Frame = 0
Query:   50 DTEASERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSISPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEALPV------ELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            D E  ++  F+    E   LNQYWYS RTIA++AS+VE+Q S+   +  FLSTPS+YFS++  TR R+  FD D QWA +PGFV Y++      P+      +LK  F MV+IDPPFIT EVW+ Y   AK  LLK  G          +L +T+ ENA  ++ LLGV  + F PSIPTLVYQ+  +++YES  L   NPE+
Sbjct:   14 DGEKLKKNRFLSTTKEVEDLNQYWYSNRTIAAMASDVEDQCSSPDSKACFLSTPSVYFSLNKDTRARSWCFDLDTQWAREPGFVKYDFND----PIGFDGFDDLKGTFDMVIIDPPFITREVWEKYTTTAK-ALLKPGG---------KVLASTIQENAPFVKELLGVTPQVFMPSIPTLVYQYHLYASYESKFLAEKNPEI 201          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: XP_024578271.1 (n6-adeninemlase domain containing protein [Plasmopara halstedii] >CEG41902.1 n6-adeninemlase domain containing protein [Plasmopara halstedii])

HSP 1 Score: 164.1 bits (414), Expect = 5.600e-37
Identity = 86/198 (43.43%), Postives = 123/198 (62.12%), Query Frame = 0
Query:   54 SERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSI-----SPTTRQRARLFDFDVQWAWDPG-FVLYNYKHLEALPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            ++ + F  + PE   LNQYWYSA T+A+LA E  E+     G IAFLSTPS+YF+         T +   LFDFD ++A +   FV +++K  E +P +L   F  V++DPPF+T EVW++YAK  K LL         +++   +L TT+ ENA ++  LLG + R FKPSIP LVYQ++ ++NYES  LD +NPE+
Sbjct:    9 ADPRTFWQRFPEKEELNQYWYSADTVAALAKEAIEETPEQSGRIAFLSTPSVYFACRNQQRDDLTTRECFLFDFDSKFAPEGRFFVPFDFKKPENVPEKLAGTFDFVIVDPPFVTHEVWELYAKTIKLLL---------RSKNSKVLLTTIEENATVIYNLLGCRLRTFKPSIPHLVYQYAIYTNYESPSLDIVNPEI 197          
BLAST of NO03G03840 vs. NCBI_GenBank
Match: XP_002507892.1 (predicted protein [Micromonas commoda] >ACO69150.1 predicted protein [Micromonas commoda])

HSP 1 Score: 162.2 bits (409), Expect = 2.100e-36
Identity = 87/202 (43.07%), Postives = 123/202 (60.89%), Query Frame = 0
Query:   50 DTEASERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFLSTPSLYFSISPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEALPV------ELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPEL 246
            D +  ++  F+    E   LNQYWYS RTI+++A +VE+  +A     AFLSTPS+YFS+S   R R+  FD D QW  +PG+V Y++      P+      ELK  F MV+IDPPFIT EVW+ Y + A++ LLK  G         +++ +T+ ENA  ++ LLGV  + F PSIPTLVYQ+  +++YES  L   NPE+
Sbjct:   14 DGDKLKKNRFLSTTKEVEDLNQYWYSNRTISAMARDVEDVCAAPETRAAFLSTPSVYFSLSKEVRARSWCFDLDTQWQKEPGYVCYDFNK----PIDFEGAEELKGTFDMVIIDPPFITREVWEKYTETARW-LLKPGG---------HVMASTIQENAPFMKELLGVDPQVFMPSIPTLVYQYYLYASYESKHLKDKNPEI 201          
The following BLAST results are available for this feature:
BLAST of NO03G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29797.17.000e-6458.37DNA methylase, N-6 adenine-specific, eukaryotic [N... [more]
CBN76459.11.400e-4348.69conserved unknown protein [Ectocarpus siliculosus][more]
XP_002905417.15.400e-4045.59conserved hypothetical protein [Phytophthora infes... [more]
XP_009538711.12.000e-3941.36hypothetical protein PHYSODRAFT_307569 [Phytophtho... [more]
XP_013758105.12.000e-3948.69hypothetical protein AMSG_05034 [Thecamonas trahen... [more]
EJY84427.13.500e-3947.34N6-adenineMlase domain containing protein (macronu... [more]
GAX73222.14.600e-3947.94hypothetical protein CEUSTIGMA_g675.t1 [Chlamydomo... [more]
XP_003058074.11.000e-3846.04predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_024578271.15.600e-3743.43n6-adeninemlase domain containing protein [Plasmop... [more]
XP_002507892.12.100e-3643.07predicted protein [Micromonas commoda] >ACO69150.1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03840.1NO03G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521930gene_1582Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g43gene816Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03840.1NO03G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03840 ID=NO03G03840|Name=NO03G03840|organism=Nannochloropsis oceanica|type=gene|length=1522bp
GGTTTCTGGCCGTTGAAAATGGGCCATGCGTCAACTAATGCCCCTCCTTG
TGGAGGCATATGCAAGTCCCATGCGTACAAGTAGAATACGGTAGTACTTT
TGATGAGGTGTTTAAAGCCTGGCGCTTGCTTGAAGGAGATACCACCACTT
CTTGGTGTCTGACGGGGGCAGGAAGGACAGCAAATCCCGTTTTACACCCC
ACCAAATGCCCGAATGTTGTAAATAGAACGCATTTTTAATAGTTTCATTT
GACCAGGTACGCCGCTTAGTTAAGCTAGCTTCTTAATATATTGTATCATA
TTAGAGTACCTCGAACTAGATGTTGGTAGCGCAGACGTCGAACTTTTTCC
CAGCCATATATACAATGGAACAATACGTCATCGACTACTCCCCTTCGCAA
CCACTCCCTTATTTCCACAAGATGGAGGGCCCGGGGCCTATCCCTATGTG
CGAAAACGAGGGCCAGGACACGGAAGCCAGCGAAAGAAAAGAATTTATTC
TAAAACATCCGGAGgtaaggatacagatttgcttcgcctgcgagcagccc
caaactcgtctggcttgccctccgagcacgcatccaaaccctgttatcct
ctgcttgtgtttgcgttaacccctctcacttccccattgtttctctcacc
taaatctcgaaacagAACGTTCATCTTAACCAATACTGGTATTCTGCTCG
TACTATTGCCAGCTTGGCCTCCGAGGTTGAAGAGCAAGCCTCAGCCACTG
GTGGGGAAATCGCATTTCTCAGCACGCCCAGCCTCTACTTTAGTATTTCC
CCCACCACGCGTCAGCGCGCTCGACTGTTTGATTTCGACGTGCAGTGGGC
ATGGGACCCTGGCTTTGTGTTATACAACTACAAGCATCTGGAAGCGCTCC
CTGTGGAGCTCAAGCATCGGTTTACGATGGTGGTCATCGATCCTCCGTTT
ATCACGGAAGAGGTTTGGAAGATGTACGCCAAGGCTGCAAAATATTTGCT
ACTAAAGAGTAGCGGCAATGAGGGCGAGAAGACCAGAAAAAGGAATATTC
TGTGCACCACAGTCAGTGAGAATGCAGGGCTACTACAGGCCTTACTGGGA
GTGAAGGAGAGGCGTTTTAAACCGTCCATCCCCACATTAGTCTACCAATT
CTCTTCGTTTAGCAACTACGAATCGGCAAGATTGGATGCGATCAATCCTG
AACTGATGTGATGTACAAAACAATTATTGGAAATGAGTAGTGAGAGAGGA
GCGGGAAGATGGAGGGCCATAGGATTTGAGGAGACTAGAATAAACATTTA
ATAGTAATGGTGGATAAATTCAAGATAAAAGGACACATGAAAAAAACACA
TGCTTCCGTAGAAATTATCAAGATGATAGGACATATCACGATAAGAAGGC
GACTGATTTGACAGTCACTGATTCAAACAGAAAGAAAATAAAAAGCAAAT
CAAAAACAGACCTCCCAGGAAGATAGCCAACCCGCATCAAACCTAAAAGT
AAAACCAAACCAAAAACCAAAC
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protein sequence of NO03G03840.1

>NO03G03840.1-protein ID=NO03G03840.1-protein|Name=NO03G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MLVAQTSNFFPAIYTMEQYVIDYSPSQPLPYFHKMEGPGPIPMCENEGQD
TEASERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASATGGEIAFL
STPSLYFSISPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEALPVELKHR
FTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRNILCTTVSE
NAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAINPELM*
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Synonyms
Publications