NO03G03750, NO03G03750 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G03750 vs. NCBI_GenBank
Match: EWM29802.1 (u1 small nuclear ribonucleoprotein a [Nannochloropsis gaditana]) HSP 1 Score: 335.1 bits (858), Expect = 2.100e-88 Identity = 173/262 (66.03%), Postives = 203/262 (77.48%), Query Frame = 0 Query: 31 MDDDTPTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGEVPERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQP--GHVNGA----AAEGHMSTAALPPAL-----PHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRARACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 M D P+ATVYVNN+NEK+RGEKLMQGL+Q+F P+GK++KIHAR+SLKLRGQAF+++DRV DAQ+A+ KLQ FSFYGK LR+A PSD TL+A+G P+RRPAHPKKGMVAVKLE+ SG R+VP ATPVAQPFAP A P + P H NG A+ G S +PPA+ P+NVLFCEELP+EATEEML LF+QYAGF GVRMV AR CAF+DF SEPEAT ALHGL+GFKLTEE PLK+SYARQ Sbjct: 1 MAADVPSATVYVNNVNEKIRGEKLMQGLRQLFNPMGKIRKIHARRSLKLRGQAFVVFDRVNDAQNAIDKLQNFSFYGKPLRMAITQEPSDQTLRAQGVEPDRRPAHPKKGMVAVKLERTKGSGSRSVPTATPVAQPFAPSATLDVPPXXXQLPPARAHTNGGADPMASTGEGSGFVIPPAVAAPAPPYNVLFCEELPAEATEEMLVALFSQYAGFMGVRMVAARGCAFLDFKSEPEATVALHGLSGFKLTEERPLKLSYARQ 262
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_009383740.1 (PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform X2 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 162.9 bits (411), Expect = 1.400e-36 Identity = 93/249 (37.35%), Postives = 143/249 (57.43%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGEV--PERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ ++L + L VF+ GK+ ++ A K+LK +GQA+++++ V A A+ ++QGF FY K +R+ +A SD+ KA G ERR H ++ + + G + A A+G+ PP M A G S PALP+N+LF + LP E T ML LF QY GFK VRMV A+ AFV++G E ++T A+ GL GFK+T++NP+ ++YA++ Sbjct: 16 PNMTIYINNLNEKIKLDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSATEALKRMQGFPFYDKPMRIQYAKTKSDIISKADGTFTPQERRKRHDERDRKKREQHHDANQAGTGINSAY--------SGAYGAVPPLAQM-------AYGGGAKSMLPETPALPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGFKITQQNPMLITYAKK 249
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_009381854.1 (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X2 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 162.5 bits (410), Expect = 1.900e-36 Identity = 95/249 (38.15%), Postives = 143/249 (57.43%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ ++L + L VF+ GK+ ++ A K+LK +GQA+++++ V A A+ ++QGF FY K +R+ +A SD+ KA G VP ERR H + GG + A A+G+ PP + G G S PALP+N+LF + LP E T ML LF QY GFK VRMV A+ AFV++G E ++T A+ GL GFK+T++NP+ ++YA++ Sbjct: 16 PNMTIYINNLNEKIKLDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVQSATEALKRMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHDXXXXXXXXXXXDANQGGTGLNSAY--------SGAYGAVPPLSQLPYG-------GGAKSMLPEAPALPNNILFIQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGFKITQQNPMLITYAKK 249
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_010259516.1 (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X1 [Nelumbo nucifera]) HSP 1 Score: 161.4 bits (407), Expect = 4.100e-36 Identity = 95/249 (38.15%), Postives = 148/249 (59.44%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ E+L + L VF+ GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP ERR H ++ K + + G + A A+G+ PP P ++ GA + PA P+N+LF + LP E T ML LF QY GFK VRMV A+ AFV++G E ++T A+ GL GFK+T++NP+ ++YA++ Sbjct: 8 PNMTIYINNLNEKIKLEELKKSLLAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSATNALRQMQGFPFYDKPMRIQYARTKSDIIAKADGTFVPRERRKRHDERAERKRKEQHDANQAGLGLNSAY--------TGAYGAAPPQLSQLP-YLGGA-----KTMVPEAPAPPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGFKITQQNPMLITYAKK 242
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_008810218.1 (PREDICTED: U1 small nuclear ribonucleoprotein A-like [Phoenix dactylifera]) HSP 1 Score: 160.2 bits (404), Expect = 9.200e-36 Identity = 94/250 (37.60%), Postives = 148/250 (59.20%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPM-QPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ ++L + L VF+ GK+ ++ A K+LK +GQA++I++ V A+ A+ ++QGF FY K +R+ +A SD+ KA G VP ERR H ++ +++ ++ + P +G+ PP + PG G S PALP+++LF + LP E T ML LF QY GFK VRMV A+ AFV++G E +AT A+ GL GFK+T++NP+ ++YA++ Sbjct: 13 PNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVSSAKEALKRMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEERAXXXXXXQQLDATQTGSGP--------------YGATPPLSQLPYPG--------GAKSMIPEAPALPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEMQATLAMQGLQGFKITQQNPMLITYAKK 240
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_009381848.1 (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X1 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 160.2 bits (404), Expect = 9.200e-36 Identity = 95/250 (38.00%), Postives = 145/250 (58.00%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKG-MVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ ++L + L VF+ GK+ ++ A K+LK +GQA+++++ V A A+ ++QGF FY K +R+ +A SD+ KA G VP ERR H ++ + GG + A A+G+ PP + G G S PALP+N+LF + LP E T ML LF QY GFK VRMV A+ AFV++G E ++T A+ GL GFK+T++NP+ ++YA++ Sbjct: 16 PNMTIYINNLNEKIKLDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVQSATEALKRMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHDERAXXXXXXXXHDANQGGTGLNSAY--------SGAYGAVPPLSQLPYG-------GGAKSMLPEAPALPNNILFIQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGFKITQQNPMLITYAKK 250
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_010259517.1 (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X2 [Nelumbo nucifera]) HSP 1 Score: 159.8 bits (403), Expect = 1.200e-35 Identity = 95/249 (38.15%), Postives = 148/249 (59.44%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ E+L + L VF+ GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP ERR H ++ K + + G + A A+G+ PP Q ++ GA + PA P+N+LF + LP E T ML LF QY GFK VRMV A+ AFV++G E ++T A+ GL GFK+T++NP+ ++YA++ Sbjct: 8 PNMTIYINNLNEKIKLEELKKSLLAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSATNALRQMQGFPFYDKPMRIQYARTKSDIIAKADGTFVPRERRKRHDERAERKRKEQHDANQAGLGLNSAY--------TGAYGA--APPLSQLPYLGGA-----KTMVPEAPAPPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGFKITQQNPMLITYAKK 241
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_018815216.1 (PREDICTED: U1 small nuclear ribonucleoprotein A-like [Juglans regia]) HSP 1 Score: 159.5 bits (402), Expect = 1.600e-35 Identity = 95/249 (38.15%), Postives = 143/249 (57.43%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ E+L + L VF+ GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP ERR H +KG + G P A A+G+ PP P PG E PA P+++LF + LP E T ML LF QY GFK VRMV + AFV++G E ++T A+ L GFK+T++NP+ ++YA++ Sbjct: 12 PNVTIYINNLNEKIKLEELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRKRHEEKGRKKKEQHDANQPGIGLNP---------AYAGAYGATPPIP--YPGGAKAMVPEA--------PAPPNSILFVQNLPHETTPMMLQMLFYQYPGFKEVRMVETKPGIAFVEYGDEIQSTAAMQALQGFKITQQNPMLITYAKK 241
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_004247411.1 (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X2 [Solanum lycopersicum]) HSP 1 Score: 159.1 bits (401), Expect = 2.000e-35 Identity = 95/251 (37.85%), Postives = 149/251 (59.36%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALP--PALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ E+L + + VF+ GK+ ++ A K+LK +GQA++++D V A +A+ ++QGF FY K +R+ +A SD+ KA G VP E+R H KG + +G P A A+G+ PP Q ++ GA AA+P PA P+++LF + LP ++T ML LF QY GFK VRMV A+ AF+++G E ++T A+ L GFK+T +NP+ ++YA++ Sbjct: 21 PNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQDANQAGMGRNP---------AYAGAYGA--APPFSQIPYMGGA-------KAAVPEAPAPPNSILFVQNLPHQSTPMMLQMLFCQYPGFKEVRMVEAKPGIAFIEYGDEMQSTVAMQALQGFKITADNPMLITYAKK 253
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_009383739.1 (PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform X1 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 158.7 bits (400), Expect = 2.700e-35 Identity = 94/249 (37.75%), Postives = 144/249 (57.83%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGEV--PERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ ++L + L VF+ GK+ ++ A K+LK +GQA+++++ V A A+ ++QGF FY K +R+ +A SD+ KA G ERR H ++ K A T + ++ A+G+ PP M A G S PALP+N+LF + LP E T ML LF QY GFK VRMV A+ AFV++G E ++T A+ GL GFK+T++NP+ ++YA++ Sbjct: 16 PNMTIYINNLNEKIKLDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSATEALKRMQGFPFYDKPMRIQYAKTKSDIISKADGTFTPQERRKRHDERAD-----RKKREQHHDANQAGTGINSAYS--GAYGAVPPLAQM-------AYGGGAKSMLPETPALPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGFKITQQNPMLITYAKK 250 The following BLAST results are available for this feature:
BLAST of NO03G03750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G03750 ID=NO03G03750|Name=NO03G03750|organism=Nannochloropsis oceanica|type=gene|length=1169bpback to top protein sequence of NO03G03750.1 >NO03G03750.1-protein ID=NO03G03750.1-protein|Name=NO03G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bpback to top Synonyms
Publications
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