NO03G03730, NO03G03730 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G03730
Unique Name	NO03G03730
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1831
Alignment location	chr3:1103262..1105092 -

Link to JBrowse

Properties


Property Name	Value
Description	Nascent polypeptide-associated complex subunit beta

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1103262..1105092 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

Homology

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: CBJ27278.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.6 bits (392), Expect = 2.000e-34
Identity = 92/163 (56.44%), Postives = 112/163 (68.71%), Query Frame = 0

Query:   90 AARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQY--GQGGGIDPVLXXXXXXXXXXXXXVPDLVENFEAVS 251
            AAR RMIA+RFGGA   RTGG   VRRK+K  HK ++T+DDKKL  TLK++GVTNIP IEE NMFKN+GEVIHF  PKVQAS+ A TYV+SG +ETK +Q+LLPGII +LG +N+  L K+ +  +  G+ G  D                VPDLVENFE  S
Sbjct:    2 AARERMIARRFGGANATRTGG---VRRKKKNVHK-TATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQL-KEIAGNFPGGEAGAGD------------DEDDVPDLVENFEEAS 147

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: OQR98085.1 (transcription factor BTF3-like protein [Achlya hypogyna])

HSP 1 Score: 155.2 bits (391), Expect = 2.600e-34
Identity = 93/167 (55.69%), Postives = 112/167 (67.07%), Query Frame = 0

Query:   84 MADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPVLXXXXXXXXXXXXXVPDLVENFEAVS 251
            MADEI  AR R+ AK FG   +VRTGGKG+VRRK KA HK  +  DDKKL A LKKLGVT +PG++E N+FK++G+VIHF  PKVQASI + T+ +SGPA TK++QELLPGII QLG DN+  L KQ +E Y     +                 VPDLVENFE  S
Sbjct:    1 MADEIALARERLAAK-FG---DVRTGGKGSVRRKHKAAHK-PAPGDDKKLNAALKKLGVTPMPGVDEVNLFKSDGQVIHFVQPKVQASIASNTFAVSGPASTKSLQELLPGIINQLGPDNLANL-KQIAETY---TAMQRNAQGHSALEDEDDDDVPDLVENFEEAS 158

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: XP_009833848.1 (hypothetical protein H257_09349 [Aphanomyces astaci] >ETV76936.1 hypothetical protein H257_09349 [Aphanomyces astaci])

HSP 1 Score: 153.7 bits (387), Expect = 7.700e-34
Identity = 95/167 (56.89%), Postives = 110/167 (65.87%), Query Frame = 0

Query:   84 MADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPVLXXXXXXXXXXXXXVPDLVENFEAVS 251
            MADEI  AR R+ AK FG   +VRTGGKG+VRRK KA HK     DDKKL A LKKLGVT IPG+EE N+FK +G+VIHF  PKVQASI + T+ +SG A TK++QELLPGII QLG DN+  L KQ +E Y     +                 VPDLVENFE VS
Sbjct:    1 MADEIALARERLAAK-FG---DVRTGGKGSVRRKHKAAHK-VQPGDDKKLNAALKKLGVTPIPGVEEVNLFKADGQVIHFVQPKVQASIASNTFAVSGAASTKSLQELLPGIINQLGPDNLANL-KQIAETY---TAMQRNAQGHAALDDEDDDDVPDLVENFEDVS 158

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: XP_012200385.1 (hypothetical protein SPRG_05709 [Saprolegnia parasitica CBS 223.65] >KDO28792.1 hypothetical protein SPRG_05709 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 152.5 bits (384), Expect = 1.700e-33
Identity = 93/168 (55.36%), Postives = 111/168 (66.07%), Query Frame = 0

Query:   83 NMADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPVLXXXXXXXXXXXXXVPDLVENFEAVS 251
            +MADEI  AR R+ AK FG   +VRTGGKG+VRRK KA HK  +  DDKKL A LKKLGVT +P + E N+FK +G+VIHF  PKVQASI + T+ +SGPA TK++QELLPGII QLG DN+  L KQ +E Y     +                 VPDLVENFE VS
Sbjct:   17 DMADEIALARERLAAK-FG---DVRTGGKGSVRRKHKAAHK-PAPGDDKKLNAALKKLGVTPMPDVNEVNLFKADGQVIHFVQPKVQASIASNTFAVSGPASTKSLQELLPGIINQLGPDNLANL-KQIAETY---TAMQRNAQGHSALDDEDDDDVPDLVENFEDVS 175

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: GAX23608.1 (nascent polypeptide-associated complex subunit beta [Fistulifera solaris])

HSP 1 Score: 152.5 bits (384), Expect = 1.700e-33
Identity = 100/164 (60.98%), Postives = 121/164 (73.78%), Query Frame = 0

Query:   88 IDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPVLXXXXXXXXXXXXXVPDLVE-NFEAVS 251
            +D ARA+MIAKRFGGA +  TGGKG++RRK+   +++S+   D KL  TLKKLG TNIPGIEE N FK++G+VIHF+NPKVQA+I A TY+ISG  ETK +Q+LLP I+ QLG DN  AL    ++  G         XXXXXXXXXXXXXVPDLVE NFE VS
Sbjct:    1 MDDARAKMIAKRFGGA-STSTGGKGSIRRKKVVTNRSSNAQTDAKLSTTLKKLGATNIPGIEEVNFFKDDGKVIHFKNPKVQAAIAANTYIISGQHETKPLQDLLPSIVSQLGMDNFAALQNMAAQVGGS------XXXXXXXXXXXXXXXVPDLVEGNFEEVS 157

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: OEU15333.1 (NAC-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 151.8 bits (382), Expect = 2.900e-33
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 0

Query:   85 ADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQAL 208
            AD + AARA+MIAKRFGGA    TGGKGTVRRK+K   K ++ + D KLG TLKKLG TNIPGIEE N+FK +G VIHF NPKVQA+I A TYVISGP++TK +Q+LLP I+ QLG DN+  L
Sbjct:    4 ADAMAAARAKMIAKRFGGA-TASTGGKGTVRRKKKVAQKGAAQS-DAKLGTTLKKLGATNIPGIEEVNLFKEDGNVIHFVNPKVQAAIAANTYVISGPSDTKPLQDLLPSIVSQLGMDNLSQL 124

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: XP_008614509.1 (nascent polypeptide-associated complex subunit beta [Saprolegnia diclina VS20] >EQC32107.1 nascent polypeptide-associated complex subunit beta [Saprolegnia diclina VS20])

HSP 1 Score: 151.0 bits (380), Expect = 5.000e-33
Identity = 92/167 (55.09%), Postives = 110/167 (65.87%), Query Frame = 0

Query:   84 MADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPVLXXXXXXXXXXXXXVPDLVENFEAVS 251
            MADEI  AR R+ AK FG   +VRTGGKG+VRRK KA HK  +  DDKKL A LKKLGVT +P + E N+FK +G+VIHF  PKVQAS+ + T+ +SGPA TK++QELLPGII QLG DN+  L KQ +E Y     +                 VPDLVENFE VS
Sbjct:    1 MADEIALARERLAAK-FG---DVRTGGKGSVRRKHKAAHK-PAPGDDKKLNAALKKLGVTPMPDVNEVNLFKADGQVIHFVQPKVQASLASNTFAVSGPASTKSLQELLPGIINQLGPDNLANL-KQIAETY---TAMQRNAQGHSALDDEDDDDVPDLVENFEDVS 158

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: GAX15125.1 (nascent polypeptide-associated complex subunit beta [Fistulifera solaris])

HSP 1 Score: 150.2 bits (378), Expect = 8.500e-33
Identity = 101/164 (61.59%), Postives = 121/164 (73.78%), Query Frame = 0

Query:   88 IDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPVLXXXXXXXXXXXXXVPDLVE-NFEAVS 251
            +D ARA+MIAKRFGGA +  TGGKG++RRK+   +++S+   D KL  TLKKLG TNIPGIEE N FK++G+VIHF+NPKVQA+I A TY+ISG  ETK +Q+LLP I+ QLG DN  A    +     Q GG     XXXXXXXXXXXXXVPDLVE NFE VS
Sbjct:    1 MDDARAKMIAKRFGGA-STSTGGKGSIRRKKVVTNRSSNAQTDAKLSTTLKKLGATNIPGIEEVNFFKDDGKVIHFKNPKVQAAIAANTYIISGQHETKPLQDLLPSIVSQLGMDNFAA----YQNMAAQVGG--XXXXXXXXXXXXXXXXVPDLVEGNFEEVS 157

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: XP_024582745.1 (RNA polymerase II general transcription factor BTF3 and related proteins [Plasmopara halstedii] >CEG46376.1 RNA polymerase II general transcription factor BTF3 and related proteins [Plasmopara halstedii])

HSP 1 Score: 148.7 bits (374), Expect = 2.500e-32
Identity = 85/133 (63.91%), Postives = 100/133 (75.19%), Query Frame = 0

Query:   83 NMADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQY 216
            NMAD I  AR R+ AK FG   +VRTGGKGTVRRKRKA HK +S  DDKKLG  LKKLG+T IPG+EE N FK +G+VIHF  PKVQASI + T+ +SG  +TK++QELLPGII QLG DN+  L KQ +E Y
Sbjct:   19 NMADAITLARERLAAK-FG---DVRTGGKGTVRRKRKAIHKTAS-VDDKKLGGVLKKLGLTPIPGVEEVNFFKADGQVIHFLAPKVQASISSNTFAVSGFNQTKSLQELLPGIINQLGPDNLANL-KQIAESY 145

[Close]

BLAST of NO03G03730 vs. NCBI_GenBank
Match: XP_005830532.1 (hypothetical protein GUITHDRAFT_163787 [Guillardia theta CCMP2712] >EKX43552.1 hypothetical protein GUITHDRAFT_163787 [Guillardia theta CCMP2712])

HSP 1 Score: 147.1 bits (370), Expect = 7.200e-32
Identity = 87/150 (58.00%), Postives = 106/150 (70.67%), Query Frame = 0

Query:  105 NVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPK-VQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQY---GQGGGIDPVLXXXXXXXXXXXXXVPDLVENFEAVS 251
            +VRTGGKG+VRRK+KA HK S+T DDK+L  TLK+LGV NIPGIEE N+F++NG VIHF+NPK VQASI A TYVISG AE K +Q+LLPGII QLG DN++ L K+ +EQ+   GQ  G                  VP+LVE+FE  S
Sbjct:   14 SVRTGGKGSVRRKKKAVHK-SATTDDKRLQNTLKRLGVNNIPGIEEVNLFRDNGSVIHFKNPKQVQASIGANTYVISGTAENKKLQDLLPGIINQLGPDNLENL-KKIAEQFTGPGQAAG--------GSGDAKDDDDVPELVEDFEQAS 153

The following BLAST results are available for this feature:

BLAST of NO03G03730 vs. NCBI_GenBank

BLAST of NO03G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
CBJ27278.1	2.000e-34	56.44	conserved unknown protein [Ectocarpus siliculosus]	[more]
OQR98085.1	2.600e-34	55.69	transcription factor BTF3-like protein [Achlya hyp...	[more]
XP_009833848.1	7.700e-34	56.89	hypothetical protein H257_09349 [Aphanomyces astac...	[more]
XP_012200385.1	1.700e-33	55.36	hypothetical protein SPRG_05709 [Saprolegnia paras...	[more]
GAX23608.1	1.700e-33	60.98	nascent polypeptide-associated complex subunit bet...	[more]
OEU15333.1	2.900e-33	65.85	NAC-domain-containing protein [Fragilariopsis cyli...	[more]
XP_008614509.1	5.000e-33	55.09	nascent polypeptide-associated complex subunit bet...	[more]
GAX15125.1	8.500e-33	61.59	nascent polypeptide-associated complex subunit bet...	[more]
XP_024582745.1	2.500e-32	63.91	RNA polymerase II general transcription factor BTF...	[more]
XP_005830532.1	7.200e-32	58.00	hypothetical protein GUITHDRAFT_163787 [Guillardia...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL068	nonsL068	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR052	ngnoR052	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005522	NSK005522	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G03730.1	NO03G03730.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572725	gene_1570	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100017g54	gene826	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G03730.1	NO03G03730.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO03G03730 ID=NO03G03730|Name=NO03G03730|organism=Nannochloropsis oceanica|type=gene|length=1831bp
AGCCCCCCGCGCGACCGCGAGTTCCCCAGAGCCATCGCCTTCAGTGCGCC
TCGCTTCGCTCCGCTCTCCTATGCCTTTCTTCTTCTTTGCCTTCATAAAG
CAATGTCTACGCACCCTCCCAAACGGAAGGAAACAGAGCTCATGCTTGAT
GAAGGGAGAACTATTGGTCGCAGGGTGGAGACGGGTGGCTGGGGGGAGTG
GAGGACCGCACACTTTTAGCCTCCTCACCCCCTTCTTCTTCCTCATCGAT
CATCTCGTGGCTTCACTTTTCTAACACACCTGTAGACCTGGAGGATGAAC
ACGTTCATAGAGGGCAATATAGCTCGCACTCGCTTGTTGTTGGGATATGC
TAAAAGCGCCCGATCTATTCCCGGGGTCGTCGTTGCAGGGCAACCTCACA
TGAACGCGAGTATCATCGTCCTCATCACGTGCCTTGCTTTCTTCCTTGAT
CCTCACACAACGCTTCCCGACTCAACACACGCACCAATACAGGGCAGTTG
CTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTAGCAACATGGCGG
ATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAGCGCTTTGGAGGC
GCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCGGCGGAAGCGCAA
GGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAAAGCTTGGTGCTA
CATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATTGAGGAGGCGAAT
ATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAATCCTAAGGgtga
gttggttgaggcacagaagtgaagaacagacggaagggaaggcatgcgca
tgcccatcagaaggagtttttgtgtatggtagtattggagaaagaactgt
agaaattgaaaacgcgcggtgacgcgttctttccccttcctcctctccca
cccagTGCAAGCGTCCATCCAAGCCAAAACGTACGTGATCAGCGGTCCGG
CTGAGACGAAGACGATCCAAGAATTATTGCCCGGCATCATTCAGCAGCTG
GGTGGGGATAACATCCAAGCGTTGAGCAAGCAATTCAGCGAGCAGTACGG
GCAGGGGGGTGGGATCGACCCGGTCCTGGTTGAGGAGGGGGAAGAGGAAG
AGGATGATGACGATGCCGTGCCTGATTTGGTGGAGAATTTCGAGgtaggc
tttggaggaaggctataatattacaatcattagtgttgcttcaaagaaaa
gagggttgatgaattcatgcttatcatttcttctttaccgaaccaacatg
aaatgcactcccagGCCGTGTCCACCTAGATCTATCAGCACCAGGAACTG
TTCCAACAATGGACAGCGACTAGGAGATGAAGATAAACAGCTGCTCCATT
CCCTTTTCCTTATCTGCGTCCAAATTAGTTCTTTGTCAGGGTTGGGGAGG
AGGAGAGGGTAAACATGCAGAGGATGGATAGGGGAGGTGACTCCCATGCA
TCGTTTGTTTGTTCTCTCTTCTGTTTGAACGGATCAAAGAGACTCTCTGT
AGAGAATTAAGAAAGTCTTTTTAATCCTGTCTCTCCTCTCAAACAATAAT
AAATCACATTTTAAAAGGAGAAGGCAGGTGGGAGAGATGGAGGGGAGGAG
GGGAGGGTGAAGGGAGGGAGGGCATTCGTCATCCATAGGTTGTCCAGAAA
GAGGATGATGTGAAACAGGTAAAAGAAAATTAGGTATGGAGAGATAAGCT
GGTAACGATGAGACCAGAAGCAACAGGAAACAAAAAGAAAGAAGACAACA
ACCGACAAGAAACAAAACGTTTTAAGAAAAT

protein sequence of NO03G03730.1

>NO03G03730.1-protein ID=NO03G03730.1-protein|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MNTFIEGNIARTRLLLGYAKSARSIPGVVVAGQPHMNASIIVLITCLAFF
LDPHTTLPDSTHAPIQGSCCSSSSSSRRGITSNMADEIDAARARMIAKRF
GGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEE
ANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLG
GDNIQALSKQFSEQYGQGGGIDPVLVEEGEEEEDDDDAVPDLVENFEAVS
T*

Synonyms

Publications